Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0044s0017 Marchantia polymorpha HOM05D006754 ORTHO05D008403 6.7e-257 890.2 451 100.0
Pp3c1_41830 Physcomitrium patens HOM05D006754 ORTHO05D008403 1.0e-92 344.7 316 53.2
AagrBONN_evm.TU.Sc2ySwM_368.2585 Anthoceros agrestis HOM05D006754 ORTHO05D008403 6.3e-90 335.5 320 54.1
SMO356G0015 Selaginella moellendorffii HOM05D006754 ORTHO05D008403 5.6e-62 242.7 269 43.5
CSS0030688 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 8.3e-58 228.8 373 35.4
CSS0026926 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 3.2e-57 226.9 373 35.1
COL.COLO4_18549 Corchorus olitorius HOM05D006754 ORTHO05D008403 9.2e-57 225.3 317 39.1
Ciclev10030407m.g Citrus clementina HOM05D006754 ORTHO05D008403 7.8e-56 222.2 293 39.6
RcHm_v2.0_Chr5g0065861 Rosa chinensis HOM05D006754 ORTHO05D008403 3.9e-55 219.9 312 39.1
Potri.009G033700 Populus trichocarpa HOM05D006754 ORTHO05D008403 5.1e-55 219.5 293 39.2
Atru.chr3.3972 Acer truncatum HOM05D006754 ORTHO05D008403 8.6e-55 218.8 294 40.5
EL10Ac7g16047 Beta vulgaris HOM05D006754 ORTHO05D008403 1.2e-53 214.9 291 40.5
CiPaw.14G067200 Carya illinoinensis HOM05D006754 ORTHO05D008403 2.1e-53 214.2 293 37.9
Lsat_1_v5_gn_8_73421 Lactuca sativa HOM05D006754 ORTHO05D008403 3.6e-53 213.4 296 38.9
Glyma.08G227600 Glycine max HOM05D006754 ORTHO05D008403 8.1e-53 212.2 373 35.4
Gorai.009G097800 Gossypium raimondii HOM05D006754 ORTHO05D008403 8.1e-53 212.2 321 38.3
Sabra16G0147200 Salix brachista HOM05D006754 ORTHO05D008403 8.1e-53 212.2 291 38.5
Sc12g0001320 Simmondsia chinensis HOM05D006754 ORTHO05D008403 1.1e-52 211.8 305 39.3
Thecc.09G318400 Theobroma cacao HOM05D006754 ORTHO05D008403 1.4e-52 211.5 317 37.9
QL01p030969 Quercus lobata HOM05D006754 ORTHO05D008403 1.8e-52 211.1 295 37.6
Ah.15g097770 Amaranthus hybridus HOM05D006754 ORTHO05D008403 4.0e-52 209.9 293 39.6
MD03G1088200 Malus domestica HOM05D006754 ORTHO05D008403 4.0e-52 209.9 321 38.6
Nitab4.5_0007132g0020 Nicotiana tabacum HOM05D006754 ORTHO05D008403 4.0e-52 209.9 291 39.2
TWI79G1092 Tripterygium wilfordii HOM05D006754 ORTHO05D008403 4.0e-52 209.9 374 34.0
HanXRQChr05g0135011 Helianthus annuus HOM05D006754 ORTHO05D008403 6.8e-52 209.1 290 39.7
Potri.001G242400 Populus trichocarpa HOM05D006754 ORTHO05D008403 8.9e-52 208.8 291 38.5
VMungo1127G1194 Vigna mungo HOM05D006754 ORTHO05D008403 8.9e-52 208.8 373 35.4
FAN11G1342 Fragaria x ananassa HOM05D006754 ORTHO05D008403 2.0e-51 207.6 285 39.6
FvH4_3g36800 Fragaria vesca HOM05D006754 ORTHO05D008403 2.6e-51 207.2 284 39.8
FAN25G2379 Fragaria x ananassa HOM05D006754 ORTHO05D008403 2.6e-51 207.2 282 39.4
Glyma.15G221700 Glycine max HOM05D006754 ORTHO05D008403 2.6e-51 207.2 338 35.8
Gohir.A05G094100 Gossypium hirsutum HOM05D006754 ORTHO05D008403 2.6e-51 207.2 321 38.0
PSO339G3555 Papaver somniferum HOM05D006754 ORTHO05D008403 4.4e-51 206.5 296 37.2
Migut.F00608 Erythranthe guttata HOM05D006754 ORTHO05D008403 7.6e-51 205.7 319 37.9
FAN16G0425 Fragaria x ananassa HOM05D006754 ORTHO05D008403 1.3e-50 204.9 287 38.7
Lj2P1066T40 Lonicera japonica HOM05D006754 ORTHO05D008403 1.3e-50 204.9 293 37.5
Hma1.2p1_0615F.1_g189790 Hydrangea macrophylla HOM05D006754 ORTHO05D008403 1.7e-50 204.5 369 35.2
PSO063G1099 Papaver somniferum HOM05D006754 ORTHO05D008403 4.9e-50 203.0 296 36.5
CDE04G0725 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 8.4e-50 202.2 293 37.2
AUR62001757 Chenopodium quinoa HOM05D006754 ORTHO05D008403 8.4e-50 202.2 320 36.6
Nn8g38772 Nelumbo nucifera HOM05D006754 ORTHO05D008403 8.4e-50 202.2 284 38.4
Nitab4.5_0000272g0070 Nicotiana tabacum HOM05D006754 ORTHO05D008403 8.4e-50 202.2 263 42.2
Lj3g0006516 Lotus japonicus HOM05D006754 ORTHO05D008403 1.1e-49 201.8 318 35.2
Phvul.011G187300 Phaseolus vulgaris HOM05D006754 ORTHO05D008403 1.1e-49 201.8 327 36.4
Psat4g178480 Pisum sativum HOM05D006754 ORTHO05D008403 1.1e-49 201.8 323 36.2
MBI14_g12133_MAGBIO Magnolia biondii HOM05D006754 ORTHO05D008403 1.4e-49 201.4 297 38.7
PGSC0003DMG400030707 Solanum tuberosum HOM05D006754 ORTHO05D008403 1.4e-49 201.4 372 35.2
AT5G59500 Arabidopsis thaliana HOM05D006754 ORTHO05D008403 1.9e-49 201.1 281 39.1
Eucgr.B02322 Eucalyptus grandis HOM05D006754 ORTHO05D008403 3.2e-49 200.3 391 34.3
THA.LOC104799439 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 4.2e-49 199.9 306 38.2
CARHR285870 Cardamine hirsuta HOM05D006754 ORTHO05D008403 5.4e-49 199.5 286 39.2
AL8G35980 Arabidopsis lyrata HOM05D006754 ORTHO05D008403 7.1e-49 199.1 265 39.6
AUR62009543 Chenopodium quinoa HOM05D006754 ORTHO05D008403 7.1e-49 199.1 325 36.3
Ca_24122_v3 Cicer arietinum L. HOM05D006754 ORTHO05D008403 7.1e-49 199.1 323 36.5
Sopen07g003690 Solanum pennellii HOM05D006754 ORTHO05D008403 7.1e-49 199.1 379 33.8
CAN.G969.5 Capsicum annuum HOM05D006754 ORTHO05D008403 1.2e-48 198.4 296 36.5
Cpa.g.sc81.116 Carica papaya HOM05D006754 ORTHO05D008403 1.2e-48 198.4 287 38.7
Thhalv10015639m.g Eutrema salsugineum HOM05D006754 ORTHO05D008403 1.2e-48 198.4 282 39.7
PGR102G0280 Punica granatum HOM05D006754 ORTHO05D008403 1.6e-48 198.0 291 37.5
Solyc07g007700.3 Solanum lycopersicum HOM05D006754 ORTHO05D008403 2.1e-48 197.6 371 34.0
arahy.Tifrunner.gnm1.ann1.826T7K Arachis hypogaea HOM05D006754 ORTHO05D008403 2.7e-48 197.2 294 37.8
Duzib168G0850 Durio zibethinus HOM05D006754 ORTHO05D008403 2.7e-48 197.2 246 43.1
ATR0752G045 Amborella trichopoda HOM05D006754 ORTHO05D008403 3.5e-48 196.8 295 36.6
MSTRG.21206 Avicennia marina HOM05D006754 ORTHO05D008403 3.5e-48 196.8 293 36.9
Aa31LG1G11840 Aethionema arabicum HOM05D006754 ORTHO05D008403 4.6e-48 196.4 289 38.1
Manes.01G171100 Manihot esculenta HOM05D006754 ORTHO05D008403 4.6e-48 196.4 293 36.9
Cc01_g13150 Coffea canephora HOM05D006754 ORTHO05D008403 6.0e-48 196.1 290 38.3
Sed0002230 Sechium edule HOM05D006754 ORTHO05D008403 6.0e-48 196.1 274 39.1
CsaV3_1G034490 Cucumis sativus L. HOM05D006754 ORTHO05D008403 7.8e-48 195.7 295 37.3
CDE07G0060 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 1.0e-47 195.3 286 35.7
DCAR_005953 Daucus carota HOM05D006754 ORTHO05D008403 1.0e-47 195.3 294 38.1
THA.LOC104814881 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 1.0e-47 195.3 329 37.7
Haze_24130 Corylus avellana HOM05D006754 ORTHO05D008403 1.3e-47 194.9 295 37.3
Medtr8g044030 Medicago truncatula HOM05D006754 ORTHO05D008403 1.3e-47 194.9 263 38.4
BcaC04g19764 Brassica carinata HOM05D006754 ORTHO05D008403 5.1e-47 193.0 290 41.0
C09p51900 Brassica napus HOM05D006754 ORTHO05D008403 5.1e-47 193.0 290 41.0
BolC9t58053H Brassica oleracea HOM05D006754 ORTHO05D008403 5.1e-47 193.0 290 41.0
ClCG03G001330 Citrullus lanatus HOM05D006754 ORTHO05D008403 5.1e-47 193.0 274 38.7
Prupe.6G072500 Prunus persica HOM05D006754 ORTHO05D008403 5.1e-47 193.0 302 37.7
CANSAT56G3630 Cannabis sativa HOM05D006754 ORTHO05D008403 8.7e-47 192.2 290 36.2
BcaB08g36252 Brassica carinata HOM05D006754 ORTHO05D008403 1.1e-46 191.8 292 39.0
BraA10t43752Z Brassica rapa HOM05D006754 ORTHO05D008403 1.1e-46 191.8 290 40.7
Sp6g21200 Schrenkiella parvula HOM05D006754 ORTHO05D008403 1.1e-46 191.8 286 38.1
Carub.0008s2018 Capsella rubella HOM05D006754 ORTHO05D008403 1.5e-46 191.4 274 38.3
A10p16710 Brassica napus HOM05D006754 ORTHO05D008403 1.9e-46 191.0 290 40.3
Aqoxy2G02260 Aquilegia oxysepala HOM05D006754 ORTHO05D008403 3.3e-46 190.3 296 35.1
SalBow7G2225 Salvia bowleyana HOM05D006754 ORTHO05D008403 9.6e-46 188.7 300 38.3
Oeu026710.1 Olea europaea HOM05D006754 ORTHO05D008403 1.3e-45 188.3 293 37.2
SalBow7G4834 Salvia bowleyana HOM05D006754 ORTHO05D008403 2.1e-45 187.6 300 38.0
Dinv22095 Davidia involucrata HOM05D006754 ORTHO05D008403 2.8e-45 187.2 255 40.8
SGA_v2.0_scaffold51G18718 Striga asiatica HOM05D006754 ORTHO05D008403 5.3e-44 183.0 286 35.3
FAN21G1313 Fragaria x ananassa HOM05D006754 ORTHO05D008403 1.2e-43 181.8 331 34.1
CBR_g46210 Chara braunii HOM05D006754 ORTHO05D008403 2.0e-43 181.0 312 37.5
unitig_37.g12673 Utricularia gibba HOM05D006754 ORTHO05D008403 2.2e-42 177.6 265 37.4
Dinv09390 Davidia involucrata HOM05D006754 ORTHO05D008403 2.9e-42 177.2 254 41.3
Sed0016816 Sechium edule HOM05D006754 ORTHO05D008403 1.9e-38 164.5 293 33.8
Lalb_Chr01g0007611 Lupinus albus HOM05D006754 ORTHO05D008403 9.9e-35 152.1 320 31.2
Peaxi162Scf00122g00144 Petunia axillaris HOM05D006754 ORTHO05D008403 8.7e-31 139.0 277 31.4
TPR.G35751 Trifolium pratense HOM05D006754 ORTHO05D008403 8.7e-31 139.0 141 48.9
Gohir.D05G094600 Gossypium hirsutum HOM05D006754 ORTHO05D008403 1.5e-27 128.3 248 32.7
SEGI_33641 Sequoiadendron giganteum HOM05D006754 ORTHO05D008403 1.3e-26 125.2 214 37.9
ECA236G3563 Erigeron canadensis HOM05D006754 ORTHO05D008403 1.7e-26 124.8 169 43.2
GSVIVG01024926001 Vitis vinifera HOM05D006754 ORTHO05D008403 1.6e-24 118.2 321 28.7
Oeu004165.1 Olea europaea HOM05D006754 ORTHO05D008403 4.6e-24 116.7 305 28.5
Cre01.g049750 Chlamydomonas reinhardtii HOM05D006754 ORTHO05D008403 5.3e-20 103.2 215 35.3
Dinv06263 Davidia involucrata HOM05D006754 ORTHO05D008403 5.3e-20 103.2 97 53.6
C03p13670 Brassica napus HOM05D006754 ORTHO05D008403 6.5e-18 96.3 124 42.7
BolC3t13816H Brassica oleracea HOM05D006754 ORTHO05D008403 6.5e-18 96.3 124 42.7
HPP92_027965 Vanilla planifolia HOM05D006754 ORTHO05D008403 1.1e-17 95.5 168 32.1
Nn4g26458 Nelumbo nucifera HOM05D006754 ORTHO05D008403 2.0e-11 74.7 118 32.2
HPP92_001678 Vanilla planifolia HOM05D006754 ORTHO05D008403 3.8e-10 70.5 130 30.8
BcaB05g22514 Brassica carinata HOM05D006754 ORTHO05D008403 5.1e-07 60.1 157 33.8


User provided reference genes

Program Settings