Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 0.0e+00 1231.1 674 100.0
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 2.0e-156 557.0 604 52.8
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.6e-153 547.4 634 51.4
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 4.2e-138 496.1 583 47.2
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 2.1e-137 493.8 586 49.1
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 3.5e-137 493.0 575 49.2
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.8e-136 490.7 586 47.6
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 2.3e-136 490.3 591 47.7
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 4.3e-135 486.1 619 47.7
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 5.7e-135 485.7 592 48.1
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 7.4e-135 485.3 624 46.0
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 7.4e-135 485.3 603 46.8
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 2.2e-134 483.8 583 47.3
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 4.8e-134 482.6 588 46.8
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 1.1e-133 481.5 589 47.7
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.8e-133 480.7 604 46.4
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.8e-133 480.7 609 45.6
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 2.4e-133 480.3 598 47.0
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 3.1e-133 479.9 597 46.9
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 3.1e-133 479.9 607 45.5
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 5.3e-133 479.2 590 46.9
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 6.9e-133 478.8 591 47.0
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 6.9e-133 478.8 609 45.5
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 6.9e-133 478.8 595 47.7
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 1.2e-132 478.0 622 46.0
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 3.4e-132 476.5 585 47.2
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 4.5e-132 476.1 621 46.5
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 4.5e-132 476.1 590 47.5
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 1.3e-131 474.6 582 46.7
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 1.7e-131 474.2 574 47.2
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 1.7e-131 474.2 595 47.2
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 2.9e-131 473.4 574 48.1
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 3.8e-131 473.0 620 45.5
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 8.5e-131 471.9 602 46.5
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 1.4e-130 471.1 628 44.9
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 1.4e-130 471.1 581 47.3
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 1.9e-130 470.7 603 45.9
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 1.9e-130 470.7 571 48.0
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 2.5e-130 470.3 593 46.9
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 2.5e-130 470.3 579 47.2
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 4.2e-130 469.5 596 45.8
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 4.2e-130 469.5 583 47.2
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 5.5e-130 469.2 588 45.9
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 5.5e-130 469.2 585 46.2
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 7.2e-130 468.8 584 47.4
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 7.2e-130 468.8 587 46.7
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 9.4e-130 468.4 594 46.1
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 9.4e-130 468.4 578 47.8
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 9.4e-130 468.4 593 47.9
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 1.2e-129 468.0 591 47.0
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 1.6e-129 467.6 595 46.6
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 2.1e-129 467.2 571 47.8
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 3.6e-129 466.5 624 44.9
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 3.6e-129 466.5 596 45.6
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 6.1e-129 465.7 587 47.9
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 6.1e-129 465.7 613 44.7
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 7.9e-129 465.3 612 44.4
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 1.8e-128 464.2 599 45.9
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.8e-128 464.2 622 45.3
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 5.1e-128 462.6 579 46.3
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 6.7e-128 462.2 589 45.7
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 8.8e-128 461.8 602 45.3
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 8.8e-128 461.8 608 45.2
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 8.8e-128 461.8 608 45.2
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 2.5e-127 460.3 589 47.0
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 3.3e-127 459.9 596 44.8
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 3.3e-127 459.9 622 44.2
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 4.3e-127 459.5 623 45.4
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 4.3e-127 459.5 608 45.6
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 4.3e-127 459.5 574 48.1
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 5.7e-127 459.1 606 45.4
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 9.7e-127 458.4 591 46.4
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 1.3e-126 458.0 582 45.7
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 2.8e-126 456.8 580 44.8
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 3.7e-126 456.4 594 45.3
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 4.8e-126 456.1 639 43.3
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 1.4e-125 454.5 574 45.5
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 2.4e-125 453.8 598 44.8
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 2.4e-125 453.8 591 45.3
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 3.1e-125 453.4 578 46.7
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 3.1e-125 453.4 571 47.5
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 1.3e-123 448.0 601 45.3
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 1.7e-123 447.6 584 45.2
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 1.7e-123 447.6 603 45.6
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 3.8e-123 446.4 610 44.6
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 3.2e-122 443.4 576 45.8
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 4.7e-121 439.5 614 43.8
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 6.1e-121 439.1 610 44.4
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.8e-120 437.6 620 44.2
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 3.9e-120 436.4 616 43.3
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 5.1e-120 436.0 586 44.4
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 5.1e-120 436.0 637 42.7
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 2.6e-116 423.7 587 44.1
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 1.3e-115 421.4 588 43.5
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 3.8e-115 419.9 593 44.0
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 8.0e-113 412.1 602 42.7
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 9.7e-111 405.2 584 42.8
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 1.3e-110 404.8 584 43.0
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 2.8e-110 403.7 616 41.1
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.8e-110 403.7 456 51.3
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 4.8e-110 402.9 553 43.0
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 1.8e-109 401.0 610 41.1
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 2.5e-106 390.6 579 42.0
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 3.2e-106 390.2 612 41.2
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 5.5e-106 389.4 590 42.2
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 7.2e-106 389.0 466 46.1
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 3.4e-103 380.2 611 39.4
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.7e-99 367.9 531 43.1
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 2.5e-98 364.0 593 41.3
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 3.0e-96 357.1 464 45.9
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 4.1e-93 346.7 501 42.7
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 4.2e-90 336.7 610 41.0
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 2.7e-84 317.4 381 49.1
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.3e-78 298.5 485 41.4
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 9.2e-77 292.4 593 35.1
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 4.3e-74 283.5 258 57.8
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 3.0e-67 260.8 365 44.4
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 3.6e-65 253.8 283 53.4
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 8.1e-65 252.7 309 46.6
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 2.2e-62 244.6 390 39.5
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 1.2e-60 238.8 522 33.3
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 2.4e-53 214.5 358 40.8
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 5.1e-51 206.8 356 40.2
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 8.7e-51 206.1 231 46.8
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 1.6e-49 201.8 387 37.5
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 3.4e-47 194.1 123 72.4
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 3.8e-46 190.7 572 28.8
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 3.9e-43 180.6 287 40.8
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 5.8e-39 166.8 168 56.5
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 7.1e-37 159.8 141 59.6
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.9e-34 151.8 140 60.0
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 3.3e-34 151.0 159 55.3
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 4.9e-30 137.1 105 63.8
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 8.4e-30 136.3 118 58.5
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 9.3e-29 132.9 130 53.8
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 2.4e-24 118.2 217 35.0
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.6e-23 114.8 217 35.5
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 5.8e-23 113.6 87 66.7
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 1.3e-22 112.5 87 66.7
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 2.2e-22 111.7 215 34.9
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.1e-20 105.1 128 50.0
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 4.6e-20 104.0 215 36.3
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 5.1e-19 100.5 178 35.4
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 1.5e-18 99.0 65 69.2
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 7.4e-18 96.7 163 36.8
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 9.7e-18 96.3 115 50.4
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 2.2e-17 95.1 74 67.6
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 8.2e-17 93.2 68 60.3
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 2.2e-14 85.1 171 33.3
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 1.9e-13 82.0 102 45.1
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 9.4e-13 79.7 55 67.3
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 9.4e-13 79.7 149 35.6
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.5e-10 72.4 152 32.9
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 3.7e-09 67.8 47 68.1
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 3.1e-08 64.7 131 37.4
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 4.1e-08 64.3 95 41.1
Mapoly0118s0038 Marchantia polymorpha HOM05D004142 ORTHO05D254901 5.3e-08 63.9 272 26.5
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 7.7e-07 60.1 163 28.8


User provided reference genes

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