Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0048s0099 Marchantia polymorpha HOM05D000850 ORTHO05D000266 1.8e-199 699.1 377 100.0
SEGI_08574 Sequoiadendron giganteum HOM05D001755 ORTHO05D001665 8.1e-14 82.4 354 28.0
SEGI_08629 Sequoiadendron giganteum HOM05D001755 ORTHO05D001665 1.7e-11 74.7 365 26.6
SMO230G0062 Selaginella moellendorffii HOM05D001755 ORTHO05D001665 2.5e-07 60.8 47 59.6
Pp3c25_13740 Physcomitrium patens HOM05D000850 ORTHO05D000266 4.3e-07 60.1 50 58.0
BraA09t36603Z Brassica rapa HOM05D000850 ORTHO05D000266 1.6e-06 58.2 49 53.1
Pp3c16_21590 Physcomitrium patens HOM05D000850 ORTHO05D000266 1.6e-06 58.2 47 59.6
Aa31LG1G15580 Aethionema arabicum HOM05D000850 ORTHO05D000266 2.1e-06 57.8 49 53.1
Hma1.2p1_0909F.1_g235740 Hydrangea macrophylla HOM05D000850 ORTHO05D000266 2.1e-06 57.8 47 53.2
MD08G1098800 Malus domestica HOM05D000850 ORTHO05D000266 2.1e-06 57.8 44 56.8
MD15G1081100 Malus domestica HOM05D000850 ORTHO05D000266 2.1e-06 57.8 44 56.8
Atru.chr3.313 Acer truncatum HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
arahy.Tifrunner.gnm1.ann1.0XTB7Y Arachis hypogaea HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
arahy.Tifrunner.gnm1.ann1.88TQBK Arachis hypogaea HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
BcaB02g09962 Brassica carinata HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
BcaC06g34783 Brassica carinata HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
A07p16890 Brassica napus HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
C07p24700 Brassica napus HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
BolC2t12527H Brassica oleracea HOM05D000850 ORTHO05D000266 2.8e-06 57.4 49 51.0
BolC7t42990H Brassica oleracea HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
BraA07t29415Z Brassica rapa HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
CSS0025252 Camellia sinensis var. sinensis HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
CANSAT01G1192 Cannabis sativa HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
Cfa004028 Carpinus fangiana HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
CiPaw.01G017500 Carya illinoinensis HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
CiPaw.02G008000 Carya illinoinensis HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
AUR62027424 Chenopodium quinoa HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
AUR62031273 Chenopodium quinoa HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
Ca_22159_v3 Cicer arietinum L. HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
Haze_15391 Corylus avellana HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
FvH4_1g16130 Fragaria vesca HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
FvH4_2g34280 Fragaria vesca HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
FAN15G0590 Fragaria x ananassa HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
FAN19G1078 Fragaria x ananassa HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
FAN23G1011 Fragaria x ananassa HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
FAN24G0118 Fragaria x ananassa HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
FAN26G2223 Fragaria x ananassa HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
FAN27G1802 Fragaria x ananassa HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
FAN28G0872 Fragaria x ananassa HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
Glyma.01G186700 Glycine max HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
Glyma.05G094900 Glycine max HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
Glyma.11G055300 Glycine max HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
Glyma.17G173100 Glycine max HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
Lj4C60G1 Lonicera japonica HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
Lj4g0006021 Lotus japonicus HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
Lalb_Chr05g0226531 Lupinus albus HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
MD02G1173400 Malus domestica HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
MD15G1284900 Malus domestica HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
Medtr5g017210 Medicago truncatula HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
Phvul.002G018300 Phaseolus vulgaris HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
Phvul.003G243350 Phaseolus vulgaris HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
Pp3c10_19020 Physcomitrium patens HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
Pp3c3_28970 Physcomitrium patens HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
Potri.005G138900 Populus trichocarpa HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 54.5
Prupe.7G132300 Prunus persica HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
PGR102G1173 Punica granatum HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
RcHm_v2.0_Chr2g0105811 Rosa chinensis HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
RcHm_v2.0_Chr6g0308101 Rosa chinensis HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
TPR.G19082 Trifolium pratense HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
TPR.G30707 Trifolium pratense HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
VMungo0251G2168 Vigna mungo HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
VMungo1215G3221 Vigna mungo HOM05D000850 ORTHO05D000266 2.8e-06 57.4 44 56.8
AL8G44310 Arabidopsis lyrata HOM05D000850 ORTHO05D000266 3.6e-06 57.0 49 51.0
BcaB01g00625 Brassica carinata HOM05D000850 ORTHO05D000266 3.6e-06 57.0 49 51.0
BcaB04g20075 Brassica carinata HOM05D000850 ORTHO05D000266 3.6e-06 57.0 49 51.0
BcaC03g18391 Brassica carinata HOM05D000850 ORTHO05D000266 3.6e-06 57.0 49 51.0
BcaC04g23190 Brassica carinata HOM05D000850 ORTHO05D000266 3.6e-06 57.0 49 51.0
BcaC04g23191 Brassica carinata HOM05D000850 ORTHO05D000266 3.6e-06 57.0 49 51.0
A09p09560 Brassica napus HOM05D000850 ORTHO05D000266 3.6e-06 57.0 49 51.0
C02p64660 Brassica napus HOM05D000850 ORTHO05D000266 3.6e-06 57.0 49 51.0
C09p11310 Brassica napus HOM05D000850 ORTHO05D000266 3.6e-06 57.0 49 51.0
BolC9t54017H Brassica oleracea HOM05D000850 ORTHO05D000266 3.6e-06 57.0 49 51.0
BraA09t39917Z Brassica rapa HOM05D000850 ORTHO05D000266 3.6e-06 57.0 49 51.0
Carub.0008s2745 Capsella rubella HOM05D000850 ORTHO05D000266 3.6e-06 57.0 49 51.0
CARHR280590 Cardamine hirsuta HOM05D000850 ORTHO05D000266 3.6e-06 57.0 49 51.0
ClCG02G012720 Citrullus lanatus HOM05D000850 ORTHO05D000266 3.6e-06 57.0 44 54.5
MELO3C020892.2 Cucumis melo HOM05D000850 ORTHO05D000266 3.6e-06 57.0 44 54.5
CsaV3_2G016810 Cucumis sativus L. HOM05D000850 ORTHO05D000266 3.6e-06 57.0 44 54.5
DCAR_019446 Daucus carota HOM05D000850 ORTHO05D000266 3.6e-06 57.0 44 56.8
ECA232G3777 Erigeron canadensis HOM05D000850 ORTHO05D000266 3.6e-06 57.0 44 56.8
Thhalv10004846m.g Eutrema salsugineum HOM05D000850 ORTHO05D000266 3.6e-06 57.0 49 51.0
HanXRQChr09g0267521 Helianthus annuus HOM05D000850 ORTHO05D000266 3.6e-06 57.0 44 56.8
Prupe.1G434000 Prunus persica HOM05D000850 ORTHO05D000266 3.6e-06 57.0 44 54.5
Sp2g29620 Schrenkiella parvula HOM05D000850 ORTHO05D000266 3.6e-06 57.0 49 51.0
Duzib264G0419 Durio zibethinus HOM05D000850 ORTHO05D000266 4.7e-06 56.6 44 56.8
Lalb_Chr09g0323211 Lupinus albus HOM05D000850 ORTHO05D000266 4.7e-06 56.6 44 56.8
Pp3c14_16620 Physcomitrium patens HOM05D000850 ORTHO05D000266 4.7e-06 56.6 44 59.1
Pp3c17_15380 Physcomitrium patens HOM05D000850 ORTHO05D000266 4.7e-06 56.6 44 59.1
Actinidia22640 Actinidia chinensis HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Actinidia23288 Actinidia chinensis HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Aa31LG4G18560 Aethionema arabicum HOM05D000850 ORTHO05D000266 6.2e-06 56.2 49 51.0
ATR0684G078 Amborella trichopoda HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Aqoxy5G01219 Aquilegia oxysepala HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
AL5G30450 Arabidopsis lyrata HOM05D000850 ORTHO05D000266 6.2e-06 56.2 49 51.0
AT3G50330 Arabidopsis thaliana HOM05D000850 ORTHO05D000266 6.2e-06 56.2 49 51.0
EL10As7g23743 Beta vulgaris HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
BcaB05g23209 Brassica carinata HOM05D000850 ORTHO05D000266 6.2e-06 56.2 49 51.0
BcaC09g50020 Brassica carinata HOM05D000850 ORTHO05D000266 6.2e-06 56.2 49 51.0
A01p24200 Brassica napus HOM05D000850 ORTHO05D000266 6.2e-06 56.2 49 51.0
A09p43340 Brassica napus HOM05D000850 ORTHO05D000266 6.2e-06 56.2 49 51.0
C01p29920 Brassica napus HOM05D000850 ORTHO05D000266 6.2e-06 56.2 49 51.0
BolC1t02935H Brassica oleracea HOM05D000850 ORTHO05D000266 6.2e-06 56.2 49 51.0
BraA01t02332Z Brassica rapa HOM05D000850 ORTHO05D000266 6.2e-06 56.2 49 51.0
BraA09t39803Z Brassica rapa HOM05D000850 ORTHO05D000266 6.2e-06 56.2 49 51.0
Carub.0005s1664 Capsella rubella HOM05D000850 ORTHO05D000266 6.2e-06 56.2 49 51.0
CARHR159790 Cardamine hirsuta HOM05D000850 ORTHO05D000266 6.2e-06 56.2 49 51.0
Cpa.g.sc49.31 Carica papaya HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Cfa018083 Carpinus fangiana HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
CiPaw.15G055200 Carya illinoinensis HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
ClCG05G019980 Citrullus lanatus HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Ciclev10003815m.g Citrus clementina HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
COL.COLO4_26529 Corchorus olitorius HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Haze_18029 Corylus avellana HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
MELO3C016763.2 Cucumis melo HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
CsaV3_4G034440 Cucumis sativus L. HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Duzib093G1076 Durio zibethinus HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Duzib116G0636 Durio zibethinus HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Thhalv10011068m.g Eutrema salsugineum HOM05D000850 ORTHO05D000266 6.2e-06 56.2 49 51.0
Glyma.06G040800 Glycine max HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Gohir.A05G203400 Gossypium hirsutum HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Gohir.A06G019200 Gossypium hirsutum HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Gohir.D05G206500 Gossypium hirsutum HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Gohir.D06G017600 Gossypium hirsutum HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Gorai.009G212900 Gossypium raimondii HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Gorai.010G020500 Gossypium raimondii HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Hma1.2p1_0360F.1_g135600 Hydrangea macrophylla HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Manes.18G038400 Manihot esculenta HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Nn5g30276 Nelumbo nucifera HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
PSO170G6551 Papaver somniferum HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
PSO210G3717 Papaver somniferum HOM05D000850 ORTHO05D000266 6.2e-06 56.2 51 49.0
PSO675G4166 Papaver somniferum HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Peaxi162Scf01073g00009 Petunia axillaris HOM05D000850 ORTHO05D000266 6.2e-06 56.2 49 53.1
Phvul.009G065700 Phaseolus vulgaris HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Potri.002G125000 Populus trichocarpa HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Potri.014G027300 Populus trichocarpa HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
QL02p004506 Quercus lobata HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
QL06p048768 Quercus lobata HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Rhsim06G0051300 Rhododendron simsii HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Sabra14G0018700 Salix brachista HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Sp5g11860 Schrenkiella parvula HOM05D000850 ORTHO05D000266 6.2e-06 56.2 49 51.0
Sed0024863 Sechium edule HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Sc02g0007240 Simmondsia chinensis HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Thecc.08G005200 Theobroma cacao HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
TAR628G0200 Trochodendron aralioides HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
VMungo1309G1703 Vigna mungo HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
GSVIVG01009479001 Vitis vinifera HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Zm00001eb176650 Zea mays HOM05D000850 ORTHO05D000266 6.2e-06 56.2 44 54.5
Atru.chr13.710 Acer truncatum HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
AT5G67060 Arabidopsis thaliana HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
A09p44570 Brassica napus HOM05D000850 ORTHO05D000266 8.1e-06 55.8 49 49.0
Cpa.g.sc55.142 Carica papaya HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
AUR62043211 Chenopodium quinoa HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 56.8
Ca_24765_v3 Cicer arietinum L. HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
COL.COLO4_11430 Corchorus olitorius HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
Dinv35946 Davidia involucrata HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
Dinv39304 Davidia involucrata HOM05D002332 ORTHO05D002509 8.1e-06 55.8 44 54.5
Duzib147G1086 Durio zibethinus HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
Duzib187G0426 Durio zibethinus HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
Gohir.A02G157000 Gossypium hirsutum HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
Gohir.A11G192900 Gossypium hirsutum HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
Gohir.D03G023800 Gossypium hirsutum HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
Gohir.D11G199600 Gossypium hirsutum HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
Gorai.003G025300 Gossypium raimondii HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
Gorai.007G213700 Gossypium raimondii HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
HanXRQChr16g0508161 Helianthus annuus HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
Lj1g0015950 Lotus japonicus HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 52.3
Lalb_Chr11g0062601 Lupinus albus HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
MBI06_g02570_MAGBIO Magnolia biondii HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
Manes.12G103400 Manihot esculenta HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
Manes.13G123700 Manihot esculenta HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
Nn1g04832 Nelumbo nucifera HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 52.3
Os09g0455300 Oryza sativa ssp. japonica HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
Psat4g086640 Pisum sativum HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
Sabra07G0039500 Salix brachista HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
SalBow7G1691 Salvia bowleyana HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
THA.LOC104827166 Tarenaya hassleriana HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
Thecc.01G057400 Theobroma cacao HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
TWI53G1195 Tripterygium wilfordii HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
TWI56G1474 Tripterygium wilfordii HOM05D000850 ORTHO05D000266 8.1e-06 55.8 53 49.1
TWI73G1009 Tripterygium wilfordii HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5
Zm00001eb037960 Zea mays HOM05D000850 ORTHO05D000266 8.1e-06 55.8 44 54.5


User provided reference genes

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