Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 6.0e-306 1053.5 595 100.0
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 6.6e-95 352.4 543 39.6
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 5.2e-84 316.2 509 38.7
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 1.9e-65 254.6 508 34.6
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.8e-60 238.0 422 38.4
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 4.5e-51 206.8 549 29.9
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.1e-49 202.2 344 34.9
Pp3c11_11580 Physcomitrium patens HOM05D003578 ORTHO05D004021 9.7e-46 189.1 462 30.7
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 8.2e-45 186.0 467 30.6
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 1.4e-44 185.3 486 30.9
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 1.4e-44 185.3 435 30.8
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 1.8e-44 184.9 435 30.8
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 4.1e-44 183.7 497 30.8
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 1.5e-43 181.8 470 31.7
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.0e-42 179.1 474 28.9
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.2e-42 177.9 474 29.1
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.8e-42 177.2 459 29.4
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 8.5e-42 176.0 424 30.0
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.1e-41 175.6 501 27.5
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 4.2e-41 173.7 442 28.3
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 7.2e-41 172.9 434 30.0
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 1.2e-40 172.2 491 28.5
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.2e-40 172.2 462 29.2
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.6e-40 171.8 498 29.7
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 1.6e-40 171.8 496 28.4
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 2.1e-40 171.4 460 29.6
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 2.7e-40 171.0 443 28.9
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 2.7e-40 171.0 478 29.3
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 2.7e-40 171.0 435 29.0
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 4.6e-40 170.2 442 29.4
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 6.1e-40 169.9 439 28.2
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 7.9e-40 169.5 450 29.6
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 1.4e-39 168.7 435 29.7
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 2.3e-39 167.9 515 28.2
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 6.7e-39 166.4 490 29.4
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 2.0e-38 164.9 465 30.5
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 7.4e-38 162.9 447 30.0
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 1.3e-37 162.2 473 28.8
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 2.2e-37 161.4 480 30.4
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 2.8e-37 161.0 474 29.7
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 3.7e-37 160.6 437 27.5
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 8.2e-37 159.5 447 28.4
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 2.4e-36 157.9 499 27.1
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 3.1e-36 157.5 440 29.1
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 4.1e-36 157.1 483 27.1
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 6.9e-36 156.4 376 30.1
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 9.1e-36 156.0 522 27.0
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 9.1e-36 156.0 467 28.1
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 2.0e-35 154.8 496 28.6
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.6e-35 154.5 500 26.4
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 5.9e-35 153.3 454 28.2
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.3e-34 152.1 468 27.6
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 1.3e-34 152.1 424 28.8
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 2.2e-34 151.4 468 27.6
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 3.8e-34 150.6 487 27.3
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 8.5e-34 149.4 459 27.2
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 1.4e-33 148.7 485 25.8
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 3.2e-33 147.5 498 25.7
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 3.2e-33 147.5 414 27.3
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 5.5e-33 146.7 458 29.3
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 7.2e-33 146.4 444 26.4
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 7.2e-33 146.4 485 25.8
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 9.4e-33 146.0 486 28.4
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 1.2e-32 145.6 498 25.5
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.2e-32 145.6 417 28.8
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.2e-32 145.6 417 28.8
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 2.1e-32 144.8 449 26.5
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 2.7e-32 144.4 501 26.3
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 3.6e-32 144.1 508 25.2
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.7e-32 143.7 456 27.0
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 6.1e-32 143.3 508 25.2
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 7.9e-32 142.9 473 28.1
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 1.8e-31 141.7 431 26.2
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 3.0e-31 141.0 433 28.4
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 5.2e-31 140.2 474 25.5
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 6.7e-31 139.8 456 26.5
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 1.5e-30 138.7 481 25.2
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 1.5e-30 138.7 466 26.4
AagrBONN_evm.TU.Sc2ySwM_228.1577 Anthoceros agrestis HOM05D003578 ORTHO05D004021 7.4e-30 136.3 362 30.9
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 7.4e-30 136.3 478 26.2
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 1.3e-29 135.6 445 25.6
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 1.3e-29 135.6 427 24.4
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 1.7e-29 135.2 442 27.8
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 2.2e-29 134.8 495 25.3
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 3.7e-29 134.0 451 25.5
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.4e-28 132.1 425 27.3
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 1.8e-28 131.7 461 25.6
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 1.8e-28 131.7 428 26.4
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 3.1e-28 131.0 502 23.9
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 7.0e-28 129.8 460 25.4
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 9.1e-28 129.4 477 24.3
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 1.2e-27 129.0 515 24.3
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 1.6e-27 128.6 505 24.4
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.6e-27 128.6 445 25.4
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.0e-27 128.3 472 24.8
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 2.0e-27 128.3 479 25.1
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 3.5e-27 127.5 465 26.7
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 3.5e-27 127.5 464 25.9
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 4.5e-27 127.1 479 24.6
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.9e-27 126.7 495 25.3
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 7.7e-27 126.3 471 27.0
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 1.0e-26 125.9 431 27.1
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 2.2e-26 124.8 521 25.0
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 2.9e-26 124.4 481 25.8
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 2.9e-26 124.4 476 25.4
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 5.0e-26 123.6 443 27.1
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 1.1e-25 122.5 486 26.5
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 2.5e-25 121.3 465 25.8
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 3.2e-25 120.9 465 25.4
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 4.2e-25 120.6 477 26.6
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 7.2e-25 119.8 473 25.4
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 9.4e-25 119.4 497 27.0
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 9.4e-25 119.4 473 25.2
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 2.1e-24 118.2 164 37.8
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 4.7e-24 117.1 420 23.6
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.0e-24 116.3 435 25.5
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 1.0e-23 115.9 433 25.2
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 3.0e-23 114.4 465 25.2
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 4.0e-23 114.0 492 25.0
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 6.7e-23 113.2 292 27.7
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 6.7e-23 113.2 478 24.7
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 8.8e-23 112.8 458 23.6
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 2.0e-22 111.7 418 23.7
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 9.7e-22 109.4 466 25.3
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 3.7e-21 107.5 505 24.2
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.4e-20 104.8 458 24.7
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 5.3e-20 103.6 446 23.5
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 7.0e-20 103.2 473 26.0
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.2e-19 102.4 418 25.8
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 7.7e-19 99.8 444 25.0
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 1.0e-18 99.4 473 23.3
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.9e-17 95.1 220 28.6
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 2.1e-16 91.7 418 25.1
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 3.6e-16 90.9 390 23.8
Cfa026082 Carpinus fangiana HOM05D003578 ORTHO05D004021 1.4e-15 89.0 491 23.0
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 1.8e-15 88.6 452 23.9
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 6.8e-15 86.7 433 22.9
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 3.7e-13 80.9 500 22.8
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.5e-11 74.3 150 30.7
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 5.0e-10 70.5 197 29.4
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.5e-09 68.2 190 27.4
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.6e-08 65.5 181 30.4
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 6.1e-08 63.5 140 33.6


User provided reference genes

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