Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0041s0079 Marchantia polymorpha HOM05D006013 ORTHO05D007383 5.3e-207 724.2 379 100.0
ATR0737G078 Amborella trichopoda HOM05D006013 ORTHO05D007383 5.7e-76 288.9 280 53.2
TWI60G0250 Tripterygium wilfordii HOM05D006013 ORTHO05D007383 4.1e-74 282.7 280 51.1
Pp3c3_4160 Physcomitrium patens HOM05D006013 ORTHO05D007383 1.6e-73 280.8 354 44.6
Ciclev10021129m.g Citrus clementina HOM05D006013 ORTHO05D007383 2.0e-73 280.4 300 49.7
MD14G1002900 Malus domestica HOM05D006013 ORTHO05D007383 2.7e-73 280.0 279 51.6
MBI01_g13088_MAGBIO Magnolia biondii HOM05D006013 ORTHO05D007383 4.5e-73 279.3 275 52.7
Thecc.05G250300 Theobroma cacao HOM05D006013 ORTHO05D007383 7.7e-73 278.5 275 52.0
Atru.chr2.1392 Acer truncatum HOM05D006013 ORTHO05D007383 2.9e-72 276.6 278 52.5
PSO384G2178 Papaver somniferum HOM05D006013 ORTHO05D007383 2.9e-72 276.6 282 53.2
Cpa.g.sc51.125 Carica papaya HOM05D006013 ORTHO05D007383 5.0e-72 275.8 284 51.1
Glyma.19G112500 Glycine max HOM05D006013 ORTHO05D007383 5.0e-72 275.8 284 52.8
Eucgr.K01500 Eucalyptus grandis HOM05D006013 ORTHO05D007383 6.5e-72 275.4 276 51.4
GSVIVG01033407001 Vitis vinifera HOM05D006013 ORTHO05D007383 1.1e-71 274.6 296 48.6
Manes.09G140900 Manihot esculenta HOM05D006013 ORTHO05D007383 1.5e-71 274.2 282 51.4
PSO339G6099 Papaver somniferum HOM05D006013 ORTHO05D007383 1.9e-71 273.9 307 48.9
FAN26G3022 Fragaria x ananassa HOM05D006013 ORTHO05D007383 3.2e-71 273.1 287 48.1
TAR623G1171 Trochodendron aralioides HOM05D006013 ORTHO05D007383 4.2e-71 272.7 274 50.4
FvH4_1g28200 Fragaria vesca HOM05D006013 ORTHO05D007383 5.5e-71 272.3 287 48.1
Potri.019G035200 Populus trichocarpa HOM05D006013 ORTHO05D007383 1.2e-70 271.2 312 48.7
VMungo1383G3468 Vigna mungo HOM05D006013 ORTHO05D007383 1.6e-70 270.8 255 52.9
THA.LOC104820775 Tarenaya hassleriana HOM05D006013 ORTHO05D007383 2.7e-70 270.0 252 52.8
CANSAT78G0686 Cannabis sativa HOM05D006013 ORTHO05D007383 4.7e-70 269.2 293 49.8
Lj1g0017420 Lotus japonicus HOM05D006013 ORTHO05D007383 4.7e-70 269.2 276 50.4
Sc25g0004990 Simmondsia chinensis HOM05D006013 ORTHO05D007383 4.7e-70 269.2 277 50.2
Gohir.A11G235800 Gossypium hirsutum HOM05D006013 ORTHO05D007383 6.1e-70 268.9 277 49.8
RcHm_v2.0_Chr3g0497041 Rosa chinensis HOM05D006013 ORTHO05D007383 6.1e-70 268.9 248 52.4
Duzib177G0997 Durio zibethinus HOM05D006013 ORTHO05D007383 8.0e-70 268.5 274 50.4
Ca_08269_v3 Cicer arietinum L. HOM05D006013 ORTHO05D007383 1.4e-69 267.7 278 50.0
AUR62032699 Chenopodium quinoa HOM05D006013 ORTHO05D007383 1.8e-69 267.3 274 51.1
Gohir.D11G246700 Gossypium hirsutum HOM05D006013 ORTHO05D007383 2.3e-69 266.9 277 49.5
Lsat_1_v5_gn_6_37360 Lactuca sativa HOM05D006013 ORTHO05D007383 2.3e-69 266.9 297 47.8
Lalb_Chr14g0364531 Lupinus albus HOM05D006013 ORTHO05D007383 2.3e-69 266.9 286 49.3
Potri.013G057700 Populus trichocarpa HOM05D006013 ORTHO05D007383 2.3e-69 266.9 275 50.5
EL10Ac3g06825 Beta vulgaris HOM05D006013 ORTHO05D007383 3.0e-69 266.5 287 50.2
Medtr7g085670 Medicago truncatula HOM05D006013 ORTHO05D007383 3.0e-69 266.5 276 50.7
CiPaw.09G002300 Carya illinoinensis HOM05D006013 ORTHO05D007383 4.0e-69 266.2 252 52.0
Prupe.7G004600 Prunus persica HOM05D006013 ORTHO05D007383 4.0e-69 266.2 275 50.2
AUR62032048 Chenopodium quinoa HOM05D006013 ORTHO05D007383 5.2e-69 265.8 268 51.5
Aqoxy2G00451 Aquilegia oxysepala HOM05D006013 ORTHO05D007383 6.8e-69 265.4 294 48.3
Hma1.2p1_0152F.1_g067630 Hydrangea macrophylla HOM05D006013 ORTHO05D007383 6.8e-69 265.4 278 49.3
Phvul.001G111200 Phaseolus vulgaris HOM05D006013 ORTHO05D007383 6.8e-69 265.4 283 48.4
FAN28G1937 Fragaria x ananassa HOM05D006013 ORTHO05D007383 1.2e-68 264.6 284 48.2
Duzib106G1826 Durio zibethinus HOM05D006013 ORTHO05D007383 2.0e-68 263.8 279 48.7
Cfa016446 Carpinus fangiana HOM05D006013 ORTHO05D007383 3.4e-68 263.1 248 52.4
vmacro09136 Vaccinium macrocarpon HOM05D006013 ORTHO05D007383 4.4e-68 262.7 254 52.0
SGA_v2.0_scaffold94G28403 Striga asiatica HOM05D006013 ORTHO05D007383 5.7e-68 262.3 314 45.5
arahy.Tifrunner.gnm1.ann1.3D4EN7 Arachis hypogaea HOM05D006013 ORTHO05D007383 7.5e-68 261.9 280 48.6
Sp3g02860 Schrenkiella parvula HOM05D006013 ORTHO05D007383 1.3e-67 261.2 281 49.8
COL.COLO4_36081 Corchorus olitorius HOM05D006013 ORTHO05D007383 1.7e-67 260.8 277 49.1
arahy.Tifrunner.gnm1.ann1.779YCA Arachis hypogaea HOM05D006013 ORTHO05D007383 2.8e-67 260.0 280 48.2
PGR142G0352 Punica granatum HOM05D006013 ORTHO05D007383 2.8e-67 260.0 302 47.4
Os07g0573800 Oryza sativa ssp. japonica HOM05D006013 ORTHO05D007383 6.3e-67 258.8 243 53.5
Actinidia17301 Actinidia chinensis HOM05D006013 ORTHO05D007383 8.3e-67 258.5 277 49.5
BcaC05g30245 Brassica carinata HOM05D006013 ORTHO05D007383 8.3e-67 258.5 321 45.2
CSS0008476 Camellia sinensis var. sinensis HOM05D006013 ORTHO05D007383 8.3e-67 258.5 271 49.4
DCAR_013685 Daucus carota HOM05D006013 ORTHO05D007383 8.3e-67 258.5 270 50.4
BraA05t23090Z Brassica rapa HOM05D006013 ORTHO05D007383 1.4e-66 257.7 272 50.7
Haze_19424 Corylus avellana HOM05D006013 ORTHO05D007383 2.4e-66 256.9 262 50.4
MELO3C008805.2 Cucumis melo HOM05D006013 ORTHO05D007383 3.1e-66 256.5 283 47.0
CARHR078010 Cardamine hirsuta HOM05D006013 ORTHO05D007383 4.1e-66 256.1 283 48.4
BcaC05g30290 Brassica carinata HOM05D006013 ORTHO05D007383 5.4e-66 255.8 264 50.4
A05p43500 Brassica napus HOM05D006013 ORTHO05D007383 5.4e-66 255.8 272 51.1
Nn7g35862 Nelumbo nucifera HOM05D006013 ORTHO05D007383 5.4e-66 255.8 288 47.6
AT3G03890 Arabidopsis thaliana HOM05D006013 ORTHO05D007383 7.0e-66 255.4 276 49.3
Carub.0003s0312 Capsella rubella HOM05D006013 ORTHO05D007383 7.0e-66 255.4 272 49.6
AL3G13780 Arabidopsis lyrata HOM05D006013 ORTHO05D007383 9.1e-66 255.0 272 49.6
HanXRQChr02g0054551 Helianthus annuus HOM05D006013 ORTHO05D007383 9.1e-66 255.0 274 48.2
TPR.G5910 Trifolium pratense HOM05D006013 ORTHO05D007383 1.2e-65 254.6 248 52.4
CsaV3_4G013250 Cucumis sativus L. HOM05D006013 ORTHO05D007383 1.6e-65 254.2 268 48.5
Sabra13G0051400 Salix brachista HOM05D006013 ORTHO05D007383 2.0e-65 253.8 284 47.9
SalBow6G2467 Salvia bowleyana HOM05D006013 ORTHO05D007383 3.5e-65 253.1 267 47.2
Sed0009892 Sechium edule HOM05D006013 ORTHO05D007383 4.5e-65 252.7 285 44.9
BolC5t34969H Brassica oleracea HOM05D006013 ORTHO05D007383 5.9e-65 252.3 274 50.0
SMO358G0221 Selaginella moellendorffii HOM05D006013 ORTHO05D007383 5.9e-65 252.3 236 55.9
BcaC05g29895 Brassica carinata HOM05D006013 ORTHO05D007383 1.3e-64 251.1 268 50.0
Zm00001eb325150 Zea mays HOM05D006013 ORTHO05D007383 1.7e-64 250.8 257 51.0
ClCG04G005340 Citrullus lanatus HOM05D006013 ORTHO05D007383 2.9e-64 250.0 280 46.8
Cc06_g23030 Coffea canephora HOM05D006013 ORTHO05D007383 2.9e-64 250.0 255 50.6
SalBow1G1671 Salvia bowleyana HOM05D006013 ORTHO05D007383 8.6e-64 248.4 339 42.5
Sabra19G0046900 Salix brachista HOM05D006013 ORTHO05D007383 1.1e-63 248.1 275 48.0
Peaxi162Scf00463g00021 Petunia axillaris HOM05D006013 ORTHO05D007383 1.5e-63 247.7 280 48.9
Migut.K00008 Erythranthe guttata HOM05D006013 ORTHO05D007383 3.3e-63 246.5 274 48.5
Thhalv10021141m.g Eutrema salsugineum HOM05D006013 ORTHO05D007383 3.3e-63 246.5 272 48.9
ECA248G0640 Erigeron canadensis HOM05D006013 ORTHO05D007383 4.2e-63 246.1 265 47.2
MSTRG.26068 Avicennia marina HOM05D006013 ORTHO05D007383 9.5e-63 245.0 279 45.5
HanXRQChr03g0090471 Helianthus annuus HOM05D006013 ORTHO05D007383 9.5e-63 245.0 271 46.1
Nitab4.5_0000394g0050 Nicotiana tabacum HOM05D006013 ORTHO05D007383 9.5e-63 245.0 285 46.3
QL07p018334 Quercus lobata HOM05D006013 ORTHO05D007383 2.1e-62 243.8 266 47.7
SGA_v2.0_scaffold69G23026 Striga asiatica HOM05D006013 ORTHO05D007383 3.6e-62 243.0 256 48.0
Aa31LG5G14470 Aethionema arabicum HOM05D006013 ORTHO05D007383 1.0e-61 241.5 288 47.2
PGSC0003DMG400033345 Solanum tuberosum HOM05D006013 ORTHO05D007383 2.3e-61 240.4 266 46.6
MD12G1004200 Malus domestica HOM05D006013 ORTHO05D007383 6.8e-61 238.8 269 47.2
Sabra19G0043600 Salix brachista HOM05D006013 ORTHO05D007383 8.9e-61 238.4 288 45.8
Rhsim04G0092500 Rhododendron simsii HOM05D006013 ORTHO05D007383 1.5e-60 237.7 308 43.5
HPP92_018481 Vanilla planifolia HOM05D006013 ORTHO05D007383 1.5e-60 237.7 291 45.0
Migut.J01884 Erythranthe guttata HOM05D006013 ORTHO05D007383 5.7e-60 235.7 260 46.5
Solyc03g063240.3 Solanum lycopersicum HOM05D006013 ORTHO05D007383 5.7e-60 235.7 283 44.9
ECA233G0564 Erigeron canadensis HOM05D006013 ORTHO05D007383 1.8e-58 230.7 205 55.1
Nitab4.5_0000626g0030 Nicotiana tabacum HOM05D006013 ORTHO05D007383 3.1e-58 229.9 274 45.3
Hund24832 Selenicereus undatus HOM05D006013 ORTHO05D007383 4.1e-58 229.6 260 45.8
Oeu046747.1 Olea europaea HOM05D006013 ORTHO05D007383 1.2e-57 228.0 215 53.0
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 7.8e-57 225.3 237 49.4
unitig_46.g18447 Utricularia gibba HOM05D006013 ORTHO05D007383 7.8e-57 225.3 282 41.8
Manes.08G144700 Manihot esculenta HOM05D006013 ORTHO05D007383 1.3e-56 224.6 282 45.7
Dinv37019 Davidia involucrata HOM05D006013 ORTHO05D007383 6.6e-56 222.2 249 47.0
Hund19233 Selenicereus undatus HOM05D006013 ORTHO05D007383 3.3e-55 219.9 311 39.9
Lsat_1_v5_gn_1_59740 Lactuca sativa HOM05D006013 ORTHO05D007383 5.6e-55 219.2 271 43.9
Glyma.16G040700 Glycine max HOM05D006013 ORTHO05D007383 1.0e-53 214.9 224 51.8
MD12G1004000 Malus domestica HOM05D006013 ORTHO05D007383 2.3e-53 213.8 239 47.3
Gorai.007G262600 Gossypium raimondii HOM05D006013 ORTHO05D007383 5.8e-52 209.1 221 48.9
Sopen03g015800 Solanum pennellii HOM05D006013 ORTHO05D007383 9.8e-52 208.4 205 50.2
CDE05G2375 Ceratophyllum demersum HOM05D006013 ORTHO05D007383 1.1e-50 204.9 274 40.9
CBR_g45943 Chara braunii HOM05D006013 ORTHO05D007383 1.5e-44 184.5 251 42.2
Hma1.2p1_0152F.1_g067650 Hydrangea macrophylla HOM05D006013 ORTHO05D007383 3.7e-43 179.9 164 51.2
MCO02G120 Micromonas commoda HOM05D006013 ORTHO05D007383 1.7e-40 171.0 249 40.6
Cre02.g098250 Chlamydomonas reinhardtii HOM05D006013 ORTHO05D007383 6.0e-33 146.0 256 35.9
PRCOL_00004085 Prasinoderma coloniale HOM05D006013 ORTHO05D007383 3.3e-31 140.2 258 33.7
HPP92_018470 Vanilla planifolia HOM05D006013 ORTHO05D007383 3.6e-30 136.7 201 39.8
SEGI_12732 Sequoiadendron giganteum HOM05D006013 ORTHO05D007383 8.9e-29 132.1 113 52.2
AagrBONN_evm.TU.Sc2ySwM_228.4283 Anthoceros agrestis HOM05D006013 ORTHO05D007383 4.7e-22 109.8 219 35.6
Lj1A1136T62 Lonicera japonica HOM05D006013 ORTHO05D007383 3.2e-18 97.1 98 51.0
CAN.G323.2 Capsicum annuum HOM05D006013 ORTHO05D007383 1.5e-15 88.2 126 45.2
Psat6g151880 Pisum sativum HOM05D006013 ORTHO05D007383 9.6e-15 85.5 72 58.3
AagrBONN_evm.TU.Sc2ySwM_368.2001 Anthoceros agrestis HOM05D005491 ORTHO05D006973 8.1e-14 82.4 236 29.7
PGR142G2967 Punica granatum HOM05D006013 ORTHO05D007383 6.4e-11 72.8 131 38.2
Pp3c7_5080 Physcomitrium patens HOM05D005491 ORTHO05D006973 4.6e-09 66.6 266 26.3
FAN19G2205 Fragaria x ananassa HOM05D006013 ORTHO05D007383 1.8e-08 64.7 102 37.3
Mapoly0153s0003 Marchantia polymorpha HOM05D003731 ORTHO05D004429 2.8e-06 57.4 203 24.6
Medtr4g007990 Medicago truncatula HOM05D003731 ORTHO05D004429 4.8e-06 56.6 189 26.5
BraA05t21647Z Brassica rapa HOM05D003731 ORTHO05D004429 6.2e-06 56.2 234 24.4
Eucgr.F04024 Eucalyptus grandis HOM05D003731 ORTHO05D004429 6.2e-06 56.2 144 29.9


User provided reference genes

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