Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0046s0110 Marchantia polymorpha HOM05D006197 ORTHO05D007718 3.6e-58 228.0 115 100.0
AagrBONN_evm.TU.Sc2ySwM_368.296 Anthoceros agrestis HOM05D006197 ORTHO05D007718 1.6e-18 96.3 52 82.7
Mapoly0127s0016 Marchantia polymorpha HOM05D006197 ORTHO05D007718 8.2e-18 94.0 74 63.5
Cc08_g01810 Coffea canephora HOM05D006197 ORTHO05D007718 1.0e-15 87.0 82 56.1
Cc00_g23310 Coffea canephora HOM05D006197 ORTHO05D007718 1.3e-15 86.7 82 56.1
Cc00_g31810 Coffea canephora HOM05D006197 ORTHO05D007718 1.3e-15 86.7 82 56.1
Pp3c14_9970 Physcomitrium patens HOM05D006197 ORTHO05D007718 2.2e-15 85.9 54 74.1
Aa31LG10G14080 Aethionema arabicum HOM05D006197 ORTHO05D007718 2.9e-15 85.5 84 48.8
MBI11_g07528_MAGBIO Magnolia biondii HOM05D006197 ORTHO05D007718 2.9e-15 85.5 57 64.9
Cc00_g26570 Coffea canephora HOM05D006197 ORTHO05D007718 5.0e-15 84.7 81 55.6
Sp5g03300 Schrenkiella parvula HOM05D006197 ORTHO05D007718 5.0e-15 84.7 84 48.8
PGSC0003DMG400024214 Solanum tuberosum HOM05D006197 ORTHO05D007718 5.0e-15 84.7 113 42.5
Sed0004723 Sechium edule HOM05D006197 ORTHO05D007718 6.5e-15 84.3 55 65.5
Cc00_g30230 Coffea canephora HOM05D006197 ORTHO05D007718 8.5e-15 84.0 82 54.9
Sopen05g026900 Solanum pennellii HOM05D006197 ORTHO05D007718 8.5e-15 84.0 113 41.6
Sopen08g025860 Solanum pennellii HOM05D006197 ORTHO05D007718 8.5e-15 84.0 113 41.6
CSS0031892 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 1.1e-14 83.6 99 42.4
CSS0033989 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 1.1e-14 83.6 99 42.4
CSS0037645 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 1.1e-14 83.6 99 42.4
Solyc08g077280.1 Solanum lycopersicum HOM05D006197 ORTHO05D007718 1.1e-14 83.6 113 41.6
BcaB02g07441 Brassica carinata HOM05D006197 ORTHO05D007718 2.5e-14 82.4 84 46.4
Sed0016057 Sechium edule HOM05D006197 ORTHO05D007718 2.5e-14 82.4 84 47.6
CARHR170180 Cardamine hirsuta HOM05D006197 ORTHO05D007718 3.2e-14 82.0 82 47.6
Cc08_g01990 Coffea canephora HOM05D006197 ORTHO05D007718 3.2e-14 82.0 58 60.3
Cc08_g02050 Coffea canephora HOM05D006197 ORTHO05D007718 3.2e-14 82.0 56 62.5
Ah.12g053650 Amaranthus hybridus HOM05D006197 ORTHO05D007718 4.2e-14 81.6 56 64.3
AL5G41940 Arabidopsis lyrata HOM05D006197 ORTHO05D007718 4.2e-14 81.6 84 46.4
AT3G59840 Arabidopsis thaliana HOM05D006197 ORTHO05D007718 4.2e-14 81.6 84 46.4
BcaC07g40434 Brassica carinata HOM05D006197 ORTHO05D007718 4.2e-14 81.6 85 47.1
C06p26450 Brassica napus HOM05D006197 ORTHO05D007718 4.2e-14 81.6 82 48.8
Carub.0005s2656 Capsella rubella HOM05D006197 ORTHO05D007718 4.2e-14 81.6 84 46.4
ECA240G0414 Erigeron canadensis HOM05D006197 ORTHO05D007718 4.2e-14 81.6 115 43.5
Lsat_1_v5_gn_6_66400 Lactuca sativa HOM05D006197 ORTHO05D007718 4.2e-14 81.6 55 61.8
MELO3C003373.2 Cucumis melo HOM05D006197 ORTHO05D007718 5.5e-14 81.3 55 61.8
Migut.N01790 Erythranthe guttata HOM05D006197 ORTHO05D007718 5.5e-14 81.3 115 41.7
Nitab4.5_0006693g0020 Nicotiana tabacum HOM05D006197 ORTHO05D007718 5.5e-14 81.3 113 42.5
Phvul.002G003700 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 5.5e-14 81.3 58 58.6
BcaC07g40556 Brassica carinata HOM05D006197 ORTHO05D007718 7.2e-14 80.9 85 47.1
A09p52120 Brassica napus HOM05D006197 ORTHO05D007718 7.2e-14 80.9 85 47.1
CBR_g8168 Chara braunii HOM05D006197 ORTHO05D007718 7.2e-14 80.9 105 49.5
Duzib205G0278 Durio zibethinus HOM05D006197 ORTHO05D007718 7.2e-14 80.9 57 61.4
Gohir.A04G000300 Gossypium hirsutum HOM05D006197 ORTHO05D007718 7.2e-14 80.9 57 59.6
Gohir.A08G159600 Gossypium hirsutum HOM05D006197 ORTHO05D007718 7.2e-14 80.9 57 59.6
Gohir.D08G180000 Gossypium hirsutum HOM05D006197 ORTHO05D007718 7.2e-14 80.9 57 59.6
Gorai.004G188500 Gossypium raimondii HOM05D006197 ORTHO05D007718 7.2e-14 80.9 57 59.6
HanXRQChr08g0234831 Helianthus annuus HOM05D006197 ORTHO05D007718 7.2e-14 80.9 50 68.0
Thecc.03G234100 Theobroma cacao HOM05D006197 ORTHO05D007718 7.2e-14 80.9 57 61.4
BcaC08g45013 Brassica carinata HOM05D006197 ORTHO05D007718 9.4e-14 80.5 82 47.6
BolC6t37808H Brassica oleracea HOM05D006197 ORTHO05D007718 9.4e-14 80.5 82 47.6
Thhalv10006335m.g Eutrema salsugineum HOM05D006197 ORTHO05D007718 9.4e-14 80.5 84 45.2
Potri.001G146700 Populus trichocarpa HOM05D006197 ORTHO05D007718 9.4e-14 80.5 84 46.4
PGR042G3581 Punica granatum HOM05D006197 ORTHO05D007718 9.4e-14 80.5 50 68.0
BolC8t51081H Brassica oleracea HOM05D000403 ORTHO05D004426 1.2e-13 80.1 82 47.6
AUR62007231 Chenopodium quinoa HOM05D006197 ORTHO05D007718 1.2e-13 80.1 98 43.9
AUR62018769 Chenopodium quinoa HOM05D006197 ORTHO05D007718 1.2e-13 80.1 98 43.9
Dinv25183 Davidia involucrata HOM05D002285 ORTHO05D009255 1.2e-13 80.1 55 58.2
Nitab4.5_0002055g0120 Nicotiana tabacum HOM05D006197 ORTHO05D007718 1.2e-13 80.1 86 51.2
Oeu014592.2 Olea europaea HOM05D006197 ORTHO05D007718 1.2e-13 80.1 111 43.2
GSVIVG01013230001 Vitis vinifera HOM05D006197 ORTHO05D007718 1.2e-13 80.1 59 61.0
A07p24860 Brassica napus HOM05D006197 ORTHO05D007718 1.6e-13 79.7 77 49.4
BraA07t30130Z Brassica rapa HOM05D006197 ORTHO05D007718 1.6e-13 79.7 77 49.4
Cpa.g.sc6.409 Carica papaya HOM05D006197 ORTHO05D007718 1.6e-13 79.7 57 57.9
COL.COLO4_17110 Corchorus olitorius HOM05D006197 ORTHO05D007718 1.6e-13 79.7 57 57.9
CANSAT64G2368 Cannabis sativa HOM05D006197 ORTHO05D007718 2.1e-13 79.3 57 57.9
Duzib068G0126 Durio zibethinus HOM05D006197 ORTHO05D007718 2.1e-13 79.3 57 59.6
Glyma.01G201200 Glycine max HOM05D006197 ORTHO05D007718 2.1e-13 79.3 81 48.1
Phvul.002G004500 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 2.1e-13 79.3 75 50.7
SalBow1G7863 Salvia bowleyana HOM05D006197 ORTHO05D007718 2.1e-13 79.3 115 40.0
CsaV3_3G049530 Cucumis sativus L. HOM05D006197 ORTHO05D007718 2.7e-13 79.0 53 60.4
Dinv28915 Davidia involucrata HOM05D006197 ORTHO05D007718 2.7e-13 79.0 115 40.9
MD16G1269400 Malus domestica HOM05D006197 ORTHO05D007718 2.7e-13 79.0 59 59.3
Atru.chr6.1773 Acer truncatum HOM05D006197 ORTHO05D007718 3.6e-13 78.6 55 60.0
Nn1g03717 Nelumbo nucifera HOM05D006197 ORTHO05D007718 3.6e-13 78.6 53 64.2
THA.LOC104819961 Tarenaya hassleriana HOM05D006197 ORTHO05D007718 3.6e-13 78.6 101 43.6
arahy.Tifrunner.gnm1.ann1.M9L3KI Arachis hypogaea HOM05D006197 ORTHO05D007718 4.6e-13 78.2 102 43.1
arahy.Tifrunner.gnm1.ann1.PC0NS4 Arachis hypogaea HOM05D006197 ORTHO05D007718 4.6e-13 78.2 102 43.1
FAN04G1051 Fragaria x ananassa HOM05D006197 ORTHO05D007718 4.6e-13 78.2 55 60.0
FAN08G0099 Fragaria x ananassa HOM05D006197 ORTHO05D007718 4.6e-13 78.2 55 60.0
FAN18G0540 Fragaria x ananassa HOM05D006197 ORTHO05D007718 4.6e-13 78.2 55 60.0
CiPaw.11G087500 Carya illinoinensis HOM05D006197 ORTHO05D007718 6.1e-13 77.8 89 47.2
Cc08_g01910 Coffea canephora HOM05D006197 ORTHO05D007718 6.1e-13 77.8 62 56.5
DCAR_008300 Daucus carota HOM05D006197 ORTHO05D007718 6.1e-13 77.8 70 57.1
Eucgr.E00313 Eucalyptus grandis HOM05D006197 ORTHO05D007718 6.1e-13 77.8 89 41.6
Hma1.2p1_0311F.1_g121310 Hydrangea macrophylla HOM05D006197 ORTHO05D007718 6.1e-13 77.8 55 58.2
RcHm_v2.0_Chr7g0208331 Rosa chinensis HOM05D006197 ORTHO05D007718 6.1e-13 77.8 57 57.9
TPR.G6747 Trifolium pratense HOM05D006197 ORTHO05D007718 6.1e-13 77.8 55 61.8
VMungo1215G3393 Vigna mungo HOM05D006197 ORTHO05D007718 6.1e-13 77.8 94 44.7
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 7.9e-13 77.4 94 42.6
Ciclev10033154m.g Citrus clementina HOM05D006197 ORTHO05D007718 7.9e-13 77.4 55 58.2
Glyma.11G041000 Glycine max HOM05D006197 ORTHO05D007718 7.9e-13 77.4 91 42.9
Gorai.008G229000 Gossypium raimondii HOM05D006197 ORTHO05D007718 7.9e-13 77.4 57 57.9
Lj2g0021118 Lotus japonicus HOM05D006197 ORTHO05D007718 7.9e-13 77.4 79 46.8
PSO210G4997 Papaver somniferum HOM05D006197 ORTHO05D007718 7.9e-13 77.4 82 46.3
EL10Ac5g12195 Beta vulgaris HOM05D006197 ORTHO05D007718 1.0e-12 77.0 85 49.4
Aqoxy1G03814 Aquilegia oxysepala HOM05D006197 ORTHO05D007718 1.4e-12 76.6 97 43.3
Sabra01G0115400 Salix brachista HOM05D006197 ORTHO05D007718 1.4e-12 76.6 84 45.2
unitig_747.g21291 Utricularia gibba HOM05D006197 ORTHO05D007718 1.4e-12 76.6 90 46.7
Lalb_Chr09g0323941 Lupinus albus HOM05D006197 ORTHO05D007718 1.8e-12 76.3 59 57.6
Medtr5g013975 Medicago truncatula HOM05D006197 ORTHO05D007718 1.8e-12 76.3 100 41.0
PSO832G1675 Papaver somniferum HOM05D006197 ORTHO05D007718 1.8e-12 76.3 90 44.4
TAR624G0346 Trochodendron aralioides HOM05D006197 ORTHO05D007718 1.8e-12 76.3 54 63.0
ATR1088G052 Amborella trichopoda HOM05D006197 ORTHO05D007718 2.3e-12 75.9 50 64.0
MBI02_g29718_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009071 2.3e-12 75.9 94 44.7
Manes.15G173000 Manihot esculenta HOM05D006197 ORTHO05D007718 2.3e-12 75.9 89 44.9
SMO119G0374 Selaginella moellendorffii HOM05D006197 ORTHO05D007718 2.3e-12 75.9 78 55.1
Cfa012386 Carpinus fangiana HOM05D006197 ORTHO05D007718 3.0e-12 75.5 88 45.5
Oeu006551.1 Olea europaea HOM05D006197 ORTHO05D007718 3.0e-12 75.5 116 41.4
Os05g0500450 Oryza sativa ssp. japonica HOM05D006197 ORTHO05D007718 3.0e-12 75.5 54 61.1
Sc01g0007760 Simmondsia chinensis HOM05D006197 ORTHO05D007718 3.0e-12 75.5 54 63.0
VMungo1215G1228 Vigna mungo HOM05D006197 ORTHO05D007718 3.0e-12 75.5 98 40.8
Peaxi162Scf00084g00099 Petunia axillaris HOM05D006197 ORTHO05D007718 3.9e-12 75.1 53 60.4
Prupe.5G046200 Prunus persica HOM05D006197 ORTHO05D007718 3.9e-12 75.1 85 47.1
Ca_24632_v3 Cicer arietinum L. HOM05D006197 ORTHO05D007718 5.1e-12 74.7 86 43.0
Haze_08298 Corylus avellana HOM05D006197 ORTHO05D007718 5.1e-12 74.7 90 44.4
Rhsim11G0011100 Rhododendron simsii HOM05D006197 ORTHO05D007718 5.1e-12 74.7 55 54.5
FAN13G1034 Fragaria x ananassa HOM05D006197 ORTHO05D007718 8.8e-12 73.9 52 59.6
QL12p007107 Quercus lobata HOM05D006197 ORTHO05D007718 1.1e-11 73.6 81 45.7
Gohir.D12G213400 Gossypium hirsutum HOM05D006197 ORTHO05D007718 1.5e-11 73.2 57 56.1
Psat2g174760 Pisum sativum HOM05D006197 ORTHO05D007718 3.3e-11 72.0 99 40.4
TWI81G0993 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 4.3e-11 71.6 82 43.9
Duzib084G1370 Durio zibethinus HOM05D006197 ORTHO05D007718 4.8e-10 68.2 58 55.2
TWI15G0656 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 1.8e-09 66.2 57 56.1
Eucgr.C01972 Eucalyptus grandis HOM05D006197 ORTHO05D007718 1.3e-07 60.1 71 45.1
CAN.G799.18 Capsicum annuum HOM05D006197 ORTHO05D007718 1.7e-07 59.7 45 57.8
Cc08_g01940 Coffea canephora HOM05D000011 ORTHO05D000157 8.5e-07 57.4 32 68.8


User provided reference genes

Program Settings