Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 2.6e-55 218.4 103 100.0
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 6.2e-25 117.5 109 56.9
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 8.1e-25 117.1 78 65.4
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 4.0e-24 114.8 92 58.7
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 1.5e-23 112.8 77 67.5
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 2.0e-23 112.5 79 65.8
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 2.6e-23 112.1 78 66.7
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 3.4e-23 111.7 77 64.9
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.4e-23 111.7 77 64.9
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.4e-23 111.7 77 64.9
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.4e-23 111.7 77 64.9
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 3.4e-23 111.7 79 64.6
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 4.4e-23 111.3 78 65.4
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 7.6e-23 110.5 77 64.9
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 9.9e-23 110.2 78 62.8
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 1.7e-22 109.4 78 61.5
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 2.2e-22 109.0 81 59.3
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 2.2e-22 109.0 80 62.5
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 2.2e-22 109.0 88 58.0
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 3.8e-22 108.2 76 60.5
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 3.8e-22 108.2 82 58.5
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 4.9e-22 107.8 87 59.8
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 4.9e-22 107.8 88 59.1
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 6.4e-22 107.5 81 59.3
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 6.4e-22 107.5 80 60.0
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 8.4e-22 107.1 87 58.6
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 8.4e-22 107.1 81 59.3
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 8.4e-22 107.1 79 63.3
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.1e-21 106.7 75 64.0
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 1.1e-21 106.7 77 59.7
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 1.4e-21 106.3 78 64.1
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 1.4e-21 106.3 89 61.8
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 1.9e-21 105.9 98 51.0
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 1.9e-21 105.9 94 56.4
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 1.9e-21 105.9 88 59.1
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 1.9e-21 105.9 88 59.1
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.4e-21 105.5 87 58.6
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.4e-21 105.5 83 60.2
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 3.2e-21 105.1 77 61.0
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 3.2e-21 105.1 77 61.0
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 3.2e-21 105.1 93 55.9
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 4.2e-21 104.8 81 58.0
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 4.2e-21 104.8 89 58.4
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 5.4e-21 104.4 78 57.7
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 5.4e-21 104.4 75 61.3
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 5.4e-21 104.4 78 61.5
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 9.2e-21 103.6 75 60.0
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 9.2e-21 103.6 87 57.5
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 9.2e-21 103.6 83 61.4
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 9.2e-21 103.6 78 60.3
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 1.2e-20 103.2 93 57.0
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 1.2e-20 103.2 78 59.0
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 1.2e-20 103.2 101 49.5
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 1.2e-20 103.2 91 54.9
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 1.2e-20 103.2 76 60.5
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 1.6e-20 102.8 106 52.8
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 1.6e-20 102.8 75 61.3
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 2.1e-20 102.4 78 60.3
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 2.1e-20 102.4 72 63.9
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 2.1e-20 102.4 87 57.5
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 2.1e-20 102.4 77 59.7
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 2.7e-20 102.1 77 61.0
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 3.5e-20 101.7 83 57.8
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 3.5e-20 101.7 91 54.9
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 3.5e-20 101.7 79 59.5
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 3.5e-20 101.7 76 60.5
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 4.6e-20 101.3 83 60.2
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 4.6e-20 101.3 83 60.2
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 6.0e-20 100.9 88 55.7
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 7.8e-20 100.5 93 53.8
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 7.8e-20 100.5 83 54.2
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 1.0e-19 100.1 78 62.8
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 1.0e-19 100.1 75 57.3
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 1.0e-19 100.1 76 59.2
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 1.7e-19 99.4 78 60.3
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.7e-19 99.4 100 51.0
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 1.7e-19 99.4 96 55.2
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 2.3e-19 99.0 88 54.5
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 3.0e-19 98.6 78 57.7
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 3.0e-19 98.6 76 59.2
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 3.9e-19 98.2 82 59.8
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 6.6e-19 97.4 113 45.1
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 6.6e-19 97.4 74 58.1
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 6.6e-19 97.4 75 57.3
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 8.7e-19 97.1 77 57.1
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 8.7e-19 97.1 98 54.1
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 8.7e-19 97.1 103 48.5
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.1e-18 96.7 74 56.8
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 1.5e-18 96.3 76 60.5
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.5e-18 95.5 100 48.0
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 3.3e-18 95.1 99 48.5
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 3.3e-18 95.1 86 52.3
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 9.6e-18 93.6 89 51.7
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.3e-17 93.2 77 57.1
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 1.6e-17 92.8 77 53.2
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 2.1e-17 92.4 82 53.7
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 2.8e-17 92.0 65 60.0
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 3.6e-17 91.7 65 61.5
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 3.6e-17 91.7 81 51.9
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 3.6e-17 91.7 65 61.5
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 4.8e-17 91.3 70 54.3
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 4.8e-17 91.3 70 54.3
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 6.2e-17 90.9 93 52.7
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 8.1e-17 90.5 79 58.2
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 8.1e-17 90.5 79 58.2
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 1.1e-16 90.1 65 61.5
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 1.1e-16 90.1 70 57.1
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 1.4e-16 89.7 82 52.4
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.4e-16 89.7 96 51.0
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 2.4e-16 89.0 86 52.3
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 3.1e-16 88.6 75 58.7
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 3.1e-16 88.6 107 49.5
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 3.1e-16 88.6 76 57.9
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 5.3e-16 87.8 100 48.0
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 6.9e-16 87.4 78 56.4
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 6.9e-16 87.4 89 49.4
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 1.5e-15 86.3 64 57.8
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 2.6e-15 85.5 64 57.8
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 3.4e-15 85.1 64 60.9
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 3.4e-15 85.1 75 54.7
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 3.4e-15 85.1 79 54.4
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 1.7e-14 82.8 67 56.7
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.2e-14 82.4 63 57.1
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 4.9e-14 81.3 98 43.9
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 8.4e-14 80.5 89 48.3
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 1.9e-13 79.3 75 50.7
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 4.2e-13 78.2 75 50.7
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 4.2e-13 78.2 75 50.7
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 4.2e-13 78.2 64 51.6
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 3.5e-12 75.1 81 46.9
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 4.6e-12 74.7 63 50.8
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 7.8e-12 73.9 66 51.5
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 1.7e-11 72.8 76 44.7
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 1.5e-10 69.7 92 48.9
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 5.6e-10 67.8 50 56.0
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 1.6e-09 66.2 63 50.8
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 1.6e-09 66.2 72 41.7
MCO08G099 Micromonas commoda HOM05D004858 ORTHO05D005600 3.6e-09 65.1 83 42.2
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 3.6e-09 65.1 79 46.8
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 1.8e-08 62.8 59 50.8
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 1.5e-07 59.7 52 55.8
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 4.5e-07 58.2 65 46.2
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 7.6e-07 57.4 49 51.0


User provided reference genes

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