Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 8.7e-194 680.2 374 100.0
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 8.5e-56 221.9 370 43.2
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 1.9e-55 220.7 373 44.5
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 2.5e-52 210.3 369 40.7
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 4.1e-50 203.0 362 40.9
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 9.1e-50 201.8 368 40.5
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 2.0e-49 200.7 362 40.9
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 5.9e-49 199.1 359 40.1
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 1.0e-48 198.4 369 40.7
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 1.0e-48 198.4 395 38.7
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 1.0e-48 198.4 366 39.6
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 1.3e-48 198.0 421 37.8
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 1.3e-48 198.0 367 40.9
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 2.2e-48 197.2 371 40.2
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 2.9e-48 196.8 370 40.8
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 5.0e-48 196.1 365 40.5
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 5.0e-48 196.1 376 40.4
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 5.0e-48 196.1 366 40.2
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 6.5e-48 195.7 365 40.8
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 6.5e-48 195.7 367 39.2
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 6.5e-48 195.7 369 40.1
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 1.1e-47 194.9 371 38.5
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.1e-47 194.9 366 38.5
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 1.1e-47 194.9 362 40.3
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 1.4e-47 194.5 361 39.3
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 1.4e-47 194.5 368 41.3
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 1.9e-47 194.1 371 39.1
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 2.5e-47 193.7 366 41.5
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 4.2e-47 193.0 360 40.8
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 4.2e-47 193.0 360 40.8
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 5.5e-47 192.6 368 41.6
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 5.5e-47 192.6 367 40.3
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 7.2e-47 192.2 368 38.0
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 1.2e-46 191.4 370 40.3
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.2e-46 191.4 369 39.0
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 1.6e-46 191.0 369 39.0
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 2.1e-46 190.7 359 38.7
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 2.1e-46 190.7 368 38.9
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 2.1e-46 190.7 361 40.2
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 2.7e-46 190.3 385 38.7
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 4.7e-46 189.5 372 39.2
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 4.7e-46 189.5 372 39.2
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 4.7e-46 189.5 362 39.5
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 6.1e-46 189.1 367 40.1
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 6.1e-46 189.1 360 41.1
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.1e-46 189.1 369 38.8
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 6.1e-46 189.1 367 40.6
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 6.1e-46 189.1 369 39.6
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 7.9e-46 188.7 362 38.7
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 7.9e-46 188.7 362 37.8
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 7.9e-46 188.7 369 38.5
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 1.0e-45 188.3 369 38.5
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.0e-45 188.3 372 39.2
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 2.3e-45 187.2 382 38.2
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 2.3e-45 187.2 366 40.4
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.3e-45 187.2 364 38.5
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 3.0e-45 186.8 368 40.5
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 3.0e-45 186.8 370 38.9
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 6.7e-45 185.7 360 40.3
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 6.7e-45 185.7 361 38.5
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 8.8e-45 185.3 365 37.5
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 1.1e-44 184.9 378 37.0
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 1.5e-44 184.5 361 38.5
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 1.5e-44 184.5 358 37.2
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 2.0e-44 184.1 368 38.0
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 2.0e-44 184.1 359 38.7
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 2.0e-44 184.1 366 39.3
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 2.6e-44 183.7 361 37.7
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 3.3e-44 183.3 368 38.9
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 4.4e-44 183.0 370 39.5
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 5.7e-44 182.6 366 37.2
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 7.4e-44 182.2 360 40.0
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 7.4e-44 182.2 360 40.3
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 9.7e-44 181.8 360 40.6
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 9.7e-44 181.8 366 37.7
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 1.7e-43 181.0 362 37.6
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 1.7e-43 181.0 364 39.3
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 1.7e-43 181.0 362 39.5
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 3.7e-43 179.9 366 39.3
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 3.7e-43 179.9 362 37.6
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 3.7e-43 179.9 366 37.4
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 1.1e-42 178.3 371 37.5
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 1.4e-42 177.9 362 37.0
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 1.4e-42 177.9 361 37.1
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 2.4e-42 177.2 358 36.9
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 2.4e-42 177.2 382 37.4
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 2.4e-42 177.2 368 37.0
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 5.3e-42 176.0 374 38.5
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 5.3e-42 176.0 362 38.1
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 5.3e-42 176.0 362 38.1
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 7.0e-42 175.6 359 38.4
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 2.6e-41 173.7 344 39.2
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 3.5e-41 173.3 366 37.4
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 7.7e-41 172.2 358 38.8
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 5.5e-39 166.0 352 36.9
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 1.2e-38 164.9 365 35.6
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 3.6e-38 163.3 351 37.9
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 4.7e-38 162.9 374 36.1
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 3.9e-37 159.8 361 37.7
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 6.7e-37 159.1 364 36.3
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.5e-36 157.9 368 35.9
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.1e-34 149.8 275 40.7
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 5.3e-34 149.4 366 35.8
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 2.6e-33 147.1 357 35.0
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 7.7e-33 145.6 362 34.5
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 1.3e-32 144.8 363 34.7
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 1.7e-32 144.4 349 35.8
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 5.5e-31 139.4 364 33.0
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 2.1e-30 137.5 374 33.7
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.0e-28 131.0 263 39.5
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 7.5e-28 129.0 284 35.6
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 9.1e-26 122.1 235 42.1
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 1.0e-24 118.6 283 36.0
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 2.9e-24 117.1 301 33.6
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.5e-24 115.9 339 32.2
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 1.1e-23 115.2 178 40.4
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 9.4e-23 112.1 282 34.8
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 4.7e-22 109.8 302 33.8
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 2.6e-20 104.0 266 35.3
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.4e-20 103.6 176 39.8
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 7.0e-18 95.9 266 33.5
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 4.5e-17 93.2 151 39.1
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 5.0e-16 89.7 173 36.4
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.9e-15 87.8 128 46.1
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.0e-14 82.4 181 34.8
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 6.8e-13 79.3 132 44.7
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 1.5e-12 78.2 117 47.0
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 2.0e-12 77.8 81 50.6
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 7.5e-12 75.9 150 35.3
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 6.3e-11 72.8 82 51.2
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.5e-09 67.0 97 47.4
Cre01.g043400 Chlamydomonas reinhardtii HOM05D005278 ORTHO05D006500 1.9e-07 61.2 169 31.4


User provided reference genes

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