Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0047s0058 Marchantia polymorpha HOM05D010830 ORTHO05D013093 1.7e-79 299.3 150 100.0
Mapoly0047s0059 Marchantia polymorpha HOM05D010830 ORTHO05D013093 1.7e-79 299.3 150 100.0
Mapoly0047s0060 Marchantia polymorpha HOM05D010830 ORTHO05D013093 1.7e-79 299.3 150 100.0
Mapoly0059s0072 Marchantia polymorpha HOM05D010830 ORTHO05D013093 4.4e-56 221.5 150 70.0
Mapoly0016s0002 Marchantia polymorpha HOM05D010830 ORTHO05D013093 7.1e-54 214.2 149 68.5
Mapoly0152s0003 Marchantia polymorpha HOM05D010830 ORTHO05D013093 7.1e-54 214.2 149 68.5
Mapoly0059s0071 Marchantia polymorpha HOM05D010830 ORTHO05D013093 3.5e-53 211.8 147 68.7
Mapoly0053s0049 Marchantia polymorpha HOM05D010830 ORTHO05D013093 4.6e-53 211.5 150 68.7
Mapoly0016s0001 Marchantia polymorpha HOM05D010830 ORTHO05D013093 6.0e-53 211.1 148 68.2
Mapoly0152s0002 Marchantia polymorpha HOM05D010830 ORTHO05D013093 6.0e-53 211.1 148 68.2
Mapoly0135s0042 Marchantia polymorpha HOM05D010830 ORTHO05D013093 1.2e-48 196.8 150 62.0
Mapoly0135s0046 Marchantia polymorpha HOM05D010830 ORTHO05D013093 2.1e-45 186.0 150 61.3
Mapoly0333s0001 Marchantia polymorpha HOM05D010830 ORTHO05D013093 3.5e-45 185.3 150 62.0
Mapoly0047s0061 Marchantia polymorpha HOM05D010830 ORTHO05D013093 1.7e-44 183.0 93 98.9
Mapoly0135s0043 Marchantia polymorpha HOM05D010830 ORTHO05D013093 8.7e-44 180.6 147 60.5
Mapoly0060s0115 Marchantia polymorpha HOM05D010830 ORTHO05D013093 2.5e-43 179.1 149 59.1
Mapoly0024s0020 Marchantia polymorpha HOM05D010830 ORTHO05D013093 6.5e-23 111.3 144 40.3
Mapoly0072s0041 Marchantia polymorpha HOM05D010830 ORTHO05D013093 9.0e-17 90.9 141 39.0
FAN14G0740 Fragaria x ananassa HOM05D000180 ORTHO05D000099 6.7e-12 74.7 151 33.1
Mapoly0121s0040 Marchantia polymorpha HOM05D010830 ORTHO05D013093 1.5e-11 73.6 144 33.3
FvH4_7g31480 Fragaria vesca HOM05D000180 ORTHO05D000099 1.9e-11 73.2 151 35.1
FAN06G0338 Fragaria x ananassa HOM05D000180 ORTHO05D000099 1.9e-11 73.2 151 35.1
FAN06G1956 Fragaria x ananassa HOM05D000180 ORTHO05D000099 1.9e-11 73.2 151 35.1
FvH4_6g42490 Fragaria vesca HOM05D000180 ORTHO05D000099 3.3e-11 72.4 151 32.5
QL08p032297 Quercus lobata HOM05D000180 ORTHO05D000099 4.3e-11 72.0 150 33.3
COL.COLO4_30591 Corchorus olitorius HOM05D000180 ORTHO05D000099 1.3e-10 70.5 152 31.6
Duzib235G0259 Durio zibethinus HOM05D000180 ORTHO05D000099 1.7e-10 70.1 150 31.3
Hma1.2p1_0895F.1_g233830 Hydrangea macrophylla HOM05D000180 ORTHO05D000099 2.2e-10 69.7 151 30.5
Pp3c13_12170 Physcomitrium patens HOM05D000180 ORTHO05D000099 2.2e-10 69.7 147 29.9
RcHm_v2.0_Chr2g0158891 Rosa chinensis HOM05D000180 ORTHO05D000099 2.2e-10 69.7 150 33.3
Gorai.008G200500 Gossypium raimondii HOM05D000180 ORTHO05D000099 6.3e-10 68.2 152 32.9
SEGI_17706 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 8.2e-10 67.8 145 31.0
COL.COLO4_21369 Corchorus olitorius HOM05D000180 ORTHO05D000099 1.1e-09 67.4 152 32.2
FAN09G0337 Fragaria x ananassa HOM05D000180 ORTHO05D000099 1.1e-09 67.4 149 32.9
FAN09G1602 Fragaria x ananassa HOM05D000180 ORTHO05D000099 1.4e-09 67.0 153 32.0
FAN10G1413 Fragaria x ananassa HOM05D000180 ORTHO05D000099 2.4e-09 66.2 151 33.8
FAN10G3022 Fragaria x ananassa HOM05D000180 ORTHO05D000099 2.4e-09 66.2 151 33.8
SMO304G0105 Selaginella moellendorffii HOM05D000180 ORTHO05D000099 2.4e-09 66.2 143 30.8
FAN02G4293 Fragaria x ananassa HOM05D000180 ORTHO05D000099 3.1e-09 65.9 153 32.0
FAN14G5554 Fragaria x ananassa HOM05D000180 ORTHO05D000099 3.1e-09 65.9 144 30.6
Gohir.A12G184300 Gossypium hirsutum HOM05D000180 ORTHO05D000099 4.1e-09 65.5 152 31.6
FvH4_6g42510 Fragaria vesca HOM05D000180 ORTHO05D000099 1.2e-08 63.9 144 29.9
SMO331G0078 Selaginella moellendorffii HOM05D000180 ORTHO05D000099 1.2e-08 63.9 118 33.1
vmacro17640 Vaccinium macrocarpon HOM05D000180 ORTHO05D000099 1.2e-08 63.9 149 30.9
COL.COLO4_30587 Corchorus olitorius HOM05D000180 ORTHO05D000099 2.0e-08 63.2 154 31.8
MBI09_g25279_MAGBIO Magnolia biondii HOM05D000180 ORTHO05D000099 2.0e-08 63.2 140 31.4
RcHm_v2.0_Chr2g0158911 Rosa chinensis HOM05D000180 ORTHO05D000099 2.0e-08 63.2 126 36.5
Zm00001eb067090 Zea mays HOM05D000180 ORTHO05D000099 2.6e-08 62.8 150 32.0
COL.COLO4_30592 Corchorus olitorius HOM05D000180 ORTHO05D000099 3.4e-08 62.4 148 31.1
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 4.5e-08 62.0 155 31.0
Migut.D00792 Erythranthe guttata HOM05D000180 ORTHO05D000099 4.5e-08 62.0 149 29.5
Gohir.A10G062800 Gossypium hirsutum HOM05D000180 ORTHO05D000099 4.5e-08 62.0 151 32.5
PGR004G0710 Punica granatum HOM05D000180 ORTHO05D000099 4.5e-08 62.0 148 32.4
COL.COLO4_30586 Corchorus olitorius HOM05D000180 ORTHO05D000099 5.9e-08 61.6 150 31.3
FAN05G1781 Fragaria x ananassa HOM05D000180 ORTHO05D000099 5.9e-08 61.6 151 29.1
Mapoly0078s0058 Marchantia polymorpha HOM05D014630 ORTHO05D000099 5.9e-08 61.6 125 32.0
SMO141G0257 Selaginella moellendorffii HOM05D000180 ORTHO05D000099 5.9e-08 61.6 138 32.6
ATR0081G048 Amborella trichopoda HOM05D000180 ORTHO05D000099 7.7e-08 61.2 149 30.9
Aqoxy3G03747 Aquilegia oxysepala HOM05D000180 ORTHO05D000099 7.7e-08 61.2 151 33.1
Aqoxy4G02321 Aquilegia oxysepala HOM05D000180 ORTHO05D000099 7.7e-08 61.2 153 33.3
Manes.13G098600 Manihot esculenta HOM05D000180 ORTHO05D000099 7.7e-08 61.2 150 29.3
PGR004G1159 Punica granatum HOM05D000180 ORTHO05D000099 7.7e-08 61.2 122 36.9
QL08p021396 Quercus lobata HOM05D000180 ORTHO05D000099 7.7e-08 61.2 145 30.3
SMO347G0300 Selaginella moellendorffii HOM05D000180 ORTHO05D000099 7.7e-08 61.2 117 34.2
ECA247G1349 Erigeron canadensis HOM05D000180 ORTHO05D000099 1.0e-07 60.8 143 32.2
vmacro02263 Vaccinium macrocarpon HOM05D000180 ORTHO05D000099 1.0e-07 60.8 154 33.1
CiPaw.15G114000 Carya illinoinensis HOM05D000180 ORTHO05D000099 1.3e-07 60.5 151 31.1
Rhsim01G0212900 Rhododendron simsii HOM05D006174 ORTHO05D007987 1.3e-07 60.5 136 32.4
FAN14G4538 Fragaria x ananassa HOM05D000180 ORTHO05D000099 1.7e-07 60.1 153 29.4
Thecc.03G108200 Theobroma cacao HOM05D000180 ORTHO05D000099 1.7e-07 60.1 152 29.6
CSS0019864 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 2.2e-07 59.7 150 28.7
Prupe.3G215600 Prunus persica HOM05D000180 ORTHO05D000099 2.2e-07 59.7 152 30.3
SEGI_27732 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 2.2e-07 59.7 145 30.3
COL.COLO4_07467 Corchorus olitorius HOM05D000180 ORTHO05D000099 3.8e-07 58.9 155 32.3
Nn3g17534 Nelumbo nucifera HOM05D000180 ORTHO05D000099 3.8e-07 58.9 149 31.5
Rhsim11G0190000 Rhododendron simsii HOM05D000180 ORTHO05D000099 3.8e-07 58.9 152 32.9
ATR0081G021 Amborella trichopoda HOM05D000180 ORTHO05D000099 5.0e-07 58.5 149 29.5
Gohir.D10G064500 Gossypium hirsutum HOM05D000180 ORTHO05D000099 5.0e-07 58.5 151 31.8
Hma1.2p1_0595F.1_g186270 Hydrangea macrophylla HOM05D000180 ORTHO05D000099 5.0e-07 58.5 150 29.3
Thecc.06G106300 Theobroma cacao HOM05D000180 ORTHO05D000099 5.0e-07 58.5 151 31.1
arahy.Tifrunner.gnm1.ann1.FTV255 Arachis hypogaea HOM05D000180 ORTHO05D000099 6.5e-07 58.2 150 28.0
Lsat_1_v5_gn_8_124840 Lactuca sativa HOM05D000180 ORTHO05D000099 6.5e-07 58.2 149 29.5
SalBow8G3669 Salvia bowleyana HOM05D000180 ORTHO05D000099 6.5e-07 58.2 141 31.2
SalBow8G4372 Salvia bowleyana HOM05D000180 ORTHO05D000099 6.5e-07 58.2 141 31.2
TWI79G1603 Tripterygium wilfordii HOM05D000180 ORTHO05D000099 6.5e-07 58.2 132 31.1
AagrBONN_evm.TU.Sc2ySwM_228.2903 Anthoceros agrestis HOM05D000180 ORTHO05D000099 8.5e-07 57.8 128 32.0
Duzib068G0783 Durio zibethinus HOM05D000180 ORTHO05D000099 8.5e-07 57.8 157 30.6
ECA246G4942 Erigeron canadensis HOM05D000593 ORTHO05D000099 8.5e-07 57.8 138 31.2
FAN05G0464 Fragaria x ananassa HOM05D000180 ORTHO05D000099 8.5e-07 57.8 152 29.6
Manes.06G081000 Manihot esculenta HOM05D000180 ORTHO05D000099 8.5e-07 57.8 143 31.5
QL03p039396 Quercus lobata HOM05D000180 ORTHO05D000099 8.5e-07 57.8 133 35.3
QL08p021381 Quercus lobata HOM05D000180 ORTHO05D000099 8.5e-07 57.8 128 32.8
SMO111G0080 Selaginella moellendorffii HOM05D001508 ORTHO05D001381 8.5e-07 57.8 147 34.0
Gorai.011G068500 Gossypium raimondii HOM05D000180 ORTHO05D000099 1.1e-06 57.4 151 31.1
Rhsim11G0189700 Rhododendron simsii HOM05D000180 ORTHO05D000099 1.1e-06 57.4 152 32.9
Haze_20043 Corylus avellana HOM05D000180 ORTHO05D000099 1.4e-06 57.0 127 29.9
Eucgr.A02485 Eucalyptus grandis HOM05D000180 ORTHO05D000099 1.4e-06 57.0 152 32.9
Mapoly0009s0115 Marchantia polymorpha HOM05D000180 ORTHO05D000099 1.4e-06 57.0 135 36.3
PSO384G1032 Papaver somniferum HOM05D000180 ORTHO05D000099 1.4e-06 57.0 149 29.5
Pp3c6_6545 Physcomitrium patens HOM05D021719 ORTHO05D000099 1.4e-06 57.0 149 28.9
vmacro04577 Vaccinium macrocarpon HOM05D000180 ORTHO05D000099 1.4e-06 57.0 149 30.9
FvH4_6g42930 Fragaria vesca HOM05D000180 ORTHO05D000099 1.9e-06 56.6 144 29.9
Lsat_1_v5_gn_1_15201 Lactuca sativa HOM05D000180 ORTHO05D000099 1.9e-06 56.6 149 28.9
Lsat_1_v5_gn_1_60060 Lactuca sativa HOM05D000180 ORTHO05D000099 1.9e-06 56.6 151 31.1
QL07p024822 Quercus lobata HOM05D000180 ORTHO05D000099 1.9e-06 56.6 152 30.9
TWI60G0860 Tripterygium wilfordii HOM05D000180 ORTHO05D000099 1.9e-06 56.6 148 29.7
TWI60G1496 Tripterygium wilfordii HOM05D000180 ORTHO05D000099 1.9e-06 56.6 148 29.7
vmacro02261 Vaccinium macrocarpon HOM05D000180 ORTHO05D000099 1.9e-06 56.6 154 31.8
ATR1026G001 Amborella trichopoda HOM05D000180 ORTHO05D000099 2.5e-06 56.2 151 29.8
Lsat_1_v5_gn_6_36240 Lactuca sativa HOM05D000180 ORTHO05D000099 2.5e-06 56.2 150 29.3
Nn2g15760 Nelumbo nucifera HOM05D000180 ORTHO05D000099 2.5e-06 56.2 151 29.1
Oeu024496.1 Olea europaea HOM05D000180 ORTHO05D000099 2.5e-06 56.2 153 32.7
Os12g0174700 Oryza sativa ssp. japonica HOM05D000180 ORTHO05D000099 2.5e-06 56.2 141 31.9
PSO339G3545 Papaver somniferum HOM05D000180 ORTHO05D000099 2.5e-06 56.2 149 29.5
Potri.001G214600 Populus trichocarpa HOM05D000180 ORTHO05D000099 2.5e-06 56.2 151 28.5
Prupe.3G215100 Prunus persica HOM05D000180 ORTHO05D000099 2.5e-06 56.2 151 28.5
Rhsim06G0222200 Rhododendron simsii HOM05D000180 ORTHO05D000099 2.5e-06 56.2 154 31.8
SalBow6G0848 Salvia bowleyana HOM05D000180 ORTHO05D000099 2.5e-06 56.2 138 29.7
SEGI_02512 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 2.5e-06 56.2 135 28.9
ATR0810G234 Amborella trichopoda HOM05D000180 ORTHO05D000099 3.2e-06 55.8 134 32.8
MD05G1117600 Malus domestica HOM05D000180 ORTHO05D000099 3.2e-06 55.8 144 29.2
PGSC0003DMG400041872 Solanum tuberosum HOM05D000180 ORTHO05D000099 3.2e-06 55.8 145 32.4
Eucgr.A02487 Eucalyptus grandis HOM05D000180 ORTHO05D000099 4.2e-06 55.5 147 33.3
Actinidia20491 Actinidia chinensis HOM05D000180 ORTHO05D000099 5.5e-06 55.1 148 30.4
ATR0897G001 Amborella trichopoda HOM05D000180 ORTHO05D000099 5.5e-06 55.1 134 32.1
AagrBONN_evm.TU.Sc2ySwM_228.5024 Anthoceros agrestis HOM05D000180 ORTHO05D000099 5.5e-06 55.1 139 30.9
Cfa020134 Carpinus fangiana HOM05D000180 ORTHO05D000099 5.5e-06 55.1 149 29.5
COL.COLO4_27494 Corchorus olitorius HOM05D000180 ORTHO05D009692 5.5e-06 55.1 135 30.4
Dinv05413 Davidia involucrata HOM05D000180 ORTHO05D000099 5.5e-06 55.1 152 29.6
Migut.O00816 Erythranthe guttata HOM05D000180 ORTHO05D000099 5.5e-06 55.1 141 28.4
Lalb_Chr03g0028631 Lupinus albus HOM05D000180 ORTHO05D000099 5.5e-06 55.1 142 31.0
MBI17_g06058_MAGBIO Magnolia biondii HOM05D000180 ORTHO05D000099 5.5e-06 55.1 146 30.1
Os11g0179500 Oryza sativa ssp. japonica HOM05D000180 ORTHO05D000099 5.5e-06 55.1 127 30.7
PSO729G0280 Papaver somniferum HOM05D000180 ORTHO05D000099 5.5e-06 55.1 154 32.5
Atru.chr4.1594 Acer truncatum HOM05D000180 ORTHO05D000099 7.2e-06 54.7 152 27.6
COL.COLO4_30585 Corchorus olitorius HOM05D000180 ORTHO05D000099 7.2e-06 54.7 135 34.1
HanXRQChr17g0553831 Helianthus annuus HOM05D000180 ORTHO05D000099 7.2e-06 54.7 139 30.9
Mapoly0154s0009 Marchantia polymorpha HOM05D030815 ORTHO05D255570 7.2e-06 54.7 144 34.0
Nn7g36448 Nelumbo nucifera HOM05D000180 ORTHO05D000099 7.2e-06 54.7 149 28.9
SEGI_35627 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 7.2e-06 54.7 125 30.4
SGA_v2.0_scaffold58G20416 Striga asiatica HOM05D000180 ORTHO05D000099 7.2e-06 54.7 150 28.0
THA.LOC104799280 Tarenaya hassleriana HOM05D000180 ORTHO05D000099 7.2e-06 54.7 153 31.4
Thecc.02G064700 Theobroma cacao HOM05D000180 ORTHO05D000099 7.2e-06 54.7 151 31.1
TAR633G1081 Trochodendron aralioides HOM05D000180 ORTHO05D000099 7.2e-06 54.7 149 30.2
EL10Ac9g21423 Beta vulgaris HOM05D000180 ORTHO05D000099 9.4e-06 54.3 144 31.9
Migut.N01592 Erythranthe guttata HOM05D000180 ORTHO05D000099 9.4e-06 54.3 141 30.5
Hma1.2p1_0645F.1_g194980 Hydrangea macrophylla HOM05D000180 ORTHO05D000099 9.4e-06 54.3 153 30.7
Lsat_1_v5_gn_8_124860 Lactuca sativa HOM05D000180 ORTHO05D000099 9.4e-06 54.3 149 28.9
Lsat_1_v5_gn_8_125180 Lactuca sativa HOM05D000180 ORTHO05D000099 9.4e-06 54.3 149 30.2
Nn2g15759 Nelumbo nucifera HOM05D000180 ORTHO05D000099 9.4e-06 54.3 149 27.5
Nn7g35941 Nelumbo nucifera HOM05D000180 ORTHO05D000099 9.4e-06 54.3 149 26.8
Pp3c6_6560 Physcomitrium patens HOM05D021719 ORTHO05D000099 9.4e-06 54.3 126 30.2
Pp3c6_6610 Physcomitrium patens HOM05D021719 ORTHO05D000099 9.4e-06 54.3 126 30.2
TAR633G1016 Trochodendron aralioides HOM05D000180 ORTHO05D000099 9.4e-06 54.3 146 29.5
TAR633G2363 Trochodendron aralioides HOM05D000180 ORTHO05D000099 9.4e-06 54.3 146 29.5


User provided reference genes

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