Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0043s0121 Marchantia polymorpha HOM05D000434 ORTHO05D005992 1.9e-234 815.5 407 100.0
AagrBONN_evm.TU.Sc2ySwM_368.1237 Anthoceros agrestis HOM05D000434 ORTHO05D005992 4.9e-73 279.3 219 61.2
Aa31LG7G11140 Aethionema arabicum HOM05D000434 ORTHO05D005992 5.1e-46 189.5 308 39.0
GSVIVG01007623001 Vitis vinifera HOM05D000434 ORTHO05D005992 2.5e-45 187.2 318 35.5
Nn4g22577 Nelumbo nucifera HOM05D000434 ORTHO05D005992 4.3e-45 186.4 316 36.1
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 7.3e-45 185.7 303 36.6
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 7.3e-45 185.7 303 36.6
Pp3c15_10910 Physcomitrium patens HOM05D000434 ORTHO05D005992 9.6e-45 185.3 310 34.5
Pp3c23_9280 Physcomitrium patens HOM05D000434 ORTHO05D005992 9.6e-45 185.3 311 35.7
Glyma.17G125000 Glycine max HOM05D000434 ORTHO05D005992 1.2e-44 184.9 312 36.2
Lj4g0020673 Lotus japonicus HOM05D000434 ORTHO05D005992 1.2e-44 184.9 318 35.5
Phvul.003G206000 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.2e-44 184.9 311 36.3
Sp7g22710 Schrenkiella parvula HOM05D000434 ORTHO05D005992 1.2e-44 184.9 309 36.6
TPR.G35602 Trifolium pratense HOM05D000434 ORTHO05D005992 1.2e-44 184.9 322 36.0
arahy.Tifrunner.gnm1.ann1.Z1M7DP Arachis hypogaea HOM05D000434 ORTHO05D005992 1.6e-44 184.5 324 36.1
Gohir.A03G074900 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.1e-44 184.1 319 35.4
Duzib068G0672 Durio zibethinus HOM05D000434 ORTHO05D005992 2.8e-44 183.7 320 35.0
VMungo1215G0774 Vigna mungo HOM05D000434 ORTHO05D005992 3.6e-44 183.3 322 35.1
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 6.2e-44 182.6 303 36.3
Thhalv10025788m.g Eutrema salsugineum HOM05D000434 ORTHO05D005992 6.2e-44 182.6 309 35.9
Medtr3g076590 Medicago truncatula HOM05D000434 ORTHO05D005992 6.2e-44 182.6 306 36.9
arahy.Tifrunner.gnm1.ann1.D0ANT3 Arachis hypogaea HOM05D000434 ORTHO05D005992 1.1e-43 181.8 317 36.0
Ca_16123_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 1.1e-43 181.8 311 35.7
VMungo1309G2156 Vigna mungo HOM05D000434 ORTHO05D005992 1.4e-43 181.4 313 36.4
Carub.0007s1633 Capsella rubella HOM05D000434 ORTHO05D005992 1.8e-43 181.0 312 35.6
CsaV3_1G008920 Cucumis sativus L. HOM05D000434 ORTHO05D005992 1.8e-43 181.0 329 33.7
Glyma.05G042300 Glycine max HOM05D000434 ORTHO05D005992 1.8e-43 181.0 303 37.0
Medtr4g104690 Medicago truncatula HOM05D000434 ORTHO05D005992 2.4e-43 180.6 296 36.1
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 3.1e-43 180.3 303 36.0
COL.COLO4_21936 Corchorus olitorius HOM05D000434 ORTHO05D005992 3.1e-43 180.3 309 34.3
QL10p006660 Quercus lobata HOM05D000434 ORTHO05D005992 4.0e-43 179.9 313 35.8
FAN18G2656 Fragaria x ananassa HOM05D000434 ORTHO05D005992 5.2e-43 179.5 337 33.8
Lalb_Chr08g0236831 Lupinus albus HOM05D000434 ORTHO05D005992 5.2e-43 179.5 317 35.6
Potri.012G089400 Populus trichocarpa HOM05D000434 ORTHO05D005992 5.2e-43 179.5 318 35.5
Prupe.5G164400 Prunus persica HOM05D000434 ORTHO05D005992 5.2e-43 179.5 322 33.9
AT4G24730 Arabidopsis thaliana HOM05D000434 ORTHO05D005992 6.8e-43 179.1 307 35.5
FvH4_5g06420 Fragaria vesca HOM05D000434 ORTHO05D005992 6.8e-43 179.1 329 33.7
Sed0014341 Sechium edule HOM05D000434 ORTHO05D005992 1.2e-42 178.3 317 34.1
TWI39G0022 Tripterygium wilfordii HOM05D000434 ORTHO05D005992 1.2e-42 178.3 318 34.6
LjContig00127g0004723 Lotus japonicus HOM05D000434 ORTHO05D005992 1.5e-42 177.9 311 35.7
Phvul.009G172800 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.5e-42 177.9 312 36.2
Os07g0688000 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 2.0e-42 177.6 298 36.2
AL7G28460 Arabidopsis lyrata HOM05D000434 ORTHO05D005992 2.6e-42 177.2 301 35.9
MELO3C002306.2 Cucumis melo HOM05D000434 ORTHO05D005992 2.6e-42 177.2 329 33.4
FAN04G1602 Fragaria x ananassa HOM05D000434 ORTHO05D005992 2.6e-42 177.2 329 34.0
MD14G1170200 Malus domestica HOM05D000434 ORTHO05D005992 2.6e-42 177.2 329 33.4
Phvul.009G172700 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 2.6e-42 177.2 312 35.6
AUR62001199 Chenopodium quinoa HOM05D000434 ORTHO05D005992 3.4e-42 176.8 309 35.6
FAN08G0399 Fragaria x ananassa HOM05D000434 ORTHO05D005992 3.4e-42 176.8 329 33.7
ClCG03G003070 Citrullus lanatus HOM05D000434 ORTHO05D005992 4.4e-42 176.4 323 33.4
CARHR232100 Cardamine hirsuta HOM05D000434 ORTHO05D005992 5.8e-42 176.0 307 35.8
Oeu036498.1 Olea europaea HOM05D000434 ORTHO05D005992 5.8e-42 176.0 318 34.9
Sabra12G0064400 Salix brachista HOM05D000434 ORTHO05D005992 5.8e-42 176.0 341 33.7
EL10Ac7g17989 Beta vulgaris HOM05D000434 ORTHO05D005992 9.9e-42 175.3 309 34.3
Cpa.g.sc968.1 Carica papaya HOM05D000434 ORTHO05D005992 9.9e-42 175.3 312 33.3
Haze_07598 Corylus avellana HOM05D000434 ORTHO05D005992 9.9e-42 175.3 379 32.2
ECA232G2851 Erigeron canadensis HOM05D000434 ORTHO05D005992 1.3e-41 174.9 296 35.8
Eucgr.B00212 Eucalyptus grandis HOM05D000434 ORTHO05D005992 1.3e-41 174.9 315 34.9
MBI06_g22722_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005992 1.3e-41 174.9 307 34.9
PGR083G1106 Punica granatum HOM05D000434 ORTHO05D005992 1.3e-41 174.9 315 34.6
SEGI_02641 Sequoiadendron giganteum HOM05D000434 ORTHO05D005992 1.3e-41 174.9 323 34.4
VMungo1309G2109 Vigna mungo HOM05D000434 ORTHO05D005992 1.7e-41 174.5 311 36.0
BcaC09g50836 Brassica carinata HOM05D000434 ORTHO05D001445 2.2e-41 174.1 294 36.4
Ca_19422_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 2.2e-41 174.1 312 34.3
HanXRQChr09g0272611 Helianthus annuus HOM05D000434 ORTHO05D005992 2.2e-41 174.1 310 35.8
Phvul.009G172900 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 2.2e-41 174.1 310 36.5
Psat4g061720 Pisum sativum HOM05D000434 ORTHO05D005992 2.2e-41 174.1 324 34.0
ATR0122G026 Amborella trichopoda HOM05D000434 ORTHO05D005992 2.9e-41 173.7 309 35.0
CANSAT80G1313 Cannabis sativa HOM05D000434 ORTHO05D005992 2.9e-41 173.7 304 34.5
CANSAT80G2029 Cannabis sativa HOM05D000434 ORTHO05D005992 2.9e-41 173.7 304 33.9
Cfa019231 Carpinus fangiana HOM05D000434 ORTHO05D005992 2.9e-41 173.7 379 32.2
Lalb_Chr07g0183021 Lupinus albus HOM05D000434 ORTHO05D005992 2.9e-41 173.7 309 35.9
Os08g0557200 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 2.9e-41 173.7 313 34.5
THA.LOC104824991 Tarenaya hassleriana HOM05D000434 ORTHO05D005992 2.9e-41 173.7 306 35.3
TAR622G0355 Trochodendron aralioides HOM05D000434 ORTHO05D005992 2.9e-41 173.7 322 34.2
RcHm_v2.0_Chr7g0192361 Rosa chinensis HOM05D000434 ORTHO05D005992 4.9e-41 172.9 309 34.3
VMungo1309G2813 Vigna mungo HOM05D000434 ORTHO05D005992 4.9e-41 172.9 312 34.6
Glyma.06G176500 Glycine max HOM05D000434 ORTHO05D005992 6.4e-41 172.6 315 35.2
Manes.06G111500 Manihot esculenta HOM05D000434 ORTHO05D005992 6.4e-41 172.6 313 33.2
Psat5g116720 Pisum sativum HOM05D000434 ORTHO05D005992 6.4e-41 172.6 301 36.2
TPR.G37491 Trifolium pratense HOM05D000434 ORTHO05D007220 6.4e-41 172.6 329 33.4
COL.COLO4_20637 Corchorus olitorius HOM05D000434 ORTHO05D005992 1.1e-40 171.8 311 33.1
Gohir.A12G185500 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.1e-40 171.8 310 34.5
Ciclev10021198m.g Citrus clementina HOM05D000434 ORTHO05D005992 1.4e-40 171.4 318 34.6
Ah.08g218690 Amaranthus hybridus HOM05D000434 ORTHO05D007220 1.9e-40 171.0 312 34.0
Aqoxy5G03716 Aquilegia oxysepala HOM05D000434 ORTHO05D005992 1.9e-40 171.0 296 34.8
Gorai.008G202000 Gossypium raimondii HOM05D000434 ORTHO05D005992 1.9e-40 171.0 310 33.9
Lj5P131T21 Lonicera japonica HOM05D000434 ORTHO05D005992 1.9e-40 171.0 322 33.5
Sopen03g031180 Solanum pennellii HOM05D000434 ORTHO05D005992 1.9e-40 171.0 318 33.6
CiPaw.12G032200 Carya illinoinensis HOM05D000434 ORTHO05D005992 2.4e-40 170.6 316 32.3
Lalb_Chr13g0297571 Lupinus albus HOM05D000434 ORTHO05D005992 2.4e-40 170.6 323 34.7
Thecc.03G116300 Theobroma cacao HOM05D000434 ORTHO05D005992 3.2e-40 170.2 307 34.2
Rhsim12G0168500 Rhododendron simsii HOM05D000434 ORTHO05D005992 5.4e-40 169.5 318 34.3
Glyma.06G176400 Glycine max HOM05D000434 ORTHO05D005992 9.3e-40 168.7 312 33.7
Gohir.D03G101700 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.2e-39 168.3 290 36.2
Solyc03g112080.1 Solanum lycopersicum HOM05D000434 ORTHO05D005992 1.2e-39 168.3 318 33.3
Aa31LG7G11150 Aethionema arabicum HOM05D000434 ORTHO05D005992 1.6e-39 167.9 308 35.7
Gorai.003G107100 Gossypium raimondii HOM05D000434 ORTHO05D005992 1.6e-39 167.9 290 35.9
Lsat_1_v5_gn_4_79260 Lactuca sativa HOM05D000434 ORTHO05D005992 1.6e-39 167.9 306 34.6
Sc04g0001380 Simmondsia chinensis HOM05D000434 ORTHO05D005992 1.6e-39 167.9 309 34.3
PGSC0003DMG400018193 Solanum tuberosum HOM05D000434 ORTHO05D005992 2.1e-39 167.5 318 33.0
Gohir.D12G188284 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.7e-39 167.2 296 34.8
Cc04_g11350 Coffea canephora HOM05D000434 ORTHO05D005992 4.6e-39 166.4 318 34.0
CSS0032276 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 6.0e-39 166.0 323 32.5
AUR62022129 Chenopodium quinoa HOM05D000434 ORTHO05D005992 1.3e-38 164.9 309 34.0
DCAR_007452 Daucus carota HOM05D000434 ORTHO05D007220 1.3e-38 164.9 304 33.6
Nitab4.5_0008037g0030 Nicotiana tabacum HOM05D000434 ORTHO05D005992 2.3e-38 164.1 318 32.7
Peaxi162Scf00801g00033 Petunia axillaris HOM05D000434 ORTHO05D005992 2.3e-38 164.1 309 34.3
Peaxi162Scf00089g01220 Petunia axillaris HOM05D000434 ORTHO05D005992 3.0e-38 163.7 296 34.8
Zm00001eb176220 Zea mays HOM05D000434 ORTHO05D005992 3.0e-38 163.7 299 34.8
Nitab4.5_0000025g0390 Nicotiana tabacum HOM05D000434 ORTHO05D005992 3.9e-38 163.3 318 33.3
Nitab4.5_0002522g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.5e-37 161.4 318 32.7
CDE09G0062 Ceratophyllum demersum HOM05D000434 ORTHO05D005992 1.9e-37 161.0 295 34.9
Zm00001eb306980 Zea mays HOM05D000434 ORTHO05D005992 1.9e-37 161.0 297 34.0
Nitab4.5_0001243g0040 Nicotiana tabacum HOM05D000434 ORTHO05D005992 3.3e-37 160.2 309 32.7
Migut.O00171 Erythranthe guttata HOM05D000434 ORTHO05D005992 5.6e-37 159.5 305 33.4
HPP92_004599 Vanilla planifolia HOM05D000434 ORTHO05D005992 5.6e-37 159.5 315 32.4
SGA_v2.0_scaffold114G31805 Striga asiatica HOM05D000434 ORTHO05D005992 7.3e-37 159.1 305 32.5
SalBow5G1452 Salvia bowleyana HOM05D000434 ORTHO05D005992 9.6e-37 158.7 318 32.1
MSTRG.4348 Avicennia marina HOM05D000434 ORTHO05D005992 1.6e-36 157.9 318 31.1
CAN.G126.46 Capsicum annuum HOM05D000434 ORTHO05D005992 1.6e-36 157.9 318 32.1
Oeu044591.1 Olea europaea HOM05D000434 ORTHO05D005992 1.6e-36 157.9 322 32.3
SalBow5G5274 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.6e-36 157.9 305 32.1
CBR_g48132 Chara braunii HOM05D000434 ORTHO05D005992 2.1e-36 157.5 304 33.2
MCO14G418 Micromonas commoda HOM05D000434 ORTHO05D005992 2.1e-36 157.5 370 31.1
PSO754G0021 Papaver somniferum HOM05D000434 ORTHO05D005992 3.6e-36 156.8 272 34.2
SGA_v2.0_scaffold90G27827 Striga asiatica HOM05D000434 ORTHO05D005992 6.2e-36 156.0 302 31.8
Sed0024178 Sechium edule HOM05D000434 ORTHO05D005992 5.3e-35 152.9 323 32.2
Mapoly0153s0032 Marchantia polymorpha HOM05D000434 ORTHO05D005992 1.5e-34 151.4 397 29.5
SalBow5G0725 Salvia bowleyana HOM05D000434 ORTHO05D005992 3.4e-34 150.2 293 32.4
unitig_22.g6297 Utricularia gibba HOM05D000434 ORTHO05D005992 3.4e-34 150.2 285 33.7
Migut.D02023 Erythranthe guttata HOM05D000434 ORTHO05D005992 4.4e-34 149.8 307 31.6
SMO361G0760 Selaginella moellendorffii HOM05D000434 ORTHO05D005992 7.6e-34 149.1 302 33.8
HanXRQChr05g0154811 Helianthus annuus HOM05D000434 ORTHO05D005992 2.9e-33 147.1 306 31.7
SalBow5G4047 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.4e-32 144.1 295 31.2
HanXRQChr02g0032551 Helianthus annuus HOM05D000434 ORTHO05D005992 4.2e-32 143.3 298 31.9
Atru.chr9.2595 Acer truncatum HOM05D000434 ORTHO05D005992 2.1e-31 141.0 316 31.0
AUR62028295 Chenopodium quinoa HOM05D000434 ORTHO05D005992 2.7e-31 140.6 303 32.7
SHI03475 Sapria himalayana HOM05D000434 ORTHO05D005992 3.0e-30 137.1 288 32.3
Migut.L00359 Erythranthe guttata HOM05D000434 ORTHO05D005992 6.6e-30 136.0 292 31.8
Gohir.D12G188312 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.5e-29 134.0 294 32.7
Gorai.008G202100 Gossypium raimondii HOM05D000434 ORTHO05D005992 2.5e-29 134.0 294 32.7
CSS0026928 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 4.9e-25 119.8 214 32.2
Sabra15G0108100 Salix brachista HOM05D000434 ORTHO05D005992 6.4e-25 119.4 277 30.3
ECA233G1405 Erigeron canadensis HOM05D000434 ORTHO05D005992 2.1e-23 114.4 265 32.1
Migut.L00543 Erythranthe guttata HOM05D000434 ORTHO05D005992 4.6e-23 113.2 290 30.3
MCO10G403 Micromonas commoda HOM05D000434 ORTHO05D005992 2.8e-20 104.0 325 28.3
HPP92_020252 Vanilla planifolia HOM05D000434 ORTHO05D005992 1.6e-15 88.2 126 35.7
HanXRQChr09g0263851 Helianthus annuus HOM05D000434 ORTHO05D005992 2.1e-15 87.8 168 35.7
Potri.015G085232 Populus trichocarpa HOM05D000434 ORTHO05D005992 7.4e-13 79.3 118 41.5
Gohir.A12G185600 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.3e-12 78.6 113 41.6
SalBow5G4235 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.3e-12 78.6 156 27.6
SalBow5G1355 Salvia bowleyana HOM05D000434 ORTHO05D005992 8.4e-09 65.9 121 34.7
Pp3c2_17660 Physcomitrium patens HOM05D000434 ORTHO05D005992 1.9e-08 64.7 98 39.8


User provided reference genes

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