Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0044s0049 Marchantia polymorpha HOM05D001968 ORTHO05D001940 6.6e-91 337.4 178 100.0
Pp3c16_10550 Physcomitrium patens HOM05D001968 ORTHO05D001940 1.7e-25 120.2 167 43.1
Pp3c6_5350 Physcomitrium patens HOM05D001968 ORTHO05D001940 1.2e-23 114.0 170 41.2
Cfa007865 Carpinus fangiana HOM05D001968 ORTHO05D001940 7.4e-10 68.2 87 44.8
CiPaw.03G067000 Carya illinoinensis HOM05D001968 ORTHO05D001940 7.4e-10 68.2 114 36.0
Cfa007866 Carpinus fangiana HOM05D001968 ORTHO05D001940 2.2e-09 66.6 100 41.0
Sc10g0000950 Simmondsia chinensis HOM05D001968 ORTHO05D001940 2.2e-09 66.6 77 45.5
Sed0008137 Sechium edule HOM05D001968 ORTHO05D001940 2.8e-09 66.2 114 31.6
Manes.06G061500 Manihot esculenta HOM05D001968 ORTHO05D001940 3.7e-09 65.9 82 39.0
QL07p035396 Quercus lobata HOM05D001968 ORTHO05D001940 4.8e-09 65.5 88 37.5
Duzib251G0146 Durio zibethinus HOM05D001968 ORTHO05D001940 8.2e-09 64.7 82 40.2
Manes.14G135200 Manihot esculenta HOM05D001968 ORTHO05D001940 8.2e-09 64.7 96 38.5
QL02p048874 Quercus lobata HOM05D001968 ORTHO05D001940 8.2e-09 64.7 69 40.6
Os01g0121500 Oryza sativa ssp. japonica HOM05D001968 ORTHO05D001940 1.1e-08 64.3 93 38.7
MD09G1259700 Malus domestica HOM05D001968 ORTHO05D001940 1.8e-08 63.5 100 38.0
Manes.02G073500 Manihot esculenta HOM05D001968 ORTHO05D001940 1.8e-08 63.5 86 39.5
QL01p002142 Quercus lobata HOM05D001968 ORTHO05D001940 1.8e-08 63.5 74 39.2
QL02p048804 Quercus lobata HOM05D001968 ORTHO05D001940 1.8e-08 63.5 75 41.3
Cpa.g.sc65.117 Carica papaya HOM05D001968 ORTHO05D001940 2.4e-08 63.2 127 33.1
PSO017G4532 Papaver somniferum HOM05D001968 ORTHO05D001940 2.4e-08 63.2 127 27.6
SEGI_10494 Sequoiadendron giganteum HOM05D001968 ORTHO05D001940 2.4e-08 63.2 96 37.5
GSVIVG01030897001 Vitis vinifera HOM05D001968 ORTHO05D001940 2.4e-08 63.2 131 33.6
CAN.G625.73 Capsicum annuum HOM05D001968 ORTHO05D001940 3.1e-08 62.8 82 41.5
Cc11_g08920 Coffea canephora HOM05D001968 ORTHO05D001940 3.1e-08 62.8 84 38.1
HPP92_004880 Vanilla planifolia HOM05D001968 ORTHO05D001940 3.1e-08 62.8 79 44.3
MSTRG.887 Avicennia marina HOM05D001968 ORTHO05D001940 4.1e-08 62.4 77 40.3
Phvul.L001619 Phaseolus vulgaris HOM05D001968 ORTHO05D001940 4.1e-08 62.4 92 38.0
Potri.004G092800 Populus trichocarpa HOM05D001968 ORTHO05D001940 4.1e-08 62.4 84 36.9
SEGI_36587 Sequoiadendron giganteum HOM05D001968 ORTHO05D001940 4.1e-08 62.4 71 45.1
VMungo1383G1229 Vigna mungo HOM05D001968 ORTHO05D001940 4.1e-08 62.4 93 40.9
Duzib248G0253 Durio zibethinus HOM05D001968 ORTHO05D001940 5.3e-08 62.0 81 37.0
MD16G1030500 Malus domestica HOM05D001968 ORTHO05D001940 5.3e-08 62.0 83 41.0
SEGI_03175 Sequoiadendron giganteum HOM05D001968 ORTHO05D001940 5.3e-08 62.0 91 38.5
Solyc02g091260.1 Solanum lycopersicum HOM05D001968 ORTHO05D001940 5.3e-08 62.0 82 40.2
Sopen02g035880 Solanum pennellii HOM05D001968 ORTHO05D001940 5.3e-08 62.0 82 40.2
Sopen04g002700 Solanum pennellii HOM05D001968 ORTHO05D001940 5.3e-08 62.0 79 35.4
TAR622G0368 Trochodendron aralioides HOM05D001968 ORTHO05D001940 5.3e-08 62.0 90 34.4
TAR629G0131 Trochodendron aralioides HOM05D001968 ORTHO05D001940 5.3e-08 62.0 79 34.2
Atru.chr11.389 Acer truncatum HOM05D001968 ORTHO05D001940 7.0e-08 61.6 114 32.5
Nn3g18058 Nelumbo nucifera HOM05D001968 ORTHO05D001940 7.0e-08 61.6 84 36.9
Nitab4.5_0003598g0120 Nicotiana tabacum HOM05D001968 ORTHO05D001940 7.0e-08 61.6 84 40.5
Manes.14G135300 Manihot esculenta HOM05D001968 ORTHO05D001940 9.1e-08 61.2 82 34.1
Prupe.3G151400 Prunus persica HOM05D001968 ORTHO05D001940 9.1e-08 61.2 81 35.8
SEGI_34987 Sequoiadendron giganteum HOM05D001968 ORTHO05D001940 9.1e-08 61.2 83 37.3
Solyc04g007620.1 Solanum lycopersicum HOM05D001968 ORTHO05D001940 9.1e-08 61.2 83 34.9
Sopen05g004190 Solanum pennellii HOM05D001968 ORTHO05D001940 9.1e-08 61.2 83 34.9
Thecc.04G124200 Theobroma cacao HOM05D001968 ORTHO05D001940 9.1e-08 61.2 85 36.5
Dinv33985 Davidia involucrata HOM05D000692 ORTHO05D000533 1.2e-07 60.8 85 38.8
Gohir.A12G055900 Gossypium hirsutum HOM05D001968 ORTHO05D001940 1.2e-07 60.8 97 32.0
Thecc.04G124300 Theobroma cacao HOM05D001968 ORTHO05D001940 1.2e-07 60.8 130 33.1
BcaB03g13077 Brassica carinata HOM05D001968 ORTHO05D001940 1.6e-07 60.5 80 40.0
SEGI_32425 Sequoiadendron giganteum HOM05D001968 ORTHO05D001940 1.6e-07 60.5 98 36.7
HPP92_004832 Vanilla planifolia HOM05D001968 ORTHO05D001940 1.6e-07 60.5 73 42.5
HPP92_004835 Vanilla planifolia HOM05D001968 ORTHO05D001940 1.6e-07 60.5 73 42.5
CiPaw.06G013300 Carya illinoinensis HOM05D001968 ORTHO05D001940 2.0e-07 60.1 82 34.1
Dinv14867 Davidia involucrata HOM05D001968 ORTHO05D001940 2.0e-07 60.1 110 31.8
Lsat_1_v5_gn_3_54461 Lactuca sativa HOM05D001968 ORTHO05D001940 2.0e-07 60.1 82 36.6
Peaxi162Scf00119g01510 Petunia axillaris HOM05D001968 ORTHO05D001940 2.0e-07 60.1 82 37.8
Peaxi162Scf00205g00032 Petunia axillaris HOM05D001968 ORTHO05D001940 2.0e-07 60.1 140 30.7
SEGI_21443 Sequoiadendron giganteum HOM05D001968 ORTHO05D001940 2.0e-07 60.1 129 33.3
PGSC0003DMG400030508 Solanum tuberosum HOM05D001968 ORTHO05D001940 2.0e-07 60.1 79 35.4
BcaC07g38767 Brassica carinata HOM05D001968 ORTHO05D001940 2.6e-07 59.7 80 38.8
C08p17000 Brassica napus HOM05D001968 ORTHO05D001940 2.6e-07 59.7 80 38.8
PGSC0003DMG400005990 Solanum tuberosum HOM05D001968 ORTHO05D001940 2.6e-07 59.7 81 35.8
TWI31G1226 Tripterygium wilfordii HOM05D001968 ORTHO05D001940 2.6e-07 59.7 85 34.1
TAR374G0093 Trochodendron aralioides HOM05D001968 ORTHO05D001940 2.6e-07 59.7 76 34.2
TAR374G0206 Trochodendron aralioides HOM05D001968 ORTHO05D001940 2.6e-07 59.7 76 34.2
A08p31750 Brassica napus HOM05D001968 ORTHO05D001940 3.5e-07 59.3 80 38.8
BolC8t49325H Brassica oleracea HOM05D001968 ORTHO05D001940 3.5e-07 59.3 80 38.8
BraA08t35097Z Brassica rapa HOM05D001968 ORTHO05D001940 3.5e-07 59.3 80 38.8
Eucgr.F02812 Eucalyptus grandis HOM05D001968 ORTHO05D001940 3.5e-07 59.3 169 28.4
MBI16_g32958_MAGBIO Magnolia biondii HOM05D001968 ORTHO05D001940 3.5e-07 59.3 137 29.2
SEGI_02912 Sequoiadendron giganteum HOM05D001968 ORTHO05D001940 3.5e-07 59.3 138 32.6
SEGI_32172 Sequoiadendron giganteum HOM05D001968 ORTHO05D001940 3.5e-07 59.3 138 32.6
ATR0326G002 Amborella trichopoda HOM05D001968 ORTHO05D001940 4.5e-07 58.9 84 36.9
CiPaw.03G067100 Carya illinoinensis HOM05D001968 ORTHO05D001940 4.5e-07 58.9 87 37.9
Gohir.A07G075900 Gossypium hirsutum HOM05D001968 ORTHO05D001940 4.5e-07 58.9 76 39.5
Nitab4.5_0000414g0120 Nicotiana tabacum HOM05D001968 ORTHO05D001940 4.5e-07 58.9 126 31.0
Atru.chr1.1747 Acer truncatum HOM05D001968 ORTHO05D001940 5.9e-07 58.5 71 43.7
AT2G01300 Arabidopsis thaliana HOM05D001968 ORTHO05D001940 5.9e-07 58.5 77 36.4
Haze_11030 Corylus avellana HOM05D001968 ORTHO05D001940 5.9e-07 58.5 79 36.7
TWI53G0947 Tripterygium wilfordii HOM05D001968 ORTHO05D001940 5.9e-07 58.5 71 42.3
Atru.chr1.1726 Acer truncatum HOM05D001968 ORTHO05D001940 7.7e-07 58.2 71 43.7
Nitab4.5_0006134g0050 Nicotiana tabacum HOM05D001968 ORTHO05D001940 7.7e-07 58.2 73 38.4
Nitab4.5_0012569g0020 Nicotiana tabacum HOM05D001968 ORTHO05D001940 7.7e-07 58.2 69 37.7
TAR622G1432 Trochodendron aralioides HOM05D001968 ORTHO05D001940 7.7e-07 58.2 96 33.3
CiPaw.03G066800 Carya illinoinensis HOM05D001968 ORTHO05D001940 1.0e-06 57.8 81 32.1
MBI10_g07289_MAGBIO Magnolia biondii HOM05D001968 ORTHO05D001940 1.0e-06 57.8 79 34.2
Solyc05g008360.1 Solanum lycopersicum HOM05D001968 ORTHO05D001940 1.0e-06 57.8 73 38.4
Actinidia14948 Actinidia chinensis HOM05D001968 ORTHO05D001940 1.3e-06 57.4 97 34.0
ClCG01G006150 Citrullus lanatus HOM05D001968 ORTHO05D001940 1.3e-06 57.4 137 27.7
Migut.L00760 Erythranthe guttata HOM05D001968 ORTHO05D001940 1.3e-06 57.4 80 36.2
Eucgr.B02891 Eucalyptus grandis HOM05D001968 ORTHO05D001940 1.3e-06 57.4 79 38.0
Eucgr.B02892 Eucalyptus grandis HOM05D001968 ORTHO05D001940 1.3e-06 57.4 139 33.1
Oeu044338.1 Olea europaea HOM05D001968 ORTHO05D001940 1.3e-06 57.4 76 38.2
QL02p048959 Quercus lobata HOM05D001968 ORTHO05D001940 1.3e-06 57.4 85 34.1
SEGI_04402 Sequoiadendron giganteum HOM05D001968 ORTHO05D001940 1.3e-06 57.4 83 39.8
PGSC0003DMG400030672 Solanum tuberosum HOM05D001968 ORTHO05D001940 1.3e-06 57.4 93 36.6
Thecc.02G278700 Theobroma cacao HOM05D001968 ORTHO05D001940 1.3e-06 57.4 85 34.1
Cfa008582 Carpinus fangiana HOM05D001968 ORTHO05D001940 1.7e-06 57.0 79 35.4
MELO3C005312.2 Cucumis melo HOM05D001968 ORTHO05D001940 1.7e-06 57.0 75 33.3
Nitab4.5_0000414g0150 Nicotiana tabacum HOM05D001968 ORTHO05D001940 1.7e-06 57.0 135 29.6
Sed0015550 Sechium edule HOM05D001968 ORTHO05D001940 1.7e-06 57.0 82 34.1
A06p44500 Brassica napus HOM05D001968 ORTHO05D001940 2.2e-06 56.6 77 35.1
CARHR143830 Cardamine hirsuta HOM05D001968 ORTHO05D001940 2.2e-06 56.6 77 35.1
COL.COLO4_27128 Corchorus olitorius HOM05D001968 ORTHO05D001940 2.2e-06 56.6 87 37.9
DCAR_026765 Daucus carota HOM05D001968 ORTHO05D001940 2.2e-06 56.6 70 40.0
Nn3g18061 Nelumbo nucifera HOM05D001968 ORTHO05D001940 2.2e-06 56.6 88 33.0
TWI79G0294 Tripterygium wilfordii HOM05D001968 ORTHO05D001940 2.2e-06 56.6 85 31.8
Atru.chr1.1729 Acer truncatum HOM05D001968 ORTHO05D001940 2.9e-06 56.2 71 40.8
Atru.chr1.1743 Acer truncatum HOM05D001968 ORTHO05D001940 2.9e-06 56.2 71 40.8
Eucgr.B02890 Eucalyptus grandis HOM05D001968 ORTHO05D001940 2.9e-06 56.2 79 35.4
Nn4g24079 Nelumbo nucifera HOM05D001968 ORTHO05D001940 2.9e-06 56.2 84 34.5
Atru.chr1.1724 Acer truncatum HOM05D001968 ORTHO05D001940 3.8e-06 55.8 71 42.3
C07p31730 Brassica napus HOM05D001968 ORTHO05D001940 3.8e-06 55.8 77 35.1
BolC7t43712H Brassica oleracea HOM05D001968 ORTHO05D001940 3.8e-06 55.8 77 35.1
Lj5C433T2 Lonicera japonica HOM05D001968 ORTHO05D001940 3.8e-06 55.8 86 33.7
MSTRG.889 Avicennia marina HOM05D001968 ORTHO05D001940 5.0e-06 55.5 125 31.2
BcaC06g31317 Brassica carinata HOM05D001968 ORTHO05D001940 5.0e-06 55.5 77 33.8
CiPaw.07G082400 Carya illinoinensis HOM05D001968 ORTHO05D001940 5.0e-06 55.5 81 30.9
Haze_11031 Corylus avellana HOM05D001968 ORTHO05D001940 5.0e-06 55.5 79 31.6
QL02p048820 Quercus lobata HOM05D001968 ORTHO05D001940 6.5e-06 55.1 69 36.2
RcHm_v2.0_Chr4g0440931 Rosa chinensis HOM05D001968 ORTHO05D001940 6.5e-06 55.1 86 36.0
Dinv13011 Davidia involucrata HOM05D001968 ORTHO05D001940 8.5e-06 54.7 86 33.7
FAN07G2286 Fragaria x ananassa HOM05D001968 ORTHO05D001940 8.5e-06 54.7 86 37.2
Nn4g24081 Nelumbo nucifera HOM05D001968 ORTHO05D001940 8.5e-06 54.7 79 31.6
Prupe.1G322500 Prunus persica HOM05D001968 ORTHO05D001940 8.5e-06 54.7 85 35.3
Thecc.04G124100 Theobroma cacao HOM05D001968 ORTHO05D001940 8.5e-06 54.7 90 32.2
VMungo0720G1626 Vigna mungo HOM05D001968 ORTHO05D001940 8.5e-06 54.7 99 30.3


User provided reference genes

Program Settings