Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 0.0e+00 1167.1 585 100.0
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 1.8e-105 387.5 346 56.6
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 4.8e-98 362.8 318 58.5
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 7.7e-96 355.5 373 50.7
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 2.6e-88 330.5 422 45.5
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 7.2e-78 295.8 324 49.1
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.6e-77 294.7 324 48.8
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 2.7e-77 293.9 279 52.0
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.7e-77 293.9 274 53.3
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 2.7e-77 293.9 226 63.7
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 8.0e-77 292.4 271 53.1
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 8.0e-77 292.4 315 49.5
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 8.0e-77 292.4 274 53.6
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 1.0e-76 292.0 266 53.4
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 1.0e-76 292.0 266 53.4
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 1.4e-76 291.6 272 54.8
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 1.8e-76 291.2 294 51.0
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.3e-76 290.8 324 48.1
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 5.2e-76 289.7 278 53.2
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 8.8e-76 288.9 307 49.2
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 1.2e-75 288.5 285 51.2
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.2e-75 288.5 263 54.4
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 1.2e-75 288.5 277 53.1
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 1.5e-75 288.1 274 52.2
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 1.5e-75 288.1 388 42.0
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 2.0e-75 287.7 273 52.0
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 2.0e-75 287.7 285 51.9
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 2.0e-75 287.7 278 53.2
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 2.6e-75 287.3 269 52.8
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 2.6e-75 287.3 269 52.8
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 2.6e-75 287.3 308 49.4
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 2.6e-75 287.3 372 42.7
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 3.4e-75 287.0 269 52.8
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 3.4e-75 287.0 269 52.8
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 3.4e-75 287.0 269 52.8
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 4.4e-75 286.6 277 53.1
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 4.4e-75 286.6 269 53.5
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 4.4e-75 286.6 301 48.5
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 5.7e-75 286.2 271 52.0
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 5.7e-75 286.2 273 51.6
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 7.5e-75 285.8 277 51.3
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 7.5e-75 285.8 262 53.4
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 9.7e-75 285.4 274 52.9
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 9.7e-75 285.4 282 51.1
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 1.3e-74 285.0 330 48.2
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 1.3e-74 285.0 272 54.0
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.7e-74 284.6 355 43.7
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 1.7e-74 284.6 273 50.9
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 2.2e-74 284.3 363 44.6
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 2.8e-74 283.9 291 50.2
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 3.7e-74 283.5 339 45.4
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 3.7e-74 283.5 359 44.0
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 3.7e-74 283.5 278 52.2
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 4.8e-74 283.1 303 48.8
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 4.8e-74 283.1 273 50.9
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 6.3e-74 282.7 273 51.3
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 8.3e-74 282.3 269 51.3
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 8.3e-74 282.3 273 51.3
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 1.1e-73 282.0 277 51.3
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 1.4e-73 281.6 277 52.0
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 2.4e-73 280.8 357 43.4
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 2.4e-73 280.8 308 49.0
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 3.1e-73 280.4 262 51.9
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 3.1e-73 280.4 260 53.1
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 4.1e-73 280.0 263 51.7
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 4.1e-73 280.0 268 52.6
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 5.3e-73 279.6 361 45.2
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 7.0e-73 279.3 302 50.0
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 1.2e-72 278.5 270 51.9
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 1.2e-72 278.5 320 47.8
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 1.6e-72 278.1 302 50.3
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 2.0e-72 277.7 376 42.8
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 2.0e-72 277.7 327 47.4
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 2.7e-72 277.3 379 42.5
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 2.7e-72 277.3 270 51.5
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 3.5e-72 276.9 260 53.5
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 3.5e-72 276.9 332 44.9
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 1.0e-71 275.4 344 44.8
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 1.7e-71 274.6 272 50.4
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 1.7e-71 274.6 271 50.9
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 2.2e-71 274.2 272 51.8
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 3.8e-71 273.5 274 50.4
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 6.5e-71 272.7 336 45.2
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 1.1e-70 271.9 275 51.3
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 4.2e-70 270.0 250 52.4
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 9.4e-70 268.9 323 45.5
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.0e-68 265.4 262 50.0
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 1.2e-67 261.9 270 49.6
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 5.7e-67 259.6 294 46.9
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 9.8e-67 258.8 258 51.6
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 1.3e-66 258.5 271 50.2
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 1.1e-62 245.4 313 42.2
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 3.3e-62 243.8 307 45.3
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 4.2e-62 243.4 262 48.5
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 2.8e-61 240.7 277 47.7
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 3.6e-61 240.4 224 53.1
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 1.8e-60 238.0 257 47.9
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 6.3e-58 229.6 353 41.4
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 5.9e-56 223.0 169 56.8
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 5.6e-54 216.5 355 40.0
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 7.3e-54 216.1 271 43.5
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 1.6e-53 214.9 167 55.7
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 2.1e-53 214.5 223 49.3
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 1.6e-45 188.3 120 67.5
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 1.1e-44 185.7 261 38.7
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 1.2e-40 172.2 284 37.7
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 5.1e-39 166.8 153 54.2
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 6.6e-39 166.4 331 33.2
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 1.6e-32 145.2 399 31.6
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 3.3e-30 137.5 105 58.1
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 1.1e-28 132.5 202 35.1
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 1.9e-25 121.7 150 48.0
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 9.3e-25 119.4 148 44.6
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.0e-23 115.9 107 48.6
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 8.7e-23 112.8 143 44.1
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 6.2e-21 106.7 345 29.0
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 1.7e-18 98.6 61 67.2
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 1.1e-17 95.9 56 71.4
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 1.6e-16 92.0 107 41.1
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.0e-15 89.4 215 32.1
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 5.1e-15 87.0 235 30.2
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 9.6e-14 82.8 127 42.5
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 2.7e-08 64.7 177 29.9
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 1.3e-07 62.4 94 42.6
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 5.1e-07 60.5 109 40.4
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 1.9e-06 58.5 96 40.6


User provided reference genes

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