Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 0.0e+00 3431.0 2321 100.0
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 1.5e-134 486.1 1035 35.0
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 2.5e-121 442.2 840 37.5
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 1.1e-113 416.8 756 35.3
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 4.8e-109 401.4 1072 30.4
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 4.1e-108 398.3 929 32.6
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.6e-107 396.4 516 43.4
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 4.5e-107 394.8 511 43.4
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 1.5e-105 389.8 746 35.7
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 2.5e-105 389.0 743 35.8
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 9.4e-105 387.1 725 36.0
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 2.7e-104 385.6 500 43.4
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 3.6e-104 385.2 749 35.6
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 6.1e-104 384.4 497 41.6
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 1.4e-103 383.3 885 32.2
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 1.8e-103 382.9 912 32.3
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 4.0e-103 381.7 515 42.7
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 4.0e-103 381.7 727 34.8
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 1.5e-102 379.8 505 43.8
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 3.4e-102 378.6 507 42.0
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 4.4e-102 378.3 499 42.1
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 4.4e-102 378.3 726 34.6
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 5.7e-102 377.9 757 34.7
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 9.8e-102 377.1 755 33.8
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.7e-101 376.3 927 32.3
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 1.7e-101 376.3 930 31.3
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 2.2e-101 375.9 1091 29.9
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 2.8e-101 375.6 740 34.7
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 8.3e-101 374.0 865 32.1
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 1.1e-100 373.6 498 41.6
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 1.1e-100 373.6 939 31.6
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 1.4e-100 373.2 870 31.8
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 1.8e-100 372.9 501 40.7
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 5.4e-100 371.3 773 34.3
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 5.4e-100 371.3 740 33.9
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 7.0e-100 370.9 862 31.9
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 7.0e-100 370.9 909 32.8
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 7.0e-100 370.9 740 33.9
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 1.2e-99 370.2 501 42.3
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 1.2e-99 370.2 1086 30.6
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 2.0e-99 369.4 626 37.1
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 2.0e-99 369.4 544 39.9
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 3.5e-99 368.6 503 40.8
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 5.9e-99 367.9 463 42.8
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 7.7e-99 367.5 499 41.1
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 1.3e-98 366.7 907 30.7
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 1.3e-98 366.7 499 42.1
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 1.7e-98 366.3 644 35.6
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 2.3e-98 365.9 860 32.0
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 2.9e-98 365.5 500 41.2
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 3.8e-98 365.2 503 41.2
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 5.0e-98 364.8 721 35.5
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 8.6e-98 364.0 693 34.9
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 8.6e-98 364.0 698 33.4
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 1.1e-97 363.6 503 41.0
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 1.1e-97 363.6 897 31.8
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 1.5e-97 363.2 500 41.2
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 1.9e-97 362.8 503 40.6
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 2.5e-97 362.5 503 40.8
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 2.5e-97 362.5 831 31.5
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 3.3e-97 362.1 646 35.8
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 5.5e-97 361.3 498 41.8
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 7.2e-97 360.9 502 40.4
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 9.5e-97 360.5 503 40.2
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 1.2e-96 360.1 725 34.2
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 1.6e-96 359.8 511 40.5
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 1.6e-96 359.8 463 43.6
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 1.6e-96 359.8 498 42.0
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 2.1e-96 359.4 640 35.2
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 4.7e-96 358.2 940 31.6
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 1.0e-95 357.1 498 40.0
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 1.4e-95 356.7 847 32.0
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 2.3e-95 355.9 591 37.6
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 2.3e-95 355.9 502 39.8
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 5.2e-95 354.8 898 30.0
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 1.5e-94 353.2 859 32.5
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 1.5e-94 353.2 748 33.4
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 1.5e-94 353.2 507 40.6
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 7.5e-94 350.9 529 39.1
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 9.8e-94 350.5 499 40.7
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 1.7e-93 349.7 483 42.0
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 2.8e-93 349.0 937 30.4
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 4.1e-92 345.1 405 45.2
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 5.4e-92 344.7 432 46.1
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 7.0e-92 344.4 877 31.6
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 4.5e-91 341.7 499 40.7
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 1.9e-89 336.3 499 39.3
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 4.3e-89 335.1 937 29.1
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 5.6e-89 334.7 492 40.0
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 9.5e-89 334.0 372 47.0
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 1.8e-87 329.7 507 37.5
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 1.9e-84 319.7 503 37.2
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.6e-83 316.6 290 56.2
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 2.7e-83 315.8 440 40.2
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 1.7e-82 313.2 353 45.6
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 9.8e-78 297.4 663 32.4
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 4.1e-76 292.0 627 31.9
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.5e-70 273.5 748 30.2
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.4e-68 266.9 515 34.4
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 1.3e-66 260.4 364 40.7
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 3.5e-59 235.7 745 28.1
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 2.3e-58 233.0 521 31.3
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 2.7e-51 209.5 910 24.8
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 1.0e-50 207.6 261 43.3
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-50 207.2 794 26.6
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 2.8e-48 199.5 233 45.1
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 1.4e-47 197.2 308 37.7
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.3e-45 190.7 589 28.7
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 6.4e-45 188.3 361 35.5
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.0e-42 181.0 277 36.5
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.0e-42 181.0 277 36.5
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 3.9e-42 179.1 355 33.8
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 1.5e-41 177.2 190 48.9
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 2.8e-40 172.9 609 26.3
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 3.0e-34 152.9 513 26.9
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 9.6e-33 147.9 262 35.9
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 4.0e-31 142.5 219 41.1
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 2.6e-30 139.8 181 43.1
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 7.6e-30 138.3 203 39.4
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 7.1e-28 131.7 238 39.1
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.2e-27 131.0 201 38.3
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 3.3e-25 122.9 327 30.6
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.6e-24 120.6 556 24.3
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 4.8e-24 119.0 197 36.5
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 3.1e-23 116.3 627 24.6
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 1.7e-21 110.5 172 44.8
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 7.2e-20 105.1 191 37.2
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 1.7e-16 94.0 385 27.3
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.7e-16 94.0 153 35.3
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 2.4e-15 90.1 102 47.1
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 1.3e-13 84.3 184 33.7
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 2.9e-13 83.2 129 34.1
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 3.8e-13 82.8 147 33.3
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.9e-12 80.5 179 31.3
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 8.8e-10 71.6 107 35.5
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 4.1e-07 62.8 65 44.6
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 4.5e-06 59.3 59 47.5


User provided reference genes

Program Settings