Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 2.8e-152 542.0 284 100.0
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 8.9e-66 254.6 283 54.4
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 2.7e-54 216.5 286 47.9
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 1.4e-50 204.1 292 46.6
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 4.5e-49 199.1 258 47.7
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.3e-48 197.6 286 43.4
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 6.4e-48 195.3 286 42.7
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 8.4e-48 194.9 286 42.7
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 1.4e-47 194.1 285 43.5
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 3.2e-47 193.0 286 42.7
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 9.3e-47 191.4 291 41.9
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.2e-46 191.0 286 43.7
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.2e-46 191.0 261 46.0
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 1.6e-46 190.7 288 42.4
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.1e-46 190.3 288 43.1
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.1e-46 190.3 288 44.1
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 2.7e-46 189.9 288 42.4
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 2.7e-46 189.9 286 43.7
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 3.5e-46 189.5 286 41.6
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 3.5e-46 189.5 286 43.4
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 4.6e-46 189.1 289 43.9
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 4.6e-46 189.1 288 42.0
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 4.6e-46 189.1 288 44.1
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.0e-45 188.0 287 43.2
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 1.3e-45 187.6 287 43.6
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 1.8e-45 187.2 288 44.4
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 1.8e-45 187.2 292 43.5
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 2.3e-45 186.8 289 41.9
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 2.3e-45 186.8 286 42.0
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 3.0e-45 186.4 288 41.7
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 3.0e-45 186.4 270 43.0
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 3.9e-45 186.0 267 44.9
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 5.1e-45 185.7 287 42.5
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 5.1e-45 185.7 290 42.4
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 5.1e-45 185.7 283 42.0
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 6.7e-45 185.3 289 40.8
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 6.7e-45 185.3 288 41.7
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 6.7e-45 185.3 284 43.0
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 8.7e-45 184.9 288 41.7
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 8.7e-45 184.9 286 42.0
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 8.7e-45 184.9 286 42.7
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 8.7e-45 184.9 290 42.4
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 8.7e-45 184.9 286 42.3
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 8.7e-45 184.9 289 41.5
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 1.1e-44 184.5 304 41.8
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 1.1e-44 184.5 272 46.0
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 1.5e-44 184.1 287 43.2
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.9e-44 183.7 283 41.3
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 1.9e-44 183.7 284 41.9
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 1.9e-44 183.7 268 43.3
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 2.5e-44 183.3 288 41.0
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 2.5e-44 183.3 288 41.3
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 2.5e-44 183.3 285 43.5
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.5e-44 183.3 291 42.6
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 3.3e-44 183.0 260 43.8
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 3.3e-44 183.0 288 41.0
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 3.3e-44 183.0 289 42.6
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 3.3e-44 183.0 286 42.0
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 4.3e-44 182.6 288 41.3
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 7.4e-44 181.8 288 41.3
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 7.4e-44 181.8 288 42.4
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 7.4e-44 181.8 289 41.5
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 9.6e-44 181.4 260 43.1
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 9.6e-44 181.4 269 43.1
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 1.3e-43 181.0 289 41.5
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.3e-43 181.0 260 43.1
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.6e-43 180.6 286 40.2
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.6e-43 180.6 290 42.4
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 1.6e-43 180.6 256 41.4
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.1e-43 180.3 281 40.9
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 2.1e-43 180.3 289 41.5
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 2.8e-43 179.9 260 42.3
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 2.8e-43 179.9 288 41.0
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 3.7e-43 179.5 289 43.9
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 3.7e-43 179.5 290 40.7
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 3.7e-43 179.5 290 43.1
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 3.7e-43 179.5 291 41.9
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 4.8e-43 179.1 260 42.7
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 4.8e-43 179.1 286 41.3
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 6.2e-43 178.7 291 41.6
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 6.2e-43 178.7 261 44.1
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 6.2e-43 178.7 287 40.4
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 8.1e-43 178.3 288 40.3
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 8.1e-43 178.3 286 40.6
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 1.1e-42 177.9 259 41.7
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 1.1e-42 177.9 259 45.9
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 1.1e-42 177.9 288 41.0
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.1e-42 177.9 286 41.6
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 1.1e-42 177.9 286 42.3
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 1.4e-42 177.6 270 41.5
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 1.4e-42 177.6 290 42.1
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.4e-42 177.6 259 40.9
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.4e-42 177.6 266 42.9
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.8e-42 177.2 266 42.1
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 1.8e-42 177.2 288 41.3
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 2.4e-42 176.8 259 41.3
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 2.4e-42 176.8 286 40.6
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 3.1e-42 176.4 286 40.9
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 4.0e-42 176.0 288 41.3
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 4.0e-42 176.0 272 41.5
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 5.3e-42 175.6 289 41.2
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 5.3e-42 175.6 287 40.8
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 5.3e-42 175.6 288 41.3
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 6.9e-42 175.3 286 41.3
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 6.9e-42 175.3 285 42.8
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 9.0e-42 174.9 284 40.5
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 9.0e-42 174.9 264 42.4
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 1.5e-41 174.1 286 39.9
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.5e-41 174.1 291 40.2
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 2.6e-41 173.3 259 40.9
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 2.6e-41 173.3 286 40.2
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 2.6e-41 173.3 286 40.2
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 2.6e-41 173.3 286 40.2
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 5.8e-41 172.2 288 42.4
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 2.9e-40 169.9 287 42.9
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.8e-40 169.5 248 44.8
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 4.9e-40 169.1 291 39.2
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 4.9e-40 169.1 294 41.5
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.4e-40 168.3 287 41.8
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 1.4e-39 167.5 286 39.5
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 2.5e-39 166.8 287 41.1
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.2e-39 166.4 287 41.5
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.2e-39 166.0 287 41.5
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.2e-39 166.0 287 41.5
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.2e-39 166.0 287 41.5
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 7.1e-39 165.2 257 41.6
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 9.3e-39 164.9 287 41.1
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.2e-38 164.5 261 42.1
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 1.2e-38 164.5 141 58.2
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 1.6e-38 164.1 247 40.9
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 2.1e-38 163.7 286 39.9
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 2.7e-38 163.3 257 39.3
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 2.7e-38 163.3 294 39.8
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 3.5e-38 162.9 149 54.4
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 6.0e-38 162.2 229 44.1
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 1.3e-37 161.0 288 38.5
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 6.7e-37 158.7 237 41.4
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 6.7e-37 158.7 149 55.7
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 2.5e-36 156.8 259 38.6
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 4.3e-36 156.0 259 41.7
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 4.8e-35 152.5 97 71.1
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 4.1e-34 149.4 272 37.5
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 3.4e-33 146.4 350 33.4
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 1.0e-32 144.8 127 58.3
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 2.2e-32 143.7 265 35.1
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.8e-32 142.9 150 48.0
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 5.0e-32 142.5 263 36.5
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.4e-31 141.0 91 69.2
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.9e-31 140.6 146 47.9
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.5e-31 140.2 150 47.3
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 9.3e-31 138.3 99 64.6
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 1.8e-29 134.0 334 34.7
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 8.7e-29 131.7 121 57.0
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 3.3e-28 129.8 266 34.2
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 4.1e-26 122.9 130 44.6
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.0e-24 118.2 114 50.9
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 1.1e-18 98.2 97 44.3
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.6e-14 84.3 81 54.3
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 1.4e-13 81.3 156 42.3
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 2.5e-07 60.5 74 47.3


User provided reference genes

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