Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0042s0091 Marchantia polymorpha HOM05D007852 ORTHO05D009916 1.1e-101 373.2 181 100.0
Mapoly0039s0106 Marchantia polymorpha HOM05D007852 ORTHO05D009916 8.9e-43 177.6 154 54.5
AagrBONN_evm.TU.Sc2ySwM_344.4223 Anthoceros agrestis HOM05D007852 ORTHO05D009916 4.1e-16 89.0 105 41.9
Pp3c20_15620 Physcomitrium patens HOM05D007852 ORTHO05D009916 2.8e-12 76.3 135 31.1
Potri.004G062700 Populus trichocarpa HOM05D007852 ORTHO05D009916 4.4e-10 68.9 69 40.6
BcaC01g00138 Brassica carinata HOM05D007852 ORTHO05D009916 4.9e-09 65.5 63 47.6
Sp1g25680 Schrenkiella parvula HOM05D007852 ORTHO05D009916 8.4e-09 64.7 63 46.0
Gohir.D06G206100 Gossypium hirsutum HOM05D007852 ORTHO05D009916 1.9e-08 63.5 52 48.1
Gorai.010G240500 Gossypium raimondii HOM05D007852 ORTHO05D009916 1.9e-08 63.5 52 48.1
BcaB03g12179 Brassica carinata HOM05D007852 ORTHO05D009916 2.4e-08 63.2 63 46.0
BcaC05g26993 Brassica carinata HOM05D007852 ORTHO05D009916 2.4e-08 63.2 63 46.0
C03p76190 Brassica napus HOM05D007852 ORTHO05D009916 2.4e-08 63.2 61 47.5
C05p28530 Brassica napus HOM05D007852 ORTHO05D009916 2.4e-08 63.2 63 46.0
BolC5t31577H Brassica oleracea HOM05D007852 ORTHO05D009916 2.4e-08 63.2 63 46.0
Lsat_1_v5_gn_4_49360 Lactuca sativa HOM05D007852 ORTHO05D009916 2.4e-08 63.2 44 56.8
BcaC06g35465 Brassica carinata HOM05D007852 ORTHO05D009916 3.2e-08 62.8 60 45.0
FAN21G2050 Fragaria x ananassa HOM05D007852 ORTHO05D009916 3.2e-08 62.8 61 42.6
A08p24840 Brassica napus HOM05D007852 ORTHO05D009916 4.2e-08 62.4 63 46.0
BraA08t34439Z Brassica rapa HOM05D007852 ORTHO05D009916 4.2e-08 62.4 63 46.0
PGSC0003DMG400028458 Solanum tuberosum HOM05D007852 ORTHO05D009916 4.2e-08 62.4 47 53.2
TWI09G0702 Tripterygium wilfordii HOM05D007852 ORTHO05D009916 4.2e-08 62.4 47 48.9
Hma1.2p1_1749F.1_g300710 Hydrangea macrophylla HOM05D007852 ORTHO05D009916 5.4e-08 62.0 47 51.1
Carub.0001s2803 Capsella rubella HOM05D007852 ORTHO05D009916 7.1e-08 61.6 63 44.4
Nitab4.5_0008572g0040 Nicotiana tabacum HOM05D007852 ORTHO05D009916 7.1e-08 61.6 50 50.0
Zm00001eb094410 Zea mays HOM05D007852 ORTHO05D009916 7.1e-08 61.6 54 46.3
Gohir.A06G198800 Gossypium hirsutum HOM05D007852 ORTHO05D009916 9.3e-08 61.2 47 51.1
Solyc02g071940.1 Solanum lycopersicum HOM05D007852 ORTHO05D009916 9.3e-08 61.2 47 53.2
BolC3t19875H Brassica oleracea HOM05D007852 ORTHO05D009916 1.2e-07 60.8 61 45.9
FAN16G0821 Fragaria x ananassa HOM05D007852 ORTHO05D009916 1.2e-07 60.8 61 41.0
QL05p050225 Quercus lobata HOM05D007852 ORTHO05D009916 1.2e-07 60.8 46 52.2
C07p15740 Brassica napus HOM05D007852 ORTHO05D009916 1.6e-07 60.5 58 44.8
BolC7t42066H Brassica oleracea HOM05D007852 ORTHO05D009916 1.6e-07 60.5 58 44.8
COL.COLO4_31211 Corchorus olitorius HOM05D007852 ORTHO05D009916 1.6e-07 60.5 47 48.9
Ciclev10018381m.g Citrus clementina HOM05D007852 ORTHO05D009916 2.1e-07 60.1 47 48.9
MSTRG.16177 Avicennia marina HOM05D007852 ORTHO05D009916 2.7e-07 59.7 90 37.8
Phvul.002G242100 Phaseolus vulgaris HOM05D007852 ORTHO05D009916 2.7e-07 59.7 61 42.6
A07p10220 Brassica napus HOM05D007852 ORTHO05D009916 3.5e-07 59.3 46 52.2
Thecc.06G163700 Theobroma cacao HOM05D007852 ORTHO05D009916 3.5e-07 59.3 47 46.8
Migut.M00995 Erythranthe guttata HOM05D007852 ORTHO05D009916 4.6e-07 58.9 57 47.4
Glyma.08G120000 Glycine max HOM05D007852 ORTHO05D009916 6.0e-07 58.5 46 50.0
Os01g0729500 Oryza sativa ssp. japonica HOM05D007852 ORTHO05D009916 6.0e-07 58.5 55 47.3
BraA07t28818Z Brassica rapa HOM05D007852 ORTHO05D009916 7.8e-07 58.2 44 54.5
Sopen02g020930 Solanum pennellii HOM05D007852 ORTHO05D009916 7.8e-07 58.2 47 51.1
Manes.16G043700 Manihot esculenta HOM05D007852 ORTHO05D009916 1.0e-06 57.8 42 57.1
Sed0006029 Sechium edule HOM05D007852 ORTHO05D009916 1.0e-06 57.8 47 46.8
AL1G43620 Arabidopsis lyrata HOM05D007852 ORTHO05D009916 1.3e-06 57.4 44 52.3
CARHR029160 Cardamine hirsuta HOM05D007852 ORTHO05D009916 1.3e-06 57.4 44 52.3
Dinv12735 Davidia involucrata HOM05D007852 ORTHO05D009916 1.3e-06 57.4 44 50.0
Nn3g21053 Nelumbo nucifera HOM05D007852 ORTHO05D009916 1.3e-06 57.4 66 34.8
Atru.chr10.1525 Acer truncatum HOM05D007852 ORTHO05D009916 1.7e-06 57.0 42 54.8
Oeu001067.1 Olea europaea HOM05D007852 ORTHO05D009916 1.7e-06 57.0 44 52.3
CiPaw.09G136400 Carya illinoinensis HOM05D007852 ORTHO05D009916 2.3e-06 56.6 54 40.7
RcHm_v2.0_Chr5g0011991 Rosa chinensis HOM05D007852 ORTHO05D009916 2.3e-06 56.6 47 44.7
Thhalv10009162m.g Eutrema salsugineum HOM05D007852 ORTHO05D009916 3.0e-06 56.2 45 51.1
Prupe.4G068400 Prunus persica HOM05D007852 ORTHO05D009916 3.0e-06 56.2 47 42.6
Sabra04G0041600 Salix brachista HOM05D007852 ORTHO05D009916 3.0e-06 56.2 45 46.7
MELO3C017616.2 Cucumis melo HOM05D007852 ORTHO05D009916 3.9e-06 55.8 47 44.7
Medtr8g087660 Medicago truncatula HOM05D007852 ORTHO05D009916 3.9e-06 55.8 47 48.9
Hund21452 Selenicereus undatus HOM05D007852 ORTHO05D009916 3.9e-06 55.8 45 46.7
Ciclev10002903m.g Citrus clementina HOM05D007852 ORTHO05D009916 6.6e-06 55.1 47 44.7
SGA_v2.0_scaffold1G00101 Striga asiatica HOM05D007852 ORTHO05D009916 6.6e-06 55.1 44 47.7
Duzib235G0245 Durio zibethinus HOM05D007852 ORTHO05D009916 8.7e-06 54.7 44 50.0


User provided reference genes

Program Settings