Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 1.7e-247 859.0 471 100.0
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 6.7e-66 255.8 416 38.9
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 8.7e-66 255.4 337 42.7
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 4.3e-65 253.1 328 42.4
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 4.8e-64 249.6 373 40.5
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 8.1e-64 248.8 386 38.3
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 1.4e-63 248.1 338 41.4
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 3.1e-63 246.9 329 43.8
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 1.2e-62 245.0 329 43.2
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.2e-62 245.0 329 43.2
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 1.5e-62 244.6 329 42.9
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 2.0e-62 244.2 329 41.9
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 2.6e-62 243.8 338 42.0
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 3.4e-62 243.4 329 42.2
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 7.6e-62 242.3 331 41.7
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 1.0e-61 241.9 327 43.1
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.3e-61 241.5 337 42.4
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.3e-61 241.5 329 42.9
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 4.9e-61 239.6 329 42.9
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 8.4e-61 238.8 329 41.3
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 1.4e-60 238.0 375 39.5
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 2.5e-60 237.3 338 40.5
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 2.5e-60 237.3 338 41.1
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 4.2e-60 236.5 328 41.5
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 5.5e-60 236.1 355 39.7
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 9.3e-60 235.3 391 36.1
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 9.3e-60 235.3 333 41.4
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 1.2e-59 235.0 325 42.2
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 2.1e-59 234.2 332 41.3
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 2.7e-59 233.8 329 41.6
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 2.7e-59 233.8 341 38.4
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 2.7e-59 233.8 339 39.5
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 2.7e-59 233.8 341 40.5
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 3.5e-59 233.4 338 39.9
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 3.5e-59 233.4 331 40.8
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 4.6e-59 233.0 331 40.8
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 4.6e-59 233.0 337 40.1
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 7.9e-59 232.3 340 39.7
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 7.9e-59 232.3 334 41.0
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 7.9e-59 232.3 344 41.0
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 1.8e-58 231.1 329 41.3
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 2.3e-58 230.7 331 40.8
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 2.3e-58 230.7 338 39.3
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 3.0e-58 230.3 330 41.2
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.9e-58 229.9 314 43.3
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 3.9e-58 229.9 342 39.2
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 5.1e-58 229.6 359 39.0
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 6.7e-58 229.2 347 38.6
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 6.7e-58 229.2 328 39.3
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 6.7e-58 229.2 337 39.8
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 6.7e-58 229.2 329 41.3
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 8.7e-58 228.8 330 40.3
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 1.1e-57 228.4 327 40.7
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.5e-57 228.0 329 41.9
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 1.5e-57 228.0 332 38.9
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 2.5e-57 227.3 327 40.4
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 2.5e-57 227.3 324 40.1
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 3.3e-57 226.9 360 38.1
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 5.7e-57 226.1 331 39.9
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 9.6e-57 225.3 327 41.3
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 1.6e-56 224.6 331 40.2
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 1.6e-56 224.6 326 39.3
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 1.1e-55 221.9 357 37.3
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 1.4e-55 221.5 332 38.9
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 1.4e-55 221.5 332 38.9
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 2.4e-55 220.7 338 39.6
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 2.4e-55 220.7 332 38.6
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 3.1e-55 220.3 251 45.4
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 4.0e-55 219.9 334 38.9
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 5.3e-55 219.5 351 38.2
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 5.3e-55 219.5 336 39.0
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 5.3e-55 219.5 315 40.0
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 6.9e-55 219.2 332 38.6
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 6.9e-55 219.2 332 38.6
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 1.2e-54 218.4 316 40.8
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 2.0e-54 217.6 358 38.5
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 3.4e-54 216.9 333 38.7
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 8.4e-53 212.2 329 38.9
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.7e-51 207.2 411 35.8
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 7.4e-49 199.1 276 42.0
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 3.7e-48 196.8 320 38.4
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 8.2e-48 195.7 285 42.1
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 1.8e-47 194.5 422 33.6
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.1e-47 193.7 344 38.7
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 2.9e-45 187.2 409 33.5
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 6.5e-45 186.0 350 37.7
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 1.2e-43 181.8 299 36.8
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.6e-43 181.4 349 35.0
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 2.7e-43 180.6 325 36.3
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-42 178.3 280 39.6
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 3.0e-42 177.2 236 42.8
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 3.9e-42 176.8 337 36.8
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 5.7e-41 172.9 240 42.1
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 1.4e-39 168.3 241 41.1
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 2.6e-38 164.1 351 33.9
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 3.2e-36 157.1 218 42.2
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 3.6e-35 153.7 331 29.9
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-34 151.0 211 38.4
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 8.8e-34 149.1 225 38.7
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.1e-33 148.7 345 35.4
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 2.0e-33 147.9 329 33.7
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 1.1e-31 142.1 456 28.1
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 7.0e-31 139.4 213 38.0
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 3.5e-30 137.1 353 26.9
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 5.9e-30 136.3 210 39.0
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 2.9e-29 134.0 212 39.2
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 1.9e-28 131.3 180 43.9
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 4.2e-28 130.2 332 32.8
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 4.7e-27 126.7 183 42.1
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 1.1e-25 122.1 188 37.2
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 3.3e-25 120.6 341 28.4
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 2.2e-24 117.9 185 39.5
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 1.4e-23 115.2 234 34.2
Cre02.g147450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.2e-22 112.1 381 29.1
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 3.8e-21 107.1 242 33.1
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.5e-20 105.1 346 27.5
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 3.2e-20 104.0 235 34.0
Cre06.g250450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 9.4e-20 102.4 351 25.1
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 2.7e-19 100.9 129 41.1
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 1.0e-18 99.0 138 40.6
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 1.4e-18 98.6 222 34.2
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 1.8e-18 98.2 122 42.6
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 8.3e-16 89.4 161 34.8
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 2.7e-14 84.3 101 43.6
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 1.0e-13 82.4 120 38.3
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 6.5e-13 79.7 118 39.8
Ciclev10033893m.g Citrus clementina HOM05D005062 ORTHO05D006410 1.6e-11 75.1 94 43.6
COL.COLO4_24555 Corchorus olitorius HOM05D005062 ORTHO05D006410 1.6e-11 75.1 92 42.4
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 5.7e-09 66.6 72 45.8
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 1.7e-08 65.1 104 33.7
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 2.8e-08 64.3 74 40.5
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 3.7e-08 63.9 89 37.1
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 4.9e-08 63.5 76 38.2
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.4e-07 61.2 82 46.3
FAN06G3794 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.4e-07 61.2 92 35.9
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 7.0e-07 59.7 81 33.3
Hund18750 Selenicereus undatus HOM05D005062 ORTHO05D006410 1.6e-06 58.5 76 35.5
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 3.5e-06 57.4 84 40.5
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 4.5e-06 57.0 77 37.7
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 7.7e-06 56.2 124 34.7


User provided reference genes

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