Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 5.7e-63 244.2 133 100.0
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 7.0e-29 131.0 125 63.2
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 1.0e-24 117.1 110 62.7
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 5.2e-24 114.8 110 67.3
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 2.7e-20 102.4 131 55.7
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 1.8e-16 89.7 85 62.4
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 1.4e-13 80.1 115 55.7
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 1.8e-13 79.7 129 51.2
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 2.4e-13 79.3 116 54.3
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 2.4e-13 79.3 140 48.6
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 2.4e-13 79.3 68 64.7
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 7.0e-13 77.8 101 53.5
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 7.0e-13 77.8 112 54.5
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 7.0e-13 77.8 126 47.6
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 7.0e-13 77.8 116 50.9
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 7.0e-13 77.8 104 53.8
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 9.2e-13 77.4 116 50.9
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 9.2e-13 77.4 116 50.9
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 9.2e-13 77.4 142 43.7
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 9.2e-13 77.4 139 48.9
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 1.2e-12 77.0 136 50.7
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 1.2e-12 77.0 106 53.8
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 1.2e-12 77.0 116 50.9
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 1.6e-12 76.6 66 65.2
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 1.6e-12 76.6 136 50.7
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 1.6e-12 76.6 115 51.3
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 1.6e-12 76.6 116 50.0
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 2.0e-12 76.3 128 46.1
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 2.0e-12 76.3 116 50.0
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 2.0e-12 76.3 106 51.9
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 2.7e-12 75.9 97 54.6
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 2.7e-12 75.9 124 51.6
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 2.7e-12 75.9 114 51.8
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 2.7e-12 75.9 66 66.7
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 3.5e-12 75.5 120 47.5
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 3.5e-12 75.5 116 51.7
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 3.5e-12 75.5 116 51.7
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 4.5e-12 75.1 138 44.9
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 4.5e-12 75.1 106 51.9
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 4.5e-12 75.1 124 48.4
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 5.9e-12 74.7 124 50.8
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 5.9e-12 74.7 117 50.4
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 5.9e-12 74.7 117 50.4
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 5.9e-12 74.7 134 44.0
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 1.0e-11 73.9 119 47.9
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 1.0e-11 73.9 119 47.9
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 1.0e-11 73.9 119 47.9
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.0e-11 73.9 112 50.0
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 1.0e-11 73.9 112 50.0
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 1.0e-11 73.9 143 44.1
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 1.0e-11 73.9 111 50.5
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 1.3e-11 73.6 70 65.7
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 1.3e-11 73.6 113 48.7
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 1.3e-11 73.6 114 51.8
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 1.3e-11 73.6 132 47.0
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 1.3e-11 73.6 94 54.3
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 1.7e-11 73.2 126 46.8
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 1.7e-11 73.2 93 57.0
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 1.7e-11 73.2 144 45.1
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 1.7e-11 73.2 144 45.1
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 1.7e-11 73.2 132 46.2
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 2.3e-11 72.8 103 52.4
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 2.3e-11 72.8 116 50.9
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 2.3e-11 72.8 119 50.4
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 2.3e-11 72.8 115 51.3
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 2.3e-11 72.8 118 51.7
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 2.3e-11 72.8 99 51.5
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 2.9e-11 72.4 143 42.0
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 2.9e-11 72.4 143 42.0
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 2.9e-11 72.4 112 50.0
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 2.9e-11 72.4 119 49.6
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 2.9e-11 72.4 116 49.1
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 3.9e-11 72.0 125 50.4
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 3.9e-11 72.0 117 48.7
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 5.0e-11 71.6 125 48.0
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 5.0e-11 71.6 131 45.8
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 5.0e-11 71.6 70 62.9
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 5.0e-11 71.6 115 48.7
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 5.0e-11 71.6 104 53.8
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 6.6e-11 71.2 125 46.4
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 6.6e-11 71.2 102 52.0
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 6.6e-11 71.2 105 50.5
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 6.6e-11 71.2 113 49.6
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 8.6e-11 70.9 122 46.7
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 8.6e-11 70.9 113 51.3
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.1e-10 70.5 112 49.1
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.5e-10 70.1 111 49.5
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 1.5e-10 70.1 111 49.5
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 1.5e-10 70.1 105 49.5
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 1.5e-10 70.1 123 49.6
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 1.5e-10 70.1 123 49.6
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 1.9e-10 69.7 103 51.5
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 1.9e-10 69.7 112 51.8
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 1.9e-10 69.7 115 44.3
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 1.9e-10 69.7 119 48.7
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 2.5e-10 69.3 112 50.0
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 3.3e-10 68.9 117 47.9
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 3.3e-10 68.9 66 62.1
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 3.3e-10 68.9 115 45.2
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 4.3e-10 68.6 66 59.1
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 4.3e-10 68.6 66 62.1
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 5.6e-10 68.2 118 50.0
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 7.3e-10 67.8 111 48.6
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 7.3e-10 67.8 120 50.8
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 7.3e-10 67.8 111 50.5
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 9.5e-10 67.4 104 51.9
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 9.5e-10 67.4 143 46.2
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 9.5e-10 67.4 93 50.5
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 1.2e-09 67.0 138 42.8
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 1.2e-09 67.0 132 40.2
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 1.2e-09 67.0 146 39.7
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 1.6e-09 66.6 106 47.2
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 1.6e-09 66.6 103 50.5
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 1.6e-09 66.6 103 49.5
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 2.8e-09 65.9 65 60.0
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 3.6e-09 65.5 114 43.9
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 3.6e-09 65.5 65 58.5
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 3.6e-09 65.5 65 58.5
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 6.1e-09 64.7 67 59.7
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 6.1e-09 64.7 66 59.1
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 8.0e-09 64.3 59 62.7
Cre01.g030050 Chlamydomonas reinhardtii HOM05D005954 ORTHO05D007347 1.0e-08 63.9 129 39.5
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 5.2e-08 61.6 106 46.2
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 5.2e-08 61.6 66 56.1
PRCOL_00001665 Prasinoderma coloniale HOM05D005954 ORTHO05D007347 5.2e-08 61.6 126 42.9
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 1.3e-06 57.0 106 50.0
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 1.3e-06 57.0 148 40.5
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 3.7e-06 55.5 112 43.8
MCO05G068 Micromonas commoda HOM05D005954 ORTHO05D007347 3.7e-06 55.5 127 39.4


User provided reference genes

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