Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 0.0e+00 1145.6 563 100.0
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 2.7e-106 390.2 562 41.8
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.4e-78 298.1 520 35.4
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.8e-78 297.7 507 37.7
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 4.5e-77 293.1 497 36.6
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 5.1e-73 279.6 496 35.3
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 8.2e-71 272.3 472 36.2
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 1.1e-67 261.9 494 34.4
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 2.7e-66 257.3 539 33.0
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 8.0e-66 255.8 495 34.7
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 8.0e-66 255.8 494 34.2
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 8.0e-66 255.8 494 34.2
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 2.3e-65 254.2 492 35.6
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 2.3e-65 254.2 497 33.8
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 5.2e-65 253.1 491 34.4
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 5.2e-65 253.1 496 33.3
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 6.7e-65 252.7 551 31.8
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 8.8e-65 252.3 491 34.6
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 1.1e-64 251.9 492 34.3
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 1.5e-64 251.5 493 34.3
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 1.5e-64 251.5 532 33.1
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 2.6e-64 250.8 494 33.8
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 2.6e-64 250.8 504 32.7
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 5.7e-64 249.6 493 32.9
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 7.4e-64 249.2 502 32.9
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 7.4e-64 249.2 502 32.9
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 1.7e-63 248.1 491 33.4
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 1.7e-63 248.1 527 31.9
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 1.7e-63 248.1 492 34.1
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 2.2e-63 247.7 532 31.4
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 2.8e-63 247.3 491 35.4
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 2.8e-63 247.3 502 33.7
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 2.8e-63 247.3 507 34.1
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 3.7e-63 246.9 510 33.3
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 6.3e-63 246.1 510 32.4
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 8.2e-63 245.7 492 33.7
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 8.2e-63 245.7 501 33.5
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.1e-62 245.4 510 32.2
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 1.8e-62 244.6 495 33.3
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 1.8e-62 244.6 491 33.8
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 2.4e-62 244.2 491 33.6
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 3.1e-62 243.8 496 33.7
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 7.0e-62 242.7 497 34.0
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 9.1e-62 242.3 491 34.2
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 9.1e-62 242.3 539 31.4
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.2e-61 241.9 509 33.4
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 1.6e-61 241.5 497 32.8
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 1.6e-61 241.5 512 33.0
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 2.6e-61 240.7 492 32.9
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 7.7e-61 239.2 542 32.1
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 5.0e-60 236.5 515 32.0
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 8.5e-60 235.7 493 32.7
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 1.9e-59 234.6 502 32.1
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.5e-59 234.2 530 30.8
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 3.2e-59 233.8 496 33.7
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 9.4e-59 232.3 537 31.8
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 1.2e-58 231.9 492 31.1
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 2.1e-58 231.1 497 31.2
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 2.1e-58 231.1 493 32.7
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.7e-58 230.7 525 30.9
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 3.6e-58 230.3 502 31.3
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 3.6e-58 230.3 515 32.4
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 4.7e-58 229.9 502 30.7
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 6.1e-58 229.6 532 32.1
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 6.1e-58 229.6 533 30.8
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 8.0e-58 229.2 509 32.8
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 5.2e-57 226.5 492 31.9
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 5.2e-57 226.5 504 29.6
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 1.5e-56 224.9 491 32.8
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 1.5e-56 224.9 492 31.3
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 2.0e-56 224.6 548 30.5
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 2.6e-56 224.2 524 31.3
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 3.4e-56 223.8 490 33.1
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 4.4e-56 223.4 492 33.9
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 4.4e-56 223.4 524 32.8
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 7.5e-56 222.6 515 30.3
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 9.8e-56 222.2 489 33.7
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 9.8e-56 222.2 522 30.8
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 1.3e-55 221.9 490 32.0
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 1.3e-55 221.9 491 31.0
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 2.8e-55 220.7 493 32.0
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 2.8e-55 220.7 493 31.2
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 8.3e-55 219.2 494 31.2
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 8.3e-55 219.2 506 31.6
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.4e-54 218.4 491 31.8
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 1.8e-54 218.0 497 32.4
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 3.1e-54 217.2 492 31.7
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 7.0e-54 216.1 480 32.5
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 2.0e-53 214.5 499 31.1
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 2.7e-53 214.2 489 32.5
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 2.7e-53 214.2 489 32.5
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 2.7e-53 214.2 492 31.5
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 4.5e-53 213.4 490 31.4
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 5.9e-53 213.0 492 31.9
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 7.7e-53 212.6 492 32.7
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 1.0e-52 212.2 474 31.4
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 1.3e-52 211.8 492 31.5
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-52 211.8 560 30.4
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 1.7e-52 211.5 492 32.7
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 3.8e-52 210.3 485 32.4
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 5.0e-52 209.9 532 30.3
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 1.0e-49 202.2 539 31.4
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 7.5e-48 196.1 449 33.0
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 5.4e-46 189.9 433 31.2
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 1.6e-45 188.3 583 29.3
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 2.0e-45 188.0 239 44.4
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 1.1e-43 182.2 164 53.0
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 3.3e-43 180.6 184 46.7
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 3.3e-43 180.6 158 54.4
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 2.1e-42 177.9 288 38.9
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 1.8e-41 174.9 150 56.0
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 2.2e-39 167.9 579 26.3
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 4.9e-39 166.8 557 29.4
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 1.4e-38 165.2 148 52.0
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 2.7e-37 161.0 443 28.2
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.7e-37 161.0 153 51.6
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 7.8e-37 159.5 142 53.5
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.3e-36 158.7 162 50.0
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.1e-35 155.6 226 40.3
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 1.2e-34 152.1 493 27.4
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 7.0e-30 136.3 123 52.8
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 8.9e-25 119.4 127 47.2
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 9.8e-24 115.9 152 40.8
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 6.4e-23 113.2 128 50.0
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 3.1e-17 94.4 62 66.1
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 5.2e-17 93.6 92 50.0
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 5.8e-16 90.1 156 37.2
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 5.8e-16 90.1 82 54.9
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 1.7e-12 78.6 119 40.3
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 4.7e-10 70.5 93 41.9


User provided reference genes

Program Settings