Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 5.7e-286 986.9 489 100.0
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 8.3e-144 514.6 419 58.9
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 4.4e-137 492.3 406 56.4
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 1.7e-136 490.3 381 60.1
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.7e-136 490.3 381 60.1
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.8e-136 489.6 379 60.4
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 3.7e-136 489.2 381 59.8
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 4.9e-136 488.8 381 59.8
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 8.3e-136 488.0 410 60.5
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 1.4e-135 487.3 373 59.8
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 2.7e-134 483.0 410 56.3
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 5.9e-134 481.9 397 57.9
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 1.3e-133 480.7 442 53.2
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 1.7e-133 480.3 364 60.4
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 5.6e-132 475.3 407 55.5
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 7.3e-132 474.9 453 53.4
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 7.3e-132 474.9 382 58.1
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 1.2e-131 474.2 407 55.5
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 2.1e-131 473.4 447 53.5
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 2.8e-131 473.0 377 59.7
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 1.0e-130 471.1 442 51.4
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 1.0e-130 471.1 408 55.9
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 1.8e-130 470.3 385 57.1
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 1.8e-130 470.3 364 59.1
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 2.3e-130 469.9 392 55.9
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 4.0e-130 469.2 366 59.0
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 8.9e-130 468.0 369 58.3
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 8.9e-130 468.0 453 51.9
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 2.6e-129 466.5 406 53.2
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 3.4e-129 466.1 416 52.2
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 3.4e-129 466.1 455 50.1
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 3.4e-129 466.1 443 50.6
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 4.4e-129 465.7 356 64.3
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 5.7e-129 465.3 457 51.0
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 5.7e-129 465.3 434 52.1
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 7.5e-129 464.9 406 55.7
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 9.8e-129 464.5 406 52.2
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 1.3e-128 464.2 412 53.6
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 2.9e-128 463.0 425 51.8
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.9e-128 463.0 382 57.3
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 2.9e-128 463.0 450 50.2
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 4.9e-128 462.2 389 54.0
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 4.9e-128 462.2 389 54.0
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 6.4e-128 461.8 366 58.7
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 6.4e-128 461.8 382 57.6
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 6.4e-128 461.8 356 58.7
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 1.4e-127 460.7 408 52.0
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 1.4e-127 460.7 409 52.1
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 1.4e-127 460.7 409 52.1
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 1.4e-127 460.7 364 55.8
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 1.4e-127 460.7 364 57.4
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 1.8e-127 460.3 449 50.1
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 3.2e-127 459.5 382 55.5
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 4.1e-127 459.1 382 56.0
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 5.4e-127 458.8 463 48.4
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 7.0e-127 458.4 373 57.9
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 7.0e-127 458.4 379 56.2
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 9.2e-127 458.0 354 58.5
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 9.2e-127 458.0 372 57.5
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 1.2e-126 457.6 364 57.4
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 1.6e-126 457.2 389 53.5
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.6e-126 457.2 438 53.4
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 1.6e-126 457.2 379 55.4
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 2.7e-126 456.4 389 53.7
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 3.5e-126 456.1 384 53.6
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 3.5e-126 456.1 364 58.5
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 3.5e-126 456.1 374 57.5
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 4.6e-126 455.7 367 57.2
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 4.6e-126 455.7 374 57.5
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 5.9e-126 455.3 384 53.6
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 5.9e-126 455.3 364 56.6
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 7.8e-126 454.9 378 56.3
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 1.0e-125 454.5 384 53.6
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 1.0e-125 454.5 384 53.6
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 1.0e-125 454.5 364 58.5
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 2.3e-125 453.4 453 49.0
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 3.9e-125 452.6 353 59.2
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 5.0e-125 452.2 364 57.1
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 6.6e-125 451.8 382 54.5
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 8.6e-125 451.4 406 53.7
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 1.9e-124 450.3 387 55.0
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 1.9e-124 450.3 382 54.7
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 1.9e-124 450.3 355 56.9
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 3.3e-124 449.5 363 57.3
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 4.3e-124 449.1 368 55.2
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 9.5e-124 448.0 364 57.1
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 2.1e-123 446.8 331 60.7
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 2.1e-123 446.8 369 57.2
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 3.6e-123 446.0 364 56.9
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 1.0e-122 444.5 455 49.2
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 2.3e-122 443.4 361 56.5
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 3.1e-122 443.0 380 54.2
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 4.0e-122 442.6 436 51.4
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 5.2e-122 442.2 463 49.7
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 5.2e-122 442.2 355 56.3
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 9.8e-121 438.0 387 53.2
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 1.3e-120 437.6 353 56.7
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 2.2e-120 436.8 359 54.9
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 4.9e-120 435.6 478 48.5
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 4.9e-120 435.6 354 55.9
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 4.9e-120 435.6 429 50.6
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 9.2e-119 431.4 361 55.4
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 1.2e-118 431.0 444 51.8
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 1.0e-117 427.9 382 53.1
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 1.5e-116 424.1 327 58.7
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.6e-115 420.6 331 58.0
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 3.6e-115 419.5 364 55.5
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 8.1e-115 418.3 408 50.2
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 2.0e-113 413.7 344 56.4
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 2.0e-113 413.7 344 56.4
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 2.6e-113 413.3 389 51.2
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 1.3e-112 411.0 335 56.4
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 2.4e-111 406.8 494 42.1
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 7.8e-110 401.7 362 54.1
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 1.3e-109 401.0 300 59.7
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 1.7e-109 400.6 375 51.5
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 2.1e-107 393.7 385 50.1
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 1.8e-106 390.6 351 53.8
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 1.8e-106 390.6 364 51.9
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 5.8e-105 385.6 338 55.9
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 3.7e-104 382.9 379 48.8
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 1.9e-103 380.6 389 49.6
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.7e-102 376.7 341 54.0
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 3.5e-102 376.3 341 54.0
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 9.6e-100 368.2 380 47.4
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 2.4e-98 363.6 295 58.3
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 2.4e-95 353.6 353 49.6
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 6.0e-94 349.0 246 63.8
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 4.3e-92 342.8 379 45.6
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 9.0e-90 335.1 250 61.2
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 5.8e-89 332.4 220 65.5
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 3.0e-85 320.1 277 55.6
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 1.3e-83 314.7 252 58.3
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 1.6e-83 314.3 342 45.0
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 8.1e-75 285.4 206 62.1
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 1.3e-67 261.5 344 42.7
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 8.2e-59 232.3 281 42.7
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 3.3e-52 210.3 177 55.9
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 2.6e-41 174.1 176 49.4
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 4.1e-34 150.2 93 69.9
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 2.5e-31 141.0 86 70.9
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 3.6e-22 110.5 73 68.5
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 1.0e-21 109.0 106 51.9
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 1.2e-17 95.5 108 45.4
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 5.2e-13 80.1 93 39.8
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 2.0e-12 78.2 54 63.0
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.6e-12 77.8 57 56.1
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.6e-12 77.8 57 56.1
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.6e-12 77.8 57 56.1
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 7.5e-12 76.3 57 54.4
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 2.2e-11 74.7 95 38.9
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 3.7e-11 73.9 54 55.6
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.1e-10 72.4 61 49.2


User provided reference genes

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