Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 7.1e-107 390.6 193 100.0
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.8e-65 253.1 174 70.1
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 4.4e-56 221.9 158 65.8
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 7.4e-56 221.1 160 64.4
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 6.3e-55 218.0 166 62.0
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 6.3e-55 218.0 187 58.8
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.8e-54 216.5 188 56.9
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.4e-54 216.1 188 59.0
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 7.0e-54 214.5 172 59.9
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 9.1e-54 214.2 188 56.4
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 9.1e-54 214.2 157 63.7
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.2e-53 213.8 156 64.7
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.2e-53 213.8 182 58.8
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.2e-53 213.8 189 57.7
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.2e-53 213.8 170 60.6
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 1.6e-53 213.4 190 55.8
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 1.6e-53 213.4 156 65.4
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 1.6e-53 213.4 182 58.8
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 2.0e-53 213.0 156 65.4
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.0e-53 213.0 156 65.4
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 3.5e-53 212.2 155 65.2
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 3.5e-53 212.2 156 63.5
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 4.5e-53 211.8 158 64.6
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 4.5e-53 211.8 179 58.7
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 5.9e-53 211.5 156 64.1
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 7.7e-53 211.1 179 58.7
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 1.0e-52 210.7 156 64.1
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.3e-52 210.3 155 63.2
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 1.3e-52 210.3 156 64.1
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 1.7e-52 209.9 155 65.2
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 2.2e-52 209.5 156 62.8
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 2.2e-52 209.5 156 62.8
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 2.2e-52 209.5 178 57.9
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.2e-52 209.5 155 63.2
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 2.2e-52 209.5 155 63.2
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 2.9e-52 209.1 157 62.4
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 2.9e-52 209.1 173 60.7
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 2.9e-52 209.1 156 64.1
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 5.0e-52 208.4 155 63.2
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 5.0e-52 208.4 166 61.4
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 5.0e-52 208.4 155 63.2
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 6.5e-52 208.0 168 58.9
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 6.5e-52 208.0 156 63.5
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 8.5e-52 207.6 156 62.8
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 1.1e-51 207.2 156 62.8
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.1e-51 207.2 185 57.8
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 1.1e-51 207.2 185 57.3
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.1e-51 207.2 156 62.8
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.1e-51 207.2 156 62.8
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.1e-51 207.2 156 62.8
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 2.5e-51 206.1 156 62.8
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.5e-51 206.1 158 61.4
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 2.5e-51 206.1 188 54.8
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 2.5e-51 206.1 156 62.2
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 3.2e-51 205.7 156 62.8
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 4.2e-51 205.3 189 55.6
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 4.2e-51 205.3 189 55.0
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 4.2e-51 205.3 172 57.6
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 5.5e-51 204.9 189 55.6
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 5.5e-51 204.9 155 60.6
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 5.5e-51 204.9 175 57.7
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 7.2e-51 204.5 155 63.9
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 7.2e-51 204.5 175 57.1
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 7.2e-51 204.5 156 62.2
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 9.4e-51 204.1 188 55.3
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 9.4e-51 204.1 156 60.3
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 9.4e-51 204.1 188 56.9
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 1.2e-50 203.8 156 60.9
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.2e-50 203.8 155 61.9
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.6e-50 203.4 189 54.5
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 1.6e-50 203.4 188 54.3
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 2.1e-50 203.0 156 61.5
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 2.1e-50 203.0 188 53.7
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 2.1e-50 203.0 156 61.5
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.1e-50 203.0 175 57.1
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 2.1e-50 203.0 157 60.5
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.1e-50 203.0 156 60.3
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 2.7e-50 202.6 155 60.6
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 2.7e-50 202.6 155 60.0
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.7e-50 202.6 156 62.2
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 3.6e-50 202.2 188 54.3
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 3.6e-50 202.2 189 52.9
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 4.7e-50 201.8 155 61.3
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 4.7e-50 201.8 156 60.9
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 6.1e-50 201.4 155 61.3
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 6.1e-50 201.4 172 57.0
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 6.1e-50 201.4 182 54.9
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 8.0e-50 201.1 156 60.9
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 8.0e-50 201.1 156 60.9
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 8.0e-50 201.1 189 53.4
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 1.0e-49 200.7 156 60.9
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 1.0e-49 200.7 156 60.9
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.0e-49 200.7 156 60.9
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 1.0e-49 200.7 156 61.5
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 1.4e-49 200.3 156 61.5
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 1.4e-49 200.3 156 60.3
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 1.4e-49 200.3 156 60.3
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.4e-49 200.3 157 58.6
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 1.8e-49 199.9 155 61.3
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 1.8e-49 199.9 142 65.5
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 2.3e-49 199.5 186 53.2
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 3.0e-49 199.1 171 55.6
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 4.0e-49 198.7 156 60.3
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 5.2e-49 198.4 157 58.6
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 5.2e-49 198.4 159 59.7
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 5.2e-49 198.4 188 53.2
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 5.2e-49 198.4 179 55.9
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 5.2e-49 198.4 156 60.3
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 5.2e-49 198.4 154 59.7
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 6.8e-49 198.0 155 58.7
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 8.8e-49 197.6 157 59.2
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 1.5e-48 196.8 156 59.6
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 2.6e-48 196.1 156 60.3
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 3.4e-48 195.7 156 60.3
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 4.4e-48 195.3 156 59.0
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 4.4e-48 195.3 156 57.7
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 5.7e-48 194.9 157 59.9
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 7.5e-48 194.5 156 57.7
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 9.7e-48 194.1 170 56.5
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 9.7e-48 194.1 156 59.0
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 1.3e-47 193.7 155 57.4
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.7e-47 193.4 156 59.0
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 2.8e-47 192.6 157 61.8
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.8e-47 192.6 157 61.8
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 6.3e-47 191.4 156 56.4
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 6.3e-47 191.4 156 57.1
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 8.3e-47 191.0 156 57.7
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 1.1e-46 190.7 176 54.0
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.1e-46 190.7 157 61.1
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.4e-46 190.3 157 61.1
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 1.4e-46 190.3 156 56.4
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 1.4e-46 190.3 156 58.3
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.1e-46 189.1 169 56.8
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 4.1e-46 188.7 171 52.6
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.2e-45 187.2 166 56.6
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 1.6e-45 186.8 157 54.8
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 7.7e-45 184.5 157 56.7
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 1.7e-44 183.3 189 49.7
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 5.0e-44 181.8 131 63.4
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.0e-44 181.8 171 55.6
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 8.5e-44 181.0 158 55.1
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 1.5e-43 180.3 129 63.6
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 3.2e-43 179.1 155 55.5
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 8.0e-42 174.5 159 56.0
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.0e-41 174.1 157 54.8
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 1.8e-41 173.3 156 54.5
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 3.4e-40 169.1 152 50.0
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 4.4e-40 168.7 126 62.7
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 9.8e-40 167.5 155 52.9
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 2.2e-39 166.4 156 53.8
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.0e-36 157.5 115 65.2
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.9e-36 156.0 141 55.3
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 5.5e-35 151.8 116 62.1
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 5.5e-35 151.8 124 57.3
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 4.0e-33 145.6 148 50.7
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 6.8e-33 144.8 87 82.8
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 8.9e-33 144.4 127 58.3
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.5e-32 143.7 130 57.7
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.4e-30 136.3 148 44.6
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.7e-28 130.2 96 60.4
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 3.3e-27 125.9 113 59.3
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 7.3e-27 124.8 156 45.5
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 9.5e-27 124.4 91 64.8
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.8e-25 120.2 190 40.0
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 8.9e-25 117.9 156 42.3
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.2e-24 117.5 156 42.3
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.5e-24 117.1 156 41.0
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 7.0e-22 108.2 89 58.4
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 3.5e-21 105.9 86 57.0
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 4.3e-19 99.0 71 59.2
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 9.5e-19 97.8 86 55.8
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 7.1e-14 81.6 175 32.6
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 7.6e-08 61.6 184 25.5
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.9e-06 57.0 73 43.8
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 2.4e-06 56.6 112 33.0
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 2.4e-06 56.6 59 39.0
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 7.1e-06 55.1 30 76.7
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 7.1e-06 55.1 66 43.9
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 7.1e-06 55.1 51 54.9


User provided reference genes

Program Settings