Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0043s0002 Marchantia polymorpha HOM05D007251 ORTHO05D009266 0.0e+00 1287.7 692 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 2.6e-143 513.5 557 52.6
Pp3c8_4280 Physcomitrium patens HOM05D007251 ORTHO05D009266 2.4e-125 453.8 443 57.6
CBR_g20311 Chara braunii HOM05D007251 ORTHO05D009266 3.2e-125 453.4 522 48.1
Nn8g40494 Nelumbo nucifera HOM05D007251 ORTHO05D009266 1.4e-112 411.4 536 42.5
SMO137G0044 Selaginella moellendorffii HOM05D007251 ORTHO05D009266 1.8e-112 411.0 492 45.3
ATR0580G362 Amborella trichopoda HOM05D007251 ORTHO05D009266 3.1e-112 410.2 554 42.4
TAR626G1006 Trochodendron aralioides HOM05D007251 ORTHO05D009266 1.3e-110 404.8 532 42.7
Aqoxy7G03087 Aquilegia oxysepala HOM05D007251 ORTHO05D009266 3.8e-110 403.3 543 40.9
GSVIVG01035517001 Vitis vinifera HOM05D007251 ORTHO05D009266 1.5e-106 391.3 498 43.8
CSS0035408 Camellia sinensis var. sinensis HOM05D007251 ORTHO05D009266 2.5e-106 390.6 556 40.5
Nitab4.5_0000502g0130 Nicotiana tabacum HOM05D007251 ORTHO05D009266 3.7e-105 386.7 563 40.7
Migut.E01424 Erythranthe guttata HOM05D007251 ORTHO05D009266 1.4e-104 384.8 552 39.1
Nitab4.5_0002023g0010 Nicotiana tabacum HOM05D007251 ORTHO05D009266 2.0e-103 380.9 563 40.7
Sopen08g022660 Solanum pennellii HOM05D007251 ORTHO05D009266 2.0e-103 380.9 547 41.5
Potri.006G273400 Populus trichocarpa HOM05D007251 ORTHO05D009266 2.6e-103 380.6 549 42.3
Dinv18148 Davidia involucrata HOM05D007251 ORTHO05D009266 2.2e-102 377.5 537 41.7
CAN.G908.8 Capsicum annuum HOM05D007251 ORTHO05D009266 2.9e-102 377.1 567 40.4
Solyc08g069010.4 Solanum lycopersicum HOM05D007251 ORTHO05D009266 3.8e-102 376.7 547 41.1
SalBow8G5364 Salvia bowleyana HOM05D007251 ORTHO05D009266 1.1e-101 375.2 550 38.2
CiPaw.08G020100 Carya illinoinensis HOM05D007251 ORTHO05D009266 1.4e-101 374.8 536 40.1
SalBow8G3910 Salvia bowleyana HOM05D007251 ORTHO05D009266 5.5e-101 372.9 550 38.2
Prupe.1G459800 Prunus persica HOM05D007251 ORTHO05D009266 9.4e-101 372.1 536 40.1
PSO063G0176 Papaver somniferum HOM05D007251 ORTHO05D009266 1.2e-100 371.7 537 39.3
Ah.11g043880 Amaranthus hybridus HOM05D007251 ORTHO05D009266 3.6e-100 370.2 546 39.7
MBI16_g41809_MAGBIO Magnolia biondii HOM05D007251 ORTHO05D009266 3.6e-100 370.2 547 39.3
Duzib168G1420 Durio zibethinus HOM05D007251 ORTHO05D009266 7.9e-100 369.0 489 40.9
QL12p025168 Quercus lobata HOM05D007251 ORTHO05D009266 1.4e-99 368.2 536 39.7
BcaB05g21499 Brassica carinata HOM05D007251 ORTHO05D009266 2.3e-99 367.5 507 39.6
TWI34G2010 Tripterygium wilfordii HOM05D007251 ORTHO05D009266 2.3e-99 367.5 521 40.1
BcaC03g13325 Brassica carinata HOM05D007251 ORTHO05D009266 3.9e-99 366.7 507 39.3
BolC2t06419H Brassica oleracea HOM05D007251 ORTHO05D009266 1.1e-98 365.2 534 38.2
BraA02t05043Z Brassica rapa HOM05D007251 ORTHO05D009266 1.1e-98 365.2 534 38.4
Sp6g32780 Schrenkiella parvula HOM05D007251 ORTHO05D009266 1.5e-98 364.8 539 38.0
C02p04590 Brassica napus HOM05D007251 ORTHO05D009266 2.0e-98 364.4 534 38.2
Eucgr.C02018 Eucalyptus grandis HOM05D007251 ORTHO05D009266 2.0e-98 364.4 546 43.6
RcHm_v2.0_Chr6g0305021 Rosa chinensis HOM05D007251 ORTHO05D009266 3.3e-98 363.6 554 40.8
FvH4_2g36670 Fragaria vesca HOM05D007251 ORTHO05D009266 4.4e-98 363.2 547 38.8
Zm00001eb099850 Zea mays HOM05D007251 ORTHO05D009266 5.7e-98 362.8 537 38.9
AUR62020596 Chenopodium quinoa HOM05D007251 ORTHO05D009266 9.7e-98 362.1 546 40.5
PSO782G5553 Papaver somniferum HOM05D007251 ORTHO05D009266 9.7e-98 362.1 560 38.0
Peaxi162Scf00288g00912 Petunia axillaris HOM05D007251 ORTHO05D009266 1.7e-97 361.3 488 46.1
A02p00600 Brassica napus HOM05D007251 ORTHO05D009266 1.8e-96 357.8 534 38.0
Lj7C750G16 Lonicera japonica HOM05D007251 ORTHO05D009266 3.4e-95 353.6 500 40.6
MD08G1128000 Malus domestica HOM05D007251 ORTHO05D009266 4.5e-95 353.2 521 38.6
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 5.9e-95 352.8 547 40.4
Glyma.14G134800 Glycine max HOM05D007251 ORTHO05D009266 5.9e-95 352.8 521 40.1
FAN27G2253 Fragaria x ananassa HOM05D007251 ORTHO05D009266 1.9e-93 347.8 569 39.0
AUR62009072 Chenopodium quinoa HOM05D007251 ORTHO05D009266 2.5e-93 347.4 505 40.0
Os09g0431600 Oryza sativa ssp. japonica HOM05D007251 ORTHO05D009266 2.5e-93 347.4 533 38.1
Hund03293 Selenicereus undatus HOM05D007251 ORTHO05D009266 2.1e-92 344.4 515 40.2
Sabra06G0211800 Salix brachista HOM05D007251 ORTHO05D009266 3.6e-92 343.6 587 35.6
FAN15G3149 Fragaria x ananassa HOM05D007251 ORTHO05D009266 6.1e-92 342.8 561 39.4
Gohir.A05G064200 Gossypium hirsutum HOM05D007251 ORTHO05D009266 6.1e-92 342.8 597 35.0
SGA_v2.0_scaffold121G33030 Striga asiatica HOM05D007251 ORTHO05D009266 6.1e-92 342.8 535 38.3
Aa31LG3G16450 Aethionema arabicum HOM05D007251 ORTHO05D009266 3.0e-91 340.5 553 35.8
Cpa.g.sc23.18 Carica papaya HOM05D007251 ORTHO05D009266 3.3e-90 337.0 566 40.6
Phvul.001G059500 Phaseolus vulgaris HOM05D007251 ORTHO05D009266 2.4e-88 330.9 526 35.9
Lalb_Chr24g0402511 Lupinus albus HOM05D007251 ORTHO05D009266 2.6e-87 327.4 517 36.2
Thecc.09G007500 Theobroma cacao HOM05D007251 ORTHO05D009266 1.0e-86 325.5 548 34.7
Gorai.009G067600 Gossypium raimondii HOM05D007251 ORTHO05D009266 1.7e-86 324.7 556 34.9
arahy.Tifrunner.gnm1.ann1.ULFK5V Arachis hypogaea HOM05D007251 ORTHO05D009266 2.2e-86 324.3 520 36.9
COL.COLO4_19030 Corchorus olitorius HOM05D007251 ORTHO05D009266 2.2e-86 324.3 464 38.8
Thhalv10013072m.g Eutrema salsugineum HOM05D007251 ORTHO05D009266 8.5e-86 322.4 539 35.4
CARHR202630 Cardamine hirsuta HOM05D007251 ORTHO05D009266 1.1e-85 322.0 515 36.3
AT5G10690 Arabidopsis thaliana HOM05D007251 ORTHO05D009266 2.5e-85 320.9 556 35.1
arahy.Tifrunner.gnm1.ann1.5WJ9LU Arachis hypogaea HOM05D007251 ORTHO05D009266 4.2e-85 320.1 519 36.0
Gohir.D05G066800 Gossypium hirsutum HOM05D007251 ORTHO05D009266 7.2e-85 319.3 556 34.4
VMungo0647G2138 Vigna mungo HOM05D007251 ORTHO05D009266 2.1e-84 317.8 525 35.4
DCAR_003023 Daucus carota HOM05D007251 ORTHO05D009266 1.0e-83 315.5 543 34.1
MELO3C003624.2 Cucumis melo HOM05D007251 ORTHO05D009266 5.2e-83 313.2 522 36.2
CDE05G1868 Ceratophyllum demersum HOM05D007251 ORTHO05D009266 6.7e-83 312.8 484 37.6
Glyma.17G197900 Glycine max HOM05D007251 ORTHO05D009266 6.7e-83 312.8 497 37.2
TPR.G12085 Trifolium pratense HOM05D007251 ORTHO05D009266 3.3e-82 310.5 517 34.8
EL10Ac2g03759 Beta vulgaris HOM05D007251 ORTHO05D009266 7.5e-82 309.3 526 36.5
Psat6g032880 Pisum sativum HOM05D007251 ORTHO05D009266 1.3e-81 308.5 515 35.5
Medtr1g009650 Medicago truncatula HOM05D007251 ORTHO05D009266 7.0e-80 302.8 515 34.8
ClCG05G017600 Citrullus lanatus HOM05D007251 ORTHO05D009266 4.5e-79 300.1 506 35.0
CANSAT56G3637 Cannabis sativa HOM05D007251 ORTHO05D009266 5.2e-75 286.6 484 34.7
Manes.16G135400 Manihot esculenta HOM05D007251 ORTHO05D009266 4.1e-72 276.9 405 40.5
Ca_12854_v3 Cicer arietinum L. HOM05D007251 ORTHO05D009266 5.4e-72 276.6 564 31.4
Atru.BG.4.p Acer truncatum HOM05D007251 ORTHO05D009266 1.2e-71 275.4 489 36.8
AL6G21210 Arabidopsis lyrata HOM05D007251 ORTHO05D009266 1.5e-66 258.5 417 37.2
Haze_21751 Corylus avellana HOM05D007251 ORTHO05D009266 2.8e-65 254.2 530 31.7
Sed0014514 Sechium edule HOM05D007251 ORTHO05D009266 9.5e-61 239.2 359 40.4
CsaV3_3G047120 Cucumis sativus L. HOM05D007251 ORTHO05D009266 2.6e-58 231.1 358 38.8
Carub.0006s0915 Capsella rubella HOM05D007251 ORTHO05D009266 2.4e-56 224.6 380 34.7
Cfa013277 Carpinus fangiana HOM05D007251 ORTHO05D009266 3.7e-49 200.7 340 36.8
Oeu019776.1 Olea europaea HOM05D007251 ORTHO05D009266 2.1e-36 158.3 196 42.9
Ciclev10010499m.g Citrus clementina HOM05D007251 ORTHO05D009266 2.4e-35 154.8 363 30.0
Sabra06G0212100 Salix brachista HOM05D007251 ORTHO05D009266 2.5e-29 134.8 201 35.8
Actinidia06425 Actinidia chinensis HOM05D007251 ORTHO05D009266 4.3e-29 134.0 208 39.4
Potri.006G274133 Populus trichocarpa HOM05D007251 ORTHO05D009266 2.2e-25 121.7 153 39.9
CDE05G2179 Ceratophyllum demersum HOM05D007251 ORTHO05D009266 3.8e-25 120.9 172 41.3
Cfa023054 Carpinus fangiana HOM05D007251 ORTHO05D009266 4.6e-23 114.0 153 38.6
Actinidia22253 Actinidia chinensis HOM05D007251 ORTHO05D009266 7.9e-15 86.7 91 47.3
CiPaw.01G062100 Carya illinoinensis HOM05D007251 ORTHO05D009266 3.3e-13 81.3 155 51.6
AagrBONN_evm.TU.Sc2ySwM_117.3667 Anthoceros agrestis HOM05D007251 ORTHO05D009266 2.8e-12 78.2 214 30.8
Oeu019281.1 Olea europaea HOM05D007251 ORTHO05D009266 6.2e-12 77.0 80 42.5
GSVIVG01025536001 Vitis vinifera HOM05D000855 ORTHO05D008530 3.4e-10 71.2 296 26.7
SMO270G0123 Selaginella moellendorffii HOM05D000001 ORTHO05D376091 4.5e-10 70.9 158 27.8
ATR0807G010 Amborella trichopoda HOM05D006556 ORTHO05D008146 3.8e-09 67.8 151 29.8
CiPaw.09G148500 Carya illinoinensis HOM05D006556 ORTHO05D008146 3.8e-09 67.8 149 29.5
Actinidia22254 Actinidia chinensis HOM05D007251 ORTHO05D009266 4.9e-09 67.4 94 39.4
Ca_24987_v3 Cicer arietinum L. HOM05D006556 ORTHO05D008146 8.4e-09 66.6 174 28.7
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 1.9e-08 65.5 201 27.4
Dinv35708 Davidia involucrata HOM05D000855 ORTHO05D008530 2.4e-08 65.1 229 26.2
AagrBONN_evm.TU.Sc2ySwM_362.2053 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.2e-08 64.7 326 23.0
Hma1.2p1_0631F.1_g192380 Hydrangea macrophylla HOM05D006556 ORTHO05D008146 3.2e-08 64.7 174 27.6
Hma1.2p1_0631F.1_g192390 Hydrangea macrophylla HOM05D006556 ORTHO05D008146 3.2e-08 64.7 174 27.6
Hma1.2p1_0631F.1_g192404 Hydrangea macrophylla HOM05D006556 ORTHO05D008146 3.2e-08 64.7 174 27.6
DCAR_014305 Daucus carota HOM05D000534 ORTHO05D008146 7.1e-08 63.5 185 25.4
MSTRG.19138 Avicennia marina HOM05D000855 ORTHO05D008530 1.2e-07 62.8 215 27.4
DCAR_019601 Daucus carota HOM05D002453 ORTHO05D008746 1.2e-07 62.8 173 28.9
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 3.5e-07 61.2 218 26.1
TPR.G37558 Trifolium pratense HOM05D007552 ORTHO05D009397 6.0e-07 60.5 149 29.5
FAN10G2028 Fragaria x ananassa HOM05D006556 ORTHO05D008146 7.9e-07 60.1 185 25.9
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 7.9e-07 60.1 221 26.7
Prupe.4G268300 Prunus persica HOM05D000001 ORTHO05D000003 7.9e-07 60.1 310 21.9
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 7.9e-07 60.1 221 26.2
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 1.0e-06 59.7 221 27.1
TWI39G0515 Tripterygium wilfordii HOM05D006156 ORTHO05D007699 1.0e-06 59.7 155 27.7
RcHm_v2.0_Chr7g0231531 Rosa chinensis HOM05D001779 ORTHO05D001753 1.8e-06 58.9 254 26.4
Nn4g23179 Nelumbo nucifera HOM05D000001 ORTHO05D000003 2.3e-06 58.5 289 23.2
TAR381G1502 Trochodendron aralioides HOM05D000001 ORTHO05D000003 3.0e-06 58.2 147 26.5
Eucgr.G02500 Eucalyptus grandis HOM05D000001 ORTHO05D000003 6.7e-06 57.0 293 24.9
Phvul.002G084700 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 8.7e-06 56.6 290 22.8
VMungo1215G0257 Vigna mungo HOM05D000001 ORTHO05D000003 8.7e-06 56.6 290 22.8


User provided reference genes

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