Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0048s0020 Marchantia polymorpha HOM05D003963 ORTHO05D004558 2.6e-245 852.4 748 100.0
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 1.4e-28 132.5 395 35.9
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 2.4e-25 121.7 408 34.1
AagrBONN_evm.TU.Sc2ySwM_117.4020 Anthoceros agrestis HOM05D031910 ORTHO05D004558 3.6e-13 81.3 111 48.6
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 2.6e-11 75.1 241 33.2
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 3.3e-11 74.7 314 29.6
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 2.8e-10 71.6 127 43.3
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 6.3e-10 70.5 165 35.8
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.1e-09 69.7 156 37.8
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.1e-09 69.7 123 39.0
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 1.4e-09 69.3 123 39.8
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 1.4e-09 69.3 275 29.1
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 2.4e-09 68.6 123 40.7
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 2.4e-09 68.6 165 35.2
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 2.4e-09 68.6 122 37.7
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 3.1e-09 68.2 134 38.1
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 4.1e-09 67.8 123 39.8
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 4.1e-09 67.8 125 40.8
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 4.1e-09 67.8 123 37.4
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 5.3e-09 67.4 124 39.5
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 5.3e-09 67.4 123 39.0
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 5.3e-09 67.4 129 41.9
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 5.3e-09 67.4 249 30.5
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 7.0e-09 67.0 184 33.2
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 7.0e-09 67.0 124 40.3
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 7.0e-09 67.0 122 37.7
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 9.1e-09 66.6 123 37.4
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 1.2e-08 66.2 123 37.4
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 1.2e-08 66.2 217 31.3
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 1.6e-08 65.9 125 39.2
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 1.6e-08 65.9 261 31.4
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 1.6e-08 65.9 125 42.4
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 2.0e-08 65.5 161 33.5
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 2.0e-08 65.5 123 36.6
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 2.0e-08 65.5 123 36.6
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 2.0e-08 65.5 177 35.6
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 2.0e-08 65.5 123 37.4
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 2.6e-08 65.1 123 37.4
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 3.5e-08 64.7 194 32.0
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 3.5e-08 64.7 121 38.0
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 3.5e-08 64.7 123 39.8
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 3.5e-08 64.7 123 39.0
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 4.5e-08 64.3 123 39.0
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 4.5e-08 64.3 123 38.2
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 4.5e-08 64.3 123 37.4
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 4.5e-08 64.3 216 31.0
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 5.9e-08 63.9 123 36.6
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 5.9e-08 63.9 231 30.7
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 7.7e-08 63.5 123 39.8
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 7.7e-08 63.5 123 39.0
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.0e-07 63.2 198 29.3
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 1.0e-07 63.2 130 40.8
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.3e-07 62.8 139 38.1
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.3e-07 62.8 139 38.1
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 1.3e-07 62.8 123 38.2
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 1.3e-07 62.8 182 32.4
Os06g0523100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 1.3e-07 62.8 132 40.2
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 1.3e-07 62.8 124 39.5
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.7e-07 62.4 123 38.2
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 1.7e-07 62.4 122 36.9
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 1.7e-07 62.4 123 38.2
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 1.7e-07 62.4 182 32.4
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 2.2e-07 62.0 232 28.4
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 2.2e-07 62.0 121 39.7
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 2.2e-07 62.0 124 40.3
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 2.2e-07 62.0 186 30.6
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 2.2e-07 62.0 182 30.8
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 2.2e-07 62.0 162 35.8
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 2.2e-07 62.0 163 36.8
CDE04G3080 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 2.9e-07 61.6 59 57.6
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 2.9e-07 61.6 186 30.6
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 2.9e-07 61.6 150 35.3
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 2.9e-07 61.6 240 32.9
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 3.8e-07 61.2 59 57.6
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 5.0e-07 60.8 131 38.9
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 5.0e-07 60.8 135 40.7
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 5.0e-07 60.8 172 35.5
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 6.5e-07 60.5 122 35.2
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 6.5e-07 60.5 109 36.7
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 8.5e-07 60.1 129 33.3
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 8.5e-07 60.1 126 37.3
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 8.5e-07 60.1 127 37.8
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 8.5e-07 60.1 149 36.9
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 1.1e-06 59.7 195 30.8
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 1.1e-06 59.7 202 32.2
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 1.1e-06 59.7 220 33.2
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 1.1e-06 59.7 158 34.2
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.1e-06 59.7 187 28.9
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 1.1e-06 59.7 182 30.8
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 1.1e-06 59.7 182 30.8
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 1.1e-06 59.7 128 38.3
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 1.5e-06 59.3 208 29.8
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 1.5e-06 59.3 191 32.5
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.5e-06 59.3 122 36.9
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.5e-06 59.3 182 29.7
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 1.5e-06 59.3 122 36.1
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 1.9e-06 58.9 122 37.7
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 1.9e-06 58.9 195 30.8
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 1.9e-06 58.9 117 36.8
DCAR_006852 Daucus carota HOM05D003548 ORTHO05D004066 1.9e-06 58.9 61 52.5
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 1.9e-06 58.9 64 48.4
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 1.9e-06 58.9 123 37.4
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 1.9e-06 58.9 69 50.7
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 2.5e-06 58.5 195 29.7
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 2.5e-06 58.5 134 36.6
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.5e-06 58.5 122 35.2
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 2.5e-06 58.5 122 35.2
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 2.5e-06 58.5 62 50.0
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 2.5e-06 58.5 136 39.0
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 2.5e-06 58.5 215 29.3
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 3.2e-06 58.2 237 30.4
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 4.2e-06 57.8 213 31.5
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 4.2e-06 57.8 126 35.7
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 4.2e-06 57.8 128 34.4
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 4.2e-06 57.8 203 30.0
HPP92_006483 Vanilla planifolia HOM05D003548 ORTHO05D004066 4.2e-06 57.8 57 57.9
Oeu063042.1 Olea europaea HOM05D003548 ORTHO05D004066 5.5e-06 57.4 67 50.7
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 5.5e-06 57.4 200 32.0
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 7.2e-06 57.0 203 32.0
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 7.2e-06 57.0 211 28.4
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 7.2e-06 57.0 65 50.8
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 9.4e-06 56.6 195 31.8
Dinv37570 Davidia involucrata HOM05D003548 ORTHO05D004066 9.4e-06 56.6 127 35.4
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 9.4e-06 56.6 162 34.6
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 9.4e-06 56.6 123 36.6
TWI60G0243 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 9.4e-06 56.6 190 30.5


User provided reference genes

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