Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 1.8e-218 762.3 391 100.0
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 3.0e-104 382.9 392 55.1
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 4.8e-102 375.6 394 53.8
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 4.2e-90 335.9 354 53.1
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 9.4e-90 334.7 354 53.1
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 9.4e-90 334.7 354 53.1
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 2.1e-89 333.6 402 48.5
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 2.7e-89 333.2 395 50.4
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 2.3e-88 330.1 386 50.8
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 1.1e-87 327.8 354 52.0
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 2.0e-87 327.0 357 52.9
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 2.0e-87 327.0 398 47.7
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 4.3e-87 325.9 358 49.4
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 5.7e-87 325.5 393 49.1
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 7.4e-87 325.1 354 52.3
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 9.7e-87 324.7 394 50.5
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 1.7e-86 323.9 399 48.4
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 2.8e-86 323.2 359 52.4
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 6.3e-86 322.0 396 48.0
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 6.3e-86 322.0 395 49.4
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 1.1e-85 321.2 382 49.2
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 1.4e-85 320.9 392 49.2
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 1.8e-85 320.5 352 51.4
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 2.4e-85 320.1 344 50.6
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 3.1e-85 319.7 395 47.8
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 5.3e-85 318.9 408 46.6
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 6.9e-85 318.5 396 46.5
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 9.1e-85 318.2 393 49.1
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 1.2e-84 317.8 395 48.6
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.5e-84 317.4 392 49.2
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 1.5e-84 317.4 393 50.1
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 2.0e-84 317.0 393 49.1
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 2.0e-84 317.0 390 49.2
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 2.0e-84 317.0 393 47.8
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 2.6e-84 316.6 393 47.1
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 1.0e-83 314.7 363 50.7
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.0e-83 314.7 400 47.8
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 1.3e-83 314.3 400 48.2
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 1.3e-83 314.3 349 51.3
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.2e-83 313.5 403 48.9
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 2.2e-83 313.5 409 47.4
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.9e-83 313.2 402 47.8
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 2.9e-83 313.2 400 47.8
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 5.0e-83 312.4 393 48.1
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 6.5e-83 312.0 399 46.6
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 8.5e-83 311.6 409 47.7
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 1.1e-82 311.2 394 47.2
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 1.9e-82 310.5 401 46.6
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 5.5e-82 308.9 379 48.8
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 7.2e-82 308.5 397 47.9
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 7.2e-82 308.5 384 47.9
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 9.4e-82 308.1 406 45.6
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 1.6e-81 307.4 395 46.6
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 1.6e-81 307.4 393 47.8
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 1.6e-81 307.4 397 46.9
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 2.1e-81 307.0 394 46.7
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 2.1e-81 307.0 371 49.6
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 2.1e-81 307.0 386 47.2
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 2.7e-81 306.6 395 47.1
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 3.6e-81 306.2 397 47.1
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 4.7e-81 305.8 385 46.8
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 4.7e-81 305.8 397 46.6
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 4.7e-81 305.8 398 46.7
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 6.1e-81 305.4 373 49.6
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 7.9e-81 305.1 395 46.6
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 1.0e-80 304.7 386 46.9
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 1.4e-80 304.3 396 46.0
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 1.4e-80 304.3 398 46.7
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 1.4e-80 304.3 402 45.5
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 1.4e-80 304.3 406 47.0
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 2.3e-80 303.5 392 46.2
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 2.3e-80 303.5 374 47.6
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 3.0e-80 303.1 396 45.7
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 3.0e-80 303.1 400 44.8
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 3.9e-80 302.8 372 48.4
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 3.9e-80 302.8 356 51.1
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 3.9e-80 302.8 394 48.2
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 3.9e-80 302.8 399 47.1
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 5.1e-80 302.4 364 49.2
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 5.1e-80 302.4 398 47.5
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 8.8e-80 301.6 372 48.1
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 1.5e-79 300.8 393 44.8
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 1.5e-79 300.8 356 50.6
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 2.6e-79 300.1 381 46.5
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 7.4e-79 298.5 384 47.4
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 9.7e-79 298.1 381 46.2
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 2.2e-78 297.0 382 47.4
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 6.3e-78 295.4 394 44.4
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 8.2e-78 295.0 353 48.4
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 2.4e-77 293.5 397 44.8
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 3.1e-77 293.1 383 47.3
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 4.1e-77 292.7 395 45.1
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 5.3e-77 292.4 398 44.7
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 1.2e-76 291.2 384 46.4
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 1.2e-76 291.2 357 47.6
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 2.0e-76 290.4 371 46.6
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 2.6e-76 290.0 372 48.7
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 4.5e-76 289.3 368 49.2
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 4.5e-76 289.3 366 48.1
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 1.0e-75 288.1 350 48.6
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 3.2e-74 283.1 393 43.3
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 4.2e-74 282.7 398 44.7
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 5.5e-74 282.3 312 52.2
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 1.6e-73 280.8 356 45.8
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 6.1e-73 278.9 386 45.3
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 1.8e-72 277.3 384 44.8
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 5.2e-72 275.8 392 44.1
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 4.4e-71 272.7 360 45.3
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 5.7e-71 272.3 362 45.3
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 7.0e-69 265.4 333 47.4
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 3.2e-66 256.5 452 38.9
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 4.0e-64 249.6 297 49.5
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 2.6e-63 246.9 202 59.9
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 5.5e-58 229.2 285 48.1
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 5.5e-58 229.2 285 48.1
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 3.6e-57 226.5 306 48.0
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 3.0e-56 223.4 390 39.7
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 3.5e-52 209.9 308 43.5
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 2.3e-51 207.2 170 60.0
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 2.2e-46 190.7 313 41.5
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 4.9e-46 189.5 313 41.2
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 9.8e-39 165.2 263 38.8
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 7.0e-37 159.1 198 51.0
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 2.3e-35 154.1 242 42.1
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 6.2e-33 146.0 230 43.0
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 4.4e-31 139.8 219 42.0
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 1.9e-29 134.4 189 43.9
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 1.8e-24 117.9 279 33.3
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 6.4e-22 109.4 108 50.9
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 7.8e-20 102.4 86 57.0
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 1.7e-14 84.7 160 43.1
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 2.2e-14 84.3 84 51.2
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 6.4e-14 82.8 95 41.1
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 8.4e-14 82.4 184 37.5
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 2.4e-13 80.9 93 47.3
Cfa026666 Carpinus fangiana HOM05D005260 ORTHO05D006390 4.6e-12 76.6 259 28.6
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 6.2e-09 66.2 268 25.0
BolC3t13905H Brassica oleracea HOM05D005260 ORTHO05D006390 1.3e-06 58.5 47 70.2
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 1.7e-06 58.2 41 61.0
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 2.9e-06 57.4 55 52.7


User provided reference genes

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