Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 8.9e-69 263.5 131 100.0
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 9.9e-44 180.3 131 64.1
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 9.9e-44 180.3 134 66.4
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 4.9e-43 177.9 117 70.9
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 6.4e-43 177.6 131 64.1
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 1.4e-42 176.4 131 64.1
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 3.2e-42 175.3 110 70.0
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 4.2e-42 174.9 131 62.6
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 4.2e-42 174.9 131 61.1
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 4.2e-42 174.9 115 67.8
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 5.4e-42 174.5 118 68.6
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 7.1e-42 174.1 131 60.3
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 9.3e-42 173.7 131 62.6
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 9.3e-42 173.7 115 67.8
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 1.2e-41 173.3 123 64.2
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 1.6e-41 172.9 131 59.5
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 1.6e-41 172.9 131 59.5
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 1.6e-41 172.9 131 59.5
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 1.6e-41 172.9 118 66.9
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.1e-41 172.6 117 65.8
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 2.1e-41 172.6 114 66.7
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 2.7e-41 172.2 132 62.9
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 2.7e-41 172.2 117 67.5
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 4.6e-41 171.4 131 61.8
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 4.6e-41 171.4 118 66.1
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 4.6e-41 171.4 120 65.0
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 4.6e-41 171.4 117 66.7
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.6e-41 171.4 131 62.6
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 6.0e-41 171.0 117 65.8
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 6.0e-41 171.0 117 66.7
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 6.0e-41 171.0 117 66.7
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 7.8e-41 170.6 117 65.0
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 7.8e-41 170.6 131 62.6
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 7.8e-41 170.6 131 61.8
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 7.8e-41 170.6 117 63.2
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 1.0e-40 170.2 131 60.3
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.0e-40 170.2 131 61.8
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.0e-40 170.2 125 64.0
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.0e-40 170.2 131 61.8
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 1.0e-40 170.2 118 64.4
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 1.0e-40 170.2 117 65.0
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.3e-40 169.9 131 59.5
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 1.3e-40 169.9 116 65.5
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 1.7e-40 169.5 126 62.7
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 1.7e-40 169.5 133 60.2
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 1.7e-40 169.5 117 61.5
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 2.3e-40 169.1 112 67.0
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 2.3e-40 169.1 126 62.7
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.3e-40 169.1 126 63.5
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 2.3e-40 169.1 132 59.8
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 2.3e-40 169.1 117 64.1
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 3.0e-40 168.7 132 64.4
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 3.0e-40 168.7 132 64.4
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 3.9e-40 168.3 134 61.9
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 3.9e-40 168.3 131 60.3
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 3.9e-40 168.3 131 59.5
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 5.1e-40 167.9 133 59.4
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 5.1e-40 167.9 131 60.3
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 5.1e-40 167.9 120 63.3
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 6.6e-40 167.5 133 62.4
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 1.1e-39 166.8 115 66.1
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 1.1e-39 166.8 115 66.1
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.5e-39 166.4 118 63.6
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 1.5e-39 166.4 117 62.4
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 1.9e-39 166.0 132 59.8
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 1.9e-39 166.0 118 63.6
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 2.5e-39 165.6 131 61.8
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 2.5e-39 165.6 124 63.7
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 2.5e-39 165.6 108 67.6
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 2.5e-39 165.6 108 67.6
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 2.5e-39 165.6 120 64.2
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 2.5e-39 165.6 117 63.2
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 2.5e-39 165.6 123 63.4
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 3.3e-39 165.2 132 59.8
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 3.3e-39 165.2 115 66.1
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 3.3e-39 165.2 117 61.5
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 3.3e-39 165.2 127 62.2
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 3.3e-39 165.2 128 60.2
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 3.3e-39 165.2 117 65.0
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 3.3e-39 165.2 117 65.0
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 4.3e-39 164.9 112 64.3
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 4.3e-39 164.9 115 63.5
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 5.6e-39 164.5 132 59.8
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 5.6e-39 164.5 126 60.3
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 7.3e-39 164.1 124 62.9
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 7.3e-39 164.1 109 67.0
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 9.6e-39 163.7 117 62.4
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 9.6e-39 163.7 110 64.5
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 9.6e-39 163.7 117 64.1
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 1.3e-38 163.3 132 59.1
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 1.3e-38 163.3 131 61.1
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 1.3e-38 163.3 108 69.4
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 1.6e-38 162.9 117 64.1
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 1.6e-38 162.9 131 58.0
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 1.6e-38 162.9 112 63.4
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 2.1e-38 162.5 115 62.6
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 2.8e-38 162.2 117 62.4
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 2.8e-38 162.2 119 63.0
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 2.8e-38 162.2 118 61.9
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 1.1e-37 160.2 117 60.7
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 1.4e-37 159.8 117 60.7
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 1.4e-37 159.8 134 56.7
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 1.8e-37 159.5 119 63.0
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 3.1e-37 158.7 115 60.9
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 4.0e-37 158.3 117 59.8
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 4.0e-37 158.3 115 59.1
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 5.3e-37 157.9 117 59.0
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 6.9e-37 157.5 117 59.0
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 6.9e-37 157.5 117 59.0
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 6.9e-37 157.5 131 58.8
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 9.0e-37 157.1 117 59.0
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 9.0e-37 157.1 115 65.2
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 1.2e-36 156.8 117 59.0
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 1.5e-36 156.4 117 58.1
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 1.5e-36 156.4 117 58.1
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 1.5e-36 156.4 117 58.1
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.5e-36 156.4 117 59.0
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 2.0e-36 156.0 117 59.0
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.0e-36 156.0 117 61.5
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 2.6e-36 155.6 133 55.6
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 2.6e-36 155.6 133 55.6
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 2.6e-36 155.6 133 55.6
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 2.6e-36 155.6 133 55.6
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 2.6e-36 155.6 133 55.6
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 2.6e-36 155.6 117 59.0
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 3.4e-36 155.2 112 60.7
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 3.4e-36 155.2 133 54.9
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 3.4e-36 155.2 123 56.9
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 3.4e-36 155.2 132 59.1
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 3.4e-36 155.2 125 58.4
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 4.4e-36 154.8 117 57.3
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 4.4e-36 154.8 132 59.1
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 7.6e-36 154.1 117 56.4
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 1.7e-35 152.9 131 59.5
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.7e-35 152.9 106 61.3
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 2.9e-35 152.1 131 55.7
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 3.8e-35 151.8 131 56.5
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 8.4e-35 150.6 145 51.0
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 1.1e-34 150.2 105 60.0
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 1.4e-34 149.8 106 60.4
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 3.2e-34 148.7 123 60.2
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 5.4e-34 147.9 131 54.2
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 2.1e-33 146.0 107 62.6
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 2.1e-33 146.0 124 53.2
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 2.7e-33 145.6 104 62.5
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 6.0e-33 144.4 135 52.6
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 7.9e-33 144.1 125 55.2
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 1.7e-32 142.9 123 57.7
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 1.7e-32 142.9 91 72.5
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 2.4e-29 132.5 113 52.2
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 1.3e-22 110.2 78 65.4
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 6.9e-21 104.4 85 60.0
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 1.2e-17 93.6 81 49.4
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 1.8e-16 89.7 56 78.6
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 3.9e-16 88.6 60 71.7
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 3.3e-15 85.5 64 50.0
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 2.1e-14 82.8 66 53.0
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 2.8e-14 82.4 60 53.3
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 5.3e-13 78.2 72 45.8
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 2.0e-12 76.3 61 47.5
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 3.4e-12 75.5 51 62.7
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 9.3e-10 67.4 96 36.5
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 1.1e-07 60.5 52 51.9


User provided reference genes

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