Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 2.7e-288 994.6 482 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 3.8e-117 426.0 323 62.8
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 2.2e-112 410.2 407 51.4
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 1.0e-106 391.3 320 57.5
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 2.3e-106 390.2 304 58.6
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 1.1e-105 387.9 327 56.3
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 1.5e-105 387.5 314 58.0
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 2.0e-105 387.1 353 54.4
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 2.6e-105 386.7 332 56.0
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 2.6e-105 386.7 319 57.1
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 2.6e-105 386.7 327 54.4
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 5.7e-105 385.6 353 52.7
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 7.4e-105 385.2 328 54.0
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 9.7e-105 384.8 329 55.0
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 1.3e-104 384.4 307 57.7
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 1.3e-104 384.4 339 54.3
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 1.7e-104 384.0 314 56.7
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 2.2e-104 383.6 313 57.2
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 2.8e-104 383.3 304 58.9
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 3.7e-104 382.9 335 54.6
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 4.8e-104 382.5 314 57.3
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 4.8e-104 382.5 321 56.1
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 8.2e-104 381.7 307 57.3
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 8.2e-104 381.7 308 57.5
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 1.4e-103 380.9 304 58.2
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 1.8e-103 380.6 308 58.4
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 2.4e-103 380.2 308 57.1
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 2.4e-103 380.2 332 53.9
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 2.4e-103 380.2 304 58.6
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 2.4e-103 380.2 353 52.1
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 3.1e-103 379.8 335 54.6
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 4.1e-103 379.4 304 58.2
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 5.3e-103 379.0 308 56.8
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 7.0e-103 378.6 335 54.0
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 7.0e-103 378.6 381 50.1
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 9.1e-103 378.3 367 51.8
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 9.1e-103 378.3 325 55.4
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 9.1e-103 378.3 325 55.4
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 1.6e-102 377.5 318 55.3
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.6e-102 377.5 304 57.6
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 2.0e-102 377.1 324 54.3
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 2.0e-102 377.1 324 54.3
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 2.0e-102 377.1 304 55.9
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 2.6e-102 376.7 311 56.3
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 2.6e-102 376.7 327 54.7
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 3.5e-102 376.3 306 59.2
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 3.5e-102 376.3 304 57.9
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 4.5e-102 375.9 303 57.8
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 1.0e-101 374.8 310 55.8
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 1.0e-101 374.8 312 55.4
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.0e-101 374.8 380 50.8
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 1.3e-101 374.4 329 53.2
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 1.3e-101 374.4 315 56.2
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 1.3e-101 374.4 317 54.3
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 1.7e-101 374.0 310 55.5
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 1.7e-101 374.0 308 56.2
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 2.2e-101 373.6 304 56.9
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 2.9e-101 373.2 303 57.1
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 2.9e-101 373.2 314 55.4
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 3.8e-101 372.9 324 54.0
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 3.8e-101 372.9 303 57.1
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 5.0e-101 372.5 303 56.8
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 6.5e-101 372.1 317 54.6
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 6.5e-101 372.1 305 56.7
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 6.5e-101 372.1 303 56.8
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 1.1e-100 371.3 312 54.8
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 1.5e-100 370.9 304 57.9
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 1.5e-100 370.9 304 56.6
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.9e-100 370.5 304 56.6
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 3.2e-100 369.8 294 58.2
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 4.2e-100 369.4 308 54.9
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 5.5e-100 369.0 303 56.4
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 5.5e-100 369.0 317 54.3
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 7.2e-100 368.6 324 54.3
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 7.2e-100 368.6 309 56.0
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 7.2e-100 368.6 304 56.2
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 7.2e-100 368.6 314 54.5
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 9.4e-100 368.2 309 56.0
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.6e-99 367.5 349 52.1
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 3.6e-99 366.3 304 56.9
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 3.6e-99 366.3 307 55.0
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 4.7e-99 365.9 304 55.6
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 6.1e-99 365.5 321 53.9
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 6.1e-99 365.5 342 52.9
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 8.0e-99 365.2 293 57.7
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 8.0e-99 365.2 304 55.6
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 1.0e-98 364.8 304 55.9
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 1.4e-98 364.4 337 52.2
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 1.8e-98 364.0 337 52.2
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 2.3e-98 363.6 308 54.9
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 3.0e-98 363.2 307 55.4
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 4.0e-98 362.8 331 52.9
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 1.5e-97 360.9 297 56.6
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 5.7e-97 359.0 311 54.7
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 5.7e-97 359.0 303 55.4
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 5.7e-97 359.0 303 55.4
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 5.7e-97 359.0 312 54.5
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 9.7e-97 358.2 301 55.5
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 9.7e-97 358.2 321 52.6
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 1.7e-96 357.5 309 55.0
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 2.4e-95 353.6 317 53.9
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 2.4e-95 353.6 277 61.7
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 2.7e-94 350.1 314 53.5
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 1.3e-93 347.8 359 49.3
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 1.7e-93 347.4 327 51.7
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 1.7e-93 347.4 284 57.7
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 6.5e-93 345.5 299 55.2
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.9e-92 344.0 330 51.8
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 2.5e-92 343.6 308 53.9
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 2.5e-92 343.6 324 50.6
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 1.0e-90 338.2 303 52.5
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 8.3e-88 328.6 304 52.0
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 2.4e-87 327.0 452 41.4
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 3.1e-87 326.6 362 47.8
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 2.7e-86 323.6 253 58.1
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 2.3e-85 320.5 323 48.6
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 1.6e-78 297.7 323 47.4
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 3.5e-78 296.6 210 63.8
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 5.9e-78 295.8 248 55.6
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 2.1e-75 287.3 244 57.0
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 4.4e-73 279.6 211 61.1
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 1.7e-72 277.7 241 54.4
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 6.0e-70 269.2 195 63.6
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 7.3e-68 262.3 197 63.5
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 1.0e-53 215.3 205 51.2
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 3.5e-38 163.7 151 53.6
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 9.6e-36 155.6 123 57.7
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 1.4e-34 151.8 152 48.0
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 3.4e-33 147.1 391 29.4
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 2.7e-30 137.5 141 48.2
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 3.5e-30 137.1 111 54.1
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.1e-29 133.3 122 50.0
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 1.1e-26 125.6 284 30.6
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 1.1e-26 125.6 105 56.2
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 2.4e-26 124.4 103 52.4
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 4.5e-25 120.2 129 48.8
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 1.9e-23 114.8 75 69.3
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 6.2e-19 99.8 131 43.5
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 6.7e-13 79.7 56 60.7
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 1.6e-11 75.1 49 63.3
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 1.2e-09 68.9 58 55.2
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 7.9e-06 56.2 42 52.4
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 7.9e-06 56.2 42 52.4


User provided reference genes

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