Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 3.5e-55 218.0 108 100.0
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 2.2e-17 92.4 107 44.9
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 2.9e-17 92.0 111 44.1
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 2.9e-17 92.0 95 54.7
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 1.4e-16 89.7 95 49.5
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 1.9e-16 89.4 93 54.8
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 2.5e-16 89.0 83 54.2
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 9.4e-16 87.0 87 51.7
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 1.2e-15 86.7 104 50.0
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 1.4e-14 83.2 112 42.9
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 1.8e-14 82.8 99 47.5
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 5.2e-14 81.3 99 46.5
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 5.2e-14 81.3 88 51.1
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 5.2e-14 81.3 85 51.8
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 6.7e-14 80.9 112 42.9
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 8.8e-14 80.5 92 48.9
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 1.5e-13 79.7 93 49.5
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 2.0e-13 79.3 104 44.2
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 3.3e-13 78.6 85 51.8
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 3.3e-13 78.6 99 45.5
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 5.7e-13 77.8 99 43.4
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 5.7e-13 77.8 85 51.8
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 5.7e-13 77.8 85 51.8
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 7.4e-13 77.4 99 43.4
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 7.4e-13 77.4 99 44.4
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 9.7e-13 77.0 96 49.0
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 1.3e-12 76.6 85 49.4
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 1.3e-12 76.6 84 50.0
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 1.3e-12 76.6 84 50.0
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 1.7e-12 76.3 102 48.0
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 1.7e-12 76.3 102 48.0
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 1.7e-12 76.3 99 43.4
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 2.2e-12 75.9 102 46.1
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 2.2e-12 75.9 109 44.0
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 2.2e-12 75.9 104 47.1
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 2.8e-12 75.5 101 45.5
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 2.8e-12 75.5 83 51.8
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 2.8e-12 75.5 96 49.0
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 3.7e-12 75.1 96 46.9
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 3.7e-12 75.1 86 53.5
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 3.7e-12 75.1 82 51.2
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 6.3e-12 74.3 101 44.6
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 8.2e-12 73.9 84 51.2
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 8.2e-12 73.9 108 40.7
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 1.1e-11 73.6 96 49.0
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 1.1e-11 73.6 82 47.6
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 1.1e-11 73.6 82 47.6
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 1.1e-11 73.6 83 51.8
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 1.8e-11 72.8 110 41.8
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 2.4e-11 72.4 89 48.3
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 2.4e-11 72.4 88 45.5
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 3.1e-11 72.0 104 44.2
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 3.1e-11 72.0 79 51.9
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 4.1e-11 71.6 104 47.1
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 4.1e-11 71.6 82 47.6
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 4.1e-11 71.6 84 50.0
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 4.1e-11 71.6 94 44.7
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 4.1e-11 71.6 98 44.9
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 7.0e-11 70.9 84 50.0
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 7.0e-11 70.9 87 46.0
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 9.1e-11 70.5 88 45.5
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 9.1e-11 70.5 84 50.0
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 9.1e-11 70.5 84 48.8
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 9.1e-11 70.5 82 48.8
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 1.2e-10 70.1 82 47.6
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.2e-10 70.1 84 48.8
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 2.0e-10 69.3 91 42.9
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 3.5e-10 68.6 91 45.1
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 3.5e-10 68.6 84 46.4
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 4.5e-10 68.2 99 44.4
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 7.7e-10 67.4 84 46.4
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 7.7e-10 67.4 81 42.0
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 1.0e-09 67.0 82 46.3
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 2.2e-09 65.9 83 47.0
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 2.9e-09 65.5 79 45.6
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 2.9e-09 65.5 87 43.7
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 5.0e-09 64.7 83 41.0
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 5.0e-09 64.7 80 45.0
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 1.1e-08 63.5 82 45.1
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 1.1e-08 63.5 86 44.2
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 1.5e-08 63.2 83 43.4
Cre16.g667150 Chlamydomonas reinhardtii HOM05D007920 ORTHO05D009993 1.0e-06 57.0 91 40.7
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 2.3e-06 55.8 63 44.4
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 4.0e-06 55.1 90 40.0
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 8.8e-06 53.9 80 41.2


User provided reference genes

Program Settings