Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0048s0041 Marchantia polymorpha HOM05D000533 ORTHO05D006151 1.6e-94 349.4 168 100.0
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 1.3e-56 223.4 180 62.2
Nn031s41615 Nelumbo nucifera HOM05D000533 ORTHO05D006151 3.8e-56 221.9 180 63.3
Nn064s42208 Nelumbo nucifera HOM05D000533 ORTHO05D006151 3.8e-56 221.9 180 63.3
Solyc03g013615.1 Solanum lycopersicum HOM05D000533 ORTHO05D006151 6.5e-56 221.1 164 64.0
PGR111G0107 Punica granatum HOM05D000533 ORTHO05D006151 2.5e-55 219.2 160 66.2
HanXRQChr00c0336g0573681 Helianthus annuus HOM05D000533 ORTHO05D006151 4.2e-55 218.4 164 65.2
HanXRQChr02g0059731 Helianthus annuus HOM05D000533 ORTHO05D006151 4.2e-55 218.4 164 65.2
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 4.2e-55 218.4 164 65.2
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 4.2e-55 218.4 164 65.2
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 4.2e-55 218.4 164 65.2
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 4.2e-55 218.4 164 65.2
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 4.2e-55 218.4 164 65.2
RcHm_v2.0_CPg0502751 Rosa chinensis HOM05D000533 ORTHO05D006151 4.2e-55 218.4 160 66.2
DCAR_018912 Daucus carota HOM05D000533 ORTHO05D006151 5.5e-55 218.0 161 66.5
DCAR_032540 Daucus carota HOM05D000533 ORTHO05D006151 5.5e-55 218.0 161 66.5
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 5.5e-55 218.0 164 65.9
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 5.5e-55 218.0 164 65.9
RcHm_v2.0_Chr5g0017191 Rosa chinensis HOM05D000533 ORTHO05D006151 5.5e-55 218.0 160 66.2
C09p24660 Brassica napus HOM05D000533 ORTHO05D006151 1.2e-54 216.9 167 63.5
C09p40170 Brassica napus HOM05D000533 ORTHO05D006151 1.2e-54 216.9 167 63.5
BolSC29t60508H Brassica oleracea HOM05D000533 ORTHO05D006151 1.2e-54 216.9 167 63.5
BolSC35t60690H Brassica oleracea HOM05D000533 ORTHO05D006151 1.2e-54 216.9 167 63.5
BolSC35t60706H Brassica oleracea HOM05D000533 ORTHO05D006151 1.2e-54 216.9 167 63.5
BraSC143t45658Z Brassica rapa HOM05D000533 ORTHO05D006151 1.2e-54 216.9 167 63.5
BraSC59t46553Z Brassica rapa HOM05D000533 ORTHO05D006151 1.2e-54 216.9 167 63.5
SalBow1G0791 Salvia bowleyana HOM05D000533 ORTHO05D006151 1.2e-54 216.9 160 67.5
AL9U11958 Arabidopsis lyrata HOM05D000533 ORTHO05D006151 1.6e-54 216.5 167 63.5
ATCG01090 Arabidopsis thaliana HOM05D000533 ORTHO05D006151 1.6e-54 216.5 167 63.5
CAN.G1045.11 Capsicum annuum HOM05D000533 ORTHO05D006151 2.1e-54 216.1 164 65.2
CAN.G1298.19 Capsicum annuum HOM05D000533 ORTHO05D006151 2.1e-54 216.1 164 65.2
CAN.G1526.2 Capsicum annuum HOM05D000533 ORTHO05D006151 2.1e-54 216.1 164 65.2
CAN.G278.1 Capsicum annuum HOM05D000533 ORTHO05D006151 2.1e-54 216.1 164 65.2
CAN.G413.10 Capsicum annuum HOM05D000533 ORTHO05D006151 2.1e-54 216.1 164 65.2
CAN.G939.4 Capsicum annuum HOM05D000533 ORTHO05D006151 2.1e-54 216.1 164 65.2
Lalb_Chr07g0191791 Lupinus albus HOM05D000533 ORTHO05D006151 2.7e-54 215.7 158 66.5
BolC2t10613H Brassica oleracea HOM05D000533 ORTHO05D006151 3.6e-54 215.3 167 62.9
PSO548G0083 Papaver somniferum HOM05D000533 ORTHO05D006151 3.6e-54 215.3 166 63.3
HanXRQChr09g0258491 Helianthus annuus HOM05D000533 ORTHO05D006151 4.6e-54 214.9 155 67.7
Ciclev10013971m.g Citrus clementina HOM05D000533 ORTHO05D006151 6.1e-54 214.5 160 64.4
Ciclev10013973m.g Citrus clementina HOM05D000533 ORTHO05D006151 6.1e-54 214.5 160 64.4
Migut.D01250 Erythranthe guttata HOM05D000533 ORTHO05D006151 6.1e-54 214.5 160 65.6
BolSC46t60956H Brassica oleracea HOM05D000533 ORTHO05D006151 7.9e-54 214.2 160 65.0
LjContig00318g0022534 Lotus japonicus HOM05D000533 ORTHO05D006151 7.9e-54 214.2 158 65.2
LjContig00319g0019672 Lotus japonicus HOM05D000533 ORTHO05D006151 7.9e-54 214.2 158 65.2
Lj2P1238T111 Lonicera japonica HOM05D000533 ORTHO05D006151 1.0e-53 213.8 164 64.0
Lju5009P0T51 Lonicera japonica HOM05D000533 ORTHO05D006151 1.0e-53 213.8 164 64.0
Medtr3g450170 Medicago truncatula HOM05D000533 ORTHO05D006151 1.8e-53 213.0 158 65.2
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 1.8e-53 213.0 158 65.2
Medtr6g042210 Medicago truncatula HOM05D000533 ORTHO05D006151 1.8e-53 213.0 158 65.2
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 1.8e-53 213.0 158 65.2
BolSC47t61063H Brassica oleracea HOM05D000533 ORTHO05D006151 2.3e-53 212.6 161 65.8
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 3.0e-53 212.2 158 65.2
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 3.0e-53 212.2 158 65.2
Psat6g140640 Pisum sativum HOM05D000533 ORTHO05D006151 3.0e-53 212.2 158 65.2
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 6.7e-53 211.1 158 65.2
Gohir.A08G123600 Gossypium hirsutum HOM05D000533 ORTHO05D006151 8.8e-53 210.7 160 61.9
BolSC45t60907H Brassica oleracea HOM05D000533 ORTHO05D006151 5.7e-52 208.0 159 64.8
C02p28830 Brassica napus HOM05D000533 ORTHO05D006151 1.3e-51 206.8 167 61.1
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 6.3e-51 204.5 142 67.6
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 8.2e-51 204.1 160 63.1
Psat4g190120 Pisum sativum HOM05D000533 ORTHO05D006151 2.4e-50 202.6 158 62.7
Nn1g00559 Nelumbo nucifera HOM05D000533 ORTHO05D006151 3.4e-49 198.7 171 61.4
QL93p0141_0017 Quercus lobata HOM05D000533 ORTHO05D006151 7.7e-49 197.6 160 59.4
Solyc11g021220.2 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.0e-48 197.2 144 66.0
HanXRQChr00c0718g0576981 Helianthus annuus HOM05D000533 ORTHO05D006151 7.2e-47 191.0 164 59.1
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 1.8e-45 186.4 110 74.5
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 2.3e-45 186.0 107 75.7
Medtr3g054410 Medicago truncatula HOM05D000533 ORTHO05D006151 3.0e-45 185.7 133 64.7
Gohir.A09G046292 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.0e-44 183.0 160 55.6
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 2.6e-44 182.6 107 74.8
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 9.7e-44 180.6 112 72.3
TPR.G38950 Trifolium pratense HOM05D000533 ORTHO05D006151 2.2e-43 179.5 131 63.4
HanXRQChr13g0413911 Helianthus annuus HOM05D000533 ORTHO05D006151 8.2e-43 177.6 132 64.4
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 1.4e-42 176.8 147 59.9
HanXRQChr13g0413691 Helianthus annuus HOM05D000533 ORTHO05D006151 7.0e-42 174.5 132 63.6
HanXRQChr13g0413761 Helianthus annuus HOM05D000533 ORTHO05D006151 7.0e-42 174.5 132 63.6
HanXRQChr13g0413841 Helianthus annuus HOM05D000533 ORTHO05D006151 7.0e-42 174.5 132 63.6
HanXRQChr00c0495g0575151 Helianthus annuus HOM05D000533 ORTHO05D006151 9.1e-42 174.1 156 56.4
Aqoxy4G02725 Aquilegia oxysepala HOM05D000533 ORTHO05D006151 3.5e-41 172.2 103 73.8
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 7.7e-41 171.0 103 72.8
SMO086G0041 Selaginella moellendorffii HOM05D000533 ORTHO05D006151 4.2e-39 165.2 174 50.6
Gohir.1Z049779 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.7e-38 162.5 134 59.7
BolSC29t60548H Brassica oleracea HOM05D000533 ORTHO05D006151 4.0e-37 158.7 94 74.5
BolSC49t61145H Brassica oleracea HOM05D000533 ORTHO05D006151 5.2e-37 158.3 94 74.5
BraSC103t45431Z Brassica rapa HOM05D000533 ORTHO05D006151 5.2e-37 158.3 94 74.5
C09p40320 Brassica napus HOM05D000533 ORTHO05D006151 6.7e-37 157.9 92 76.1
CARHR282460 Cardamine hirsuta HOM05D000533 ORTHO05D006151 6.7e-37 157.9 92 76.1
BraSC179t45772Z Brassica rapa HOM05D000533 ORTHO05D006151 8.8e-37 157.5 94 74.5
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 8.8e-37 157.5 94 73.4
Psat1g104880 Pisum sativum HOM05D000533 ORTHO05D006151 1.1e-36 157.1 97 71.1
Gohir.D11G334051 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.5e-36 156.8 97 71.1
BolSC44t60824H Brassica oleracea HOM05D000533 ORTHO05D006151 2.6e-36 156.0 91 75.8
Gohir.A04G053104 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.3e-35 153.7 92 73.9
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 8.2e-35 151.0 154 55.2
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 8.2e-35 151.0 154 55.2
Gohir.D06G133750 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.8e-34 149.8 91 71.4
C07p33460 Brassica napus HOM05D000533 ORTHO05D006151 2.4e-34 149.4 118 65.3
Medtr5g015855 Medicago truncatula HOM05D000533 ORTHO05D006151 2.4e-34 149.4 113 66.4
Nitab4.5_0007979g0080 Nicotiana tabacum HOM05D000533 ORTHO05D006151 2.4e-34 149.4 138 57.2
Gohir.D03G073128 Gossypium hirsutum HOM05D000533 ORTHO05D006151 4.1e-34 148.7 94 71.3
Lsat_1_v5_gn_4_118101 Lactuca sativa HOM05D000533 ORTHO05D006151 5.3e-34 148.3 138 55.1
Manes.17G012402 Manihot esculenta HOM05D000533 ORTHO05D006151 7.0e-34 147.9 159 51.6
Glyma.18G155500 Glycine max HOM05D000533 ORTHO05D006151 2.7e-33 146.0 92 68.5
Gohir.A11G178850 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.7e-33 146.0 91 71.4
HanXRQChr13g0421831 Helianthus annuus HOM05D000533 ORTHO05D006151 4.5e-33 145.2 115 63.5
Gohir.A06G128502 Gossypium hirsutum HOM05D000533 ORTHO05D006151 5.9e-33 144.8 99 64.6
HanXRQChr01g0000261 Helianthus annuus HOM05D000533 ORTHO05D006151 2.5e-31 139.4 77 79.2
HanXRQChr15g0464661 Helianthus annuus HOM05D000533 ORTHO05D006151 7.2e-31 137.9 77 79.2
QL93p0957_0002 Quercus lobata HOM05D000533 ORTHO05D006151 7.2e-31 137.9 97 70.1
Gorai.002G166200 Gossypium raimondii HOM05D000533 ORTHO05D006151 2.1e-30 136.3 91 64.8
Ciclev10010202m.g Citrus clementina HOM05D000533 ORTHO05D006151 4.7e-30 135.2 106 60.4
HanXRQChr00c0328g0573621 Helianthus annuus HOM05D000533 ORTHO05D006151 1.2e-28 130.6 77 76.6
Psat0s411g0080 Pisum sativum HOM05D000533 ORTHO05D006151 2.6e-28 129.4 91 64.8
GSVIVG01029923001 Vitis vinifera HOM05D000533 ORTHO05D006151 1.3e-27 127.1 85 65.9
Solyc02g011780.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.7e-27 126.7 138 50.0
Ciclev10030456m.g Citrus clementina HOM05D000533 ORTHO05D006151 2.2e-27 126.3 72 77.8
HanXRQChr05g0152461 Helianthus annuus HOM05D000533 ORTHO05D006151 5.4e-26 121.7 92 64.1
Peaxi162Scf00137g00153 Petunia axillaris HOM05D000533 ORTHO05D006151 7.0e-26 121.3 96 61.5
Medtr5g063400 Medicago truncatula HOM05D000533 ORTHO05D006151 1.6e-25 120.2 94 61.7
MELO3C000180.2 Cucumis melo HOM05D000533 ORTHO05D006151 2.2e-24 116.3 65 76.9
Psat0s1160g0360 Pisum sativum HOM05D000533 ORTHO05D006151 2.2e-24 116.3 69 73.9
HanXRQChr02g0037961 Helianthus annuus HOM05D000533 ORTHO05D006151 2.9e-24 115.9 97 58.8
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 1.1e-23 114.0 92 59.8
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 1.1e-23 114.0 92 59.8
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 1.1e-23 114.0 92 59.8
MELO3C031835.2 Cucumis melo HOM05D000533 ORTHO05D006151 1.2e-22 110.5 65 72.3
Lsat_1_v5_gn_6_54141 Lactuca sativa HOM05D000533 ORTHO05D006151 6.8e-21 104.8 96 58.3
Lalb_Chr09g0335441 Lupinus albus HOM05D000533 ORTHO05D006151 2.6e-20 102.8 158 39.2
Lalb_Chr19g0130301 Lupinus albus HOM05D000533 ORTHO05D006151 2.2e-19 99.8 86 54.7
Haze_27676 Corylus avellana HOM05D000533 ORTHO05D006151 4.9e-19 98.6 88 54.5
Migut.D01385 Erythranthe guttata HOM05D000533 ORTHO05D006151 4.9e-19 98.6 137 43.1
HanXRQChr02g0037941 Helianthus annuus HOM05D000003 ORTHO05D000004 1.1e-18 97.4 81 58.0
ClCG07G005240 Citrullus lanatus HOM05D000533 ORTHO05D006151 1.6e-17 93.6 89 52.8
BolSC37t60795H Brassica oleracea HOM05D000533 ORTHO05D006151 5.6e-15 85.1 54 70.4
HanXRQChr01g0020061 Helianthus annuus HOM05D000533 ORTHO05D006151 5.6e-15 85.1 79 55.7
BolC2t10598H Brassica oleracea HOM05D000533 ORTHO05D006151 1.6e-14 83.6 54 68.5
BolC9t56914H Brassica oleracea HOM05D000533 ORTHO05D006151 2.1e-14 83.2 53 69.8
BolC2t08928H Brassica oleracea HOM05D000533 ORTHO05D006151 3.6e-14 82.4 53 69.8
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 8.0e-14 81.3 72 56.9
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 3.0e-13 79.3 43 81.4
BraSC138t45533Z Brassica rapa HOM05D000533 ORTHO05D006151 1.5e-12 77.0 76 51.3
Eucgr.H02873 Eucalyptus grandis HOM05D000533 ORTHO05D006151 2.6e-12 76.3 64 48.4
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 2.6e-12 76.3 74 51.4
MELO3C029885.2 Cucumis melo HOM05D000533 ORTHO05D006151 5.7e-12 75.1 48 66.7
Medtr4g070120 Medicago truncatula HOM05D000533 ORTHO05D006151 5.7e-12 75.1 66 53.0
BraSC58t46463Z Brassica rapa HOM05D000533 ORTHO05D006151 1.4e-10 70.5 45 66.7
Potri.013G074950 Populus trichocarpa HOM05D000533 ORTHO05D006151 2.0e-09 66.6 47 57.4
Solyc01g086880.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 5.9e-09 65.1 70 45.7
Gohir.D01G099050 Gossypium hirsutum HOM05D000533 ORTHO05D006151 6.6e-08 61.6 38 76.3
Lalb_Chr18g0049621 Lupinus albus HOM05D000533 ORTHO05D006151 3.6e-06 55.8 55 49.1
BolSC37t60802H Brassica oleracea HOM05D000533 ORTHO05D006151 8.0e-06 54.7 29 79.3
Medtr8g086030 Medicago truncatula HOM05D000533 ORTHO05D006151 8.0e-06 54.7 52 51.9


User provided reference genes

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