Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 3.8e-129 464.9 245 100.0
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 3.5e-103 378.6 219 90.4
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 8.0e-55 218.0 253 50.6
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 5.4e-51 205.3 249 47.4
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 3.5e-42 176.0 254 42.1
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 5.2e-38 162.2 237 43.0
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 9.8e-37 157.9 229 40.2
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 2.2e-36 156.8 240 42.9
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 1.4e-35 154.1 244 42.2
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 1.2e-34 151.0 237 40.5
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 1.2e-34 151.0 237 39.7
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 3.5e-34 149.4 244 41.8
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 1.3e-33 147.5 239 39.7
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 3.9e-33 146.0 247 40.1
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 5.0e-33 145.6 239 39.7
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 6.6e-33 145.2 237 41.4
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 1.5e-32 144.1 241 38.2
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 1.5e-32 144.1 244 40.6
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 1.9e-32 143.7 247 40.5
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 1.9e-32 143.7 239 38.5
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 2.5e-32 143.3 237 39.2
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 2.5e-32 143.3 237 40.5
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 3.3e-32 142.9 236 40.7
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 3.3e-32 142.9 241 37.8
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 3.3e-32 142.9 233 37.8
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 3.3e-32 142.9 233 37.8
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 4.3e-32 142.5 244 41.4
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 4.3e-32 142.5 247 39.3
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 5.6e-32 142.1 235 37.9
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 1.2e-31 141.0 236 41.1
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.6e-31 140.6 236 38.1
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 1.6e-31 140.6 237 37.6
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 3.6e-31 139.4 236 39.0
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 6.2e-31 138.7 243 37.4
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 6.2e-31 138.7 235 38.7
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 1.8e-30 137.1 239 37.7
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 2.3e-30 136.7 237 38.4
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 4.0e-30 136.0 236 36.9
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 4.0e-30 136.0 233 37.3
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 6.8e-30 135.2 216 39.4
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 6.8e-30 135.2 240 36.2
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 6.8e-30 135.2 235 37.0
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 8.9e-30 134.8 244 37.3
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 8.9e-30 134.8 233 37.8
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 1.2e-29 134.4 235 36.6
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 1.2e-29 134.4 236 36.4
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 1.2e-29 134.4 234 38.9
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 1.2e-29 134.4 235 38.3
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 1.2e-29 134.4 235 37.4
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 1.2e-29 134.4 235 37.4
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.5e-29 134.0 235 37.4
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.5e-29 134.0 235 37.4
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.5e-29 134.0 235 37.4
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 1.5e-29 134.0 228 37.7
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 2.0e-29 133.7 230 39.1
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 2.6e-29 133.3 236 36.4
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 2.6e-29 133.3 247 37.2
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 2.6e-29 133.3 241 36.1
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.4e-29 132.9 235 37.0
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 3.4e-29 132.9 240 35.0
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 4.4e-29 132.5 234 36.8
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 5.8e-29 132.1 225 38.7
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 5.8e-29 132.1 247 36.8
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 5.8e-29 132.1 237 34.2
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 7.5e-29 131.7 224 38.8
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 7.5e-29 131.7 240 35.8
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 7.5e-29 131.7 240 35.8
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 1.7e-28 130.6 240 37.5
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 1.7e-28 130.6 247 35.2
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.7e-28 130.6 240 37.5
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 2.2e-28 130.2 200 43.0
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 2.9e-28 129.8 247 36.4
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 2.9e-28 129.8 247 36.4
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 2.9e-28 129.8 225 36.4
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 4.9e-28 129.0 228 36.8
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 6.4e-28 128.6 247 35.6
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 6.4e-28 128.6 218 36.7
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 6.4e-28 128.6 235 36.2
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 6.4e-28 128.6 234 36.8
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 8.3e-28 128.3 242 36.0
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 8.3e-28 128.3 241 37.3
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.1e-27 127.9 240 35.0
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 1.1e-27 127.9 234 39.3
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 1.1e-27 127.9 235 36.2
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 1.4e-27 127.5 240 35.0
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 1.9e-27 127.1 209 38.8
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 3.2e-27 126.3 231 37.2
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 3.2e-27 126.3 247 35.6
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.2e-27 126.3 202 39.1
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 5.4e-27 125.6 200 41.5
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 5.4e-27 125.6 232 36.2
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 9.2e-27 124.8 229 36.2
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 1.2e-26 124.4 250 35.6
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 2.1e-26 123.6 250 34.8
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 2.1e-26 123.6 212 36.3
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 6.0e-26 122.1 216 38.4
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 1.7e-25 120.6 182 40.1
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 1.7e-25 120.6 220 35.9
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 3.0e-25 119.8 220 35.5
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 3.9e-25 119.4 240 36.7
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 3.9e-25 119.4 240 33.3
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 6.6e-25 118.6 199 38.7
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 8.6e-25 118.2 245 33.9
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 1.1e-24 117.9 206 34.0
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 9.5e-24 114.8 207 36.7
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 2.8e-23 113.2 220 35.5
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 3.1e-22 109.8 222 32.9
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 3.1e-22 109.8 197 37.6
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.2e-21 107.8 264 31.8
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 1.5e-21 107.5 233 35.6
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 5.8e-21 105.5 179 40.8
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 5.8e-21 105.5 240 32.9
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 1.7e-20 104.0 201 30.3
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 1.1e-19 101.3 154 40.9
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 2.4e-19 100.1 183 32.2
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 4.1e-19 99.4 214 33.6
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 5.4e-19 99.0 175 38.3
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 2.7e-18 96.7 149 43.0
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 8.7e-17 91.7 240 30.4
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 8.1e-15 85.1 174 35.6
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 8.1e-15 85.1 151 35.8
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.1e-14 83.2 124 38.7
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.5e-13 80.9 127 37.8
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 3.8e-12 76.3 155 34.2
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 2.5e-08 63.5 104 33.7
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 2.8e-07 60.1 243 27.2
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 8.1e-07 58.5 82 41.5


User provided reference genes

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