Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0041s0058 Marchantia polymorpha HOM05D006784 ORTHO05D008508 9.1e-198 693.3 343 100.0
SEGI_09486 Sequoiadendron giganteum HOM05D006784 ORTHO05D008508 2.6e-83 313.2 324 47.8
ATR1089G080 Amborella trichopoda HOM05D006784 ORTHO05D008508 7.7e-80 301.6 301 46.5
arahy.Tifrunner.gnm1.ann1.VA03RP Arachis hypogaea HOM05D006784 ORTHO05D008508 7.2e-78 295.0 298 46.0
CsaV3_5G039470 Cucumis sativus L. HOM05D006784 ORTHO05D008508 1.2e-77 294.3 326 43.9
Dinv08766 Davidia involucrata HOM05D006784 ORTHO05D008508 1.2e-77 294.3 324 44.4
arahy.Tifrunner.gnm1.ann1.9TUP5I Arachis hypogaea HOM05D006784 ORTHO05D008508 2.1e-77 293.5 298 45.6
ECA232G1810 Erigeron canadensis HOM05D006784 ORTHO05D008508 3.6e-77 292.7 316 47.5
Actinidia01543 Actinidia chinensis HOM05D006784 ORTHO05D008508 1.0e-76 291.2 322 42.5
Potri.013G095300 Populus trichocarpa HOM05D006784 ORTHO05D008508 1.0e-76 291.2 320 43.4
MELO3C022124.2 Cucumis melo HOM05D006784 ORTHO05D008508 1.4e-76 290.8 332 43.1
Thecc.08G168600 Theobroma cacao HOM05D006784 ORTHO05D008508 2.3e-76 290.0 322 42.9
TPR.G25500 Trifolium pratense HOM05D006784 ORTHO05D008508 2.3e-76 290.0 292 45.2
EL10Ac1g01284 Beta vulgaris HOM05D006784 ORTHO05D008508 8.8e-76 288.1 326 44.8
ClCG08G001730 Citrullus lanatus HOM05D006784 ORTHO05D008508 1.2e-75 287.7 318 43.4
Sabra13G0081300 Salix brachista HOM05D006784 ORTHO05D008508 1.5e-75 287.3 325 42.5
Sed0009601 Sechium edule HOM05D006784 ORTHO05D008508 1.5e-75 287.3 308 44.2
GSVIVG01037159001 Vitis vinifera HOM05D006784 ORTHO05D008508 1.5e-75 287.3 319 43.3
Manes.02G202800 Manihot esculenta HOM05D006784 ORTHO05D008508 2.6e-75 286.6 322 44.4
Gorai.009G262200 Gossypium raimondii HOM05D006784 ORTHO05D008508 4.4e-75 285.8 303 42.6
MBI03_g07138_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D008508 5.7e-75 285.4 304 44.4
HanXRQChr09g0266871 Helianthus annuus HOM05D006784 ORTHO05D008508 7.5e-75 285.0 300 46.3
Medtr3g006210 Medicago truncatula HOM05D006784 ORTHO05D008508 7.5e-75 285.0 292 43.8
Lalb_Chr15g0080091 Lupinus albus HOM05D006784 ORTHO05D008508 1.3e-74 284.3 308 42.2
CSS0003574 Camellia sinensis var. sinensis HOM05D006784 ORTHO05D008508 2.8e-74 283.1 328 43.6
RcHm_v2.0_Chr6g0249611 Rosa chinensis HOM05D006784 ORTHO05D008508 2.8e-74 283.1 321 43.9
Nn5g27234 Nelumbo nucifera HOM05D006784 ORTHO05D008508 3.7e-74 282.7 320 45.0
Atru.chr13.2579 Acer truncatum HOM05D006784 ORTHO05D008508 6.3e-74 282.0 331 43.5
Sc23g0000020 Simmondsia chinensis HOM05D006784 ORTHO05D008508 6.3e-74 282.0 285 47.4
Lsat_1_v5_gn_4_133060 Lactuca sativa HOM05D006784 ORTHO05D008508 1.8e-73 280.4 318 45.0
PSO761G0491 Papaver somniferum HOM05D006784 ORTHO05D008508 1.8e-73 280.4 318 42.1
Rhsim12G0001900 Rhododendron simsii HOM05D006784 ORTHO05D008508 1.8e-73 280.4 330 44.2
Migut.C01398 Erythranthe guttata HOM05D006784 ORTHO05D008508 2.4e-73 280.0 307 45.0
Hund26939 Selenicereus undatus HOM05D006784 ORTHO05D008508 3.1e-73 279.6 326 45.7
FvH4_2g00320 Fragaria vesca HOM05D006784 ORTHO05D008508 4.1e-73 279.3 318 43.1
Glyma.04G110300 Glycine max HOM05D006784 ORTHO05D008508 5.3e-73 278.9 310 42.6
Oeu035045.1 Olea europaea HOM05D006784 ORTHO05D008508 5.3e-73 278.9 325 41.8
VMungo1080G0261 Vigna mungo HOM05D001255 ORTHO05D001246 5.3e-73 278.9 334 40.1
Aa31LG4G9210 Aethionema arabicum HOM05D006784 ORTHO05D008508 7.0e-73 278.5 319 44.8
Thhalv10019786m.g Eutrema salsugineum HOM05D006784 ORTHO05D008508 1.6e-72 277.3 328 43.0
DCAR_003507 Daucus carota HOM05D006784 ORTHO05D008508 2.0e-72 276.9 321 42.7
AL2G31000 Arabidopsis lyrata HOM05D006784 ORTHO05D008508 3.5e-72 276.2 326 43.6
CANSAT11G0581 Cannabis sativa HOM05D006784 ORTHO05D008508 5.9e-72 275.4 305 44.9
PSO210G0863 Papaver somniferum HOM05D006784 ORTHO05D008508 7.7e-72 275.0 316 40.8
Sp5g26500 Schrenkiella parvula HOM05D006784 ORTHO05D008508 7.7e-72 275.0 316 42.4
TAR376G1107 Trochodendron aralioides HOM05D006784 ORTHO05D008508 7.7e-72 275.0 261 47.1
HPP92_019449 Vanilla planifolia HOM05D006784 ORTHO05D008508 1.0e-71 274.6 330 41.8
unitig_46.g17979 Utricularia gibba HOM05D006784 ORTHO05D008508 1.3e-71 274.2 332 42.5
Phvul.005G002500 Phaseolus vulgaris HOM05D006784 ORTHO05D008508 2.2e-71 273.5 290 43.1
AT1G71340 Arabidopsis thaliana HOM05D006784 ORTHO05D008508 2.9e-71 273.1 318 42.8
A07p37620 Brassica napus HOM05D006784 ORTHO05D008508 6.5e-71 271.9 327 41.6
BraA07t31326Z Brassica rapa HOM05D006784 ORTHO05D008508 6.5e-71 271.9 319 41.7
Sopen11g020490 Solanum pennellii HOM05D006784 ORTHO05D008508 8.5e-71 271.6 327 42.2
CARHR064620 Cardamine hirsuta HOM05D006784 ORTHO05D008508 1.1e-70 271.2 319 41.4
FAN24G3159 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.9e-70 270.4 271 45.8
Carub.0002s1820 Capsella rubella HOM05D006784 ORTHO05D008508 2.5e-70 270.0 319 41.4
CAN.G567.5 Capsicum annuum HOM05D006784 ORTHO05D008508 3.2e-70 269.6 283 44.5
Glyma.06G323800 Glycine max HOM05D006784 ORTHO05D008508 4.2e-70 269.2 311 42.1
QL09p001285 Quercus lobata HOM05D006784 ORTHO05D008508 2.7e-69 266.5 338 39.6
BcaB03g14890 Brassica carinata HOM05D006784 ORTHO05D008508 3.6e-69 266.2 328 41.8
Eucgr.F02928 Eucalyptus grandis HOM05D006784 ORTHO05D008508 6.1e-69 265.4 322 40.4
Ciclev10021219m.g Citrus clementina HOM05D006784 ORTHO05D008508 6.8e-68 261.9 322 42.9
Lj7A416T40 Lonicera japonica HOM05D006784 ORTHO05D008508 8.8e-68 261.5 282 45.4
Cc10_g16080 Coffea canephora HOM05D006784 ORTHO05D008508 1.2e-67 261.2 306 41.5
THA.LOC104809757 Tarenaya hassleriana HOM05D006784 ORTHO05D008508 4.4e-67 259.2 297 42.1
BcaC08g46565 Brassica carinata HOM05D006784 ORTHO05D008508 7.5e-67 258.5 323 41.5
C06p45390 Brassica napus HOM05D006784 ORTHO05D008508 9.8e-67 258.1 323 41.2
BolC6t39596H Brassica oleracea HOM05D006784 ORTHO05D008508 9.8e-67 258.1 323 40.9
AUR62038543 Chenopodium quinoa HOM05D006784 ORTHO05D008508 2.3e-63 246.9 328 40.9
TWI12G0477 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 9.5e-62 241.5 274 44.9
AUR62013392 Chenopodium quinoa HOM05D006784 ORTHO05D008508 3.0e-60 236.5 326 39.6
Lj3g0009982 Lotus japonicus HOM05D006784 ORTHO05D008508 5.2e-60 235.7 325 36.6
Gohir.A05G248533 Gossypium hirsutum HOM05D006784 ORTHO05D008508 2.0e-59 233.8 256 41.4
Nitab4.5_0000079g0180 Nicotiana tabacum HOM05D006784 ORTHO05D008508 1.3e-58 231.1 378 36.2
Duzib177G0427 Durio zibethinus HOM05D006784 ORTHO05D008508 3.3e-54 216.5 322 37.0
AagrBONN_evm.TU.Sc2ySwM_344.2721 Anthoceros agrestis HOM05D006784 ORTHO05D008508 5.6e-54 215.7 273 38.8
Nitab4.5_0001489g0040 Nicotiana tabacum HOM05D006784 ORTHO05D008508 9.8e-51 204.9 318 36.2
vmacro00953 Vaccinium macrocarpon HOM05D006784 ORTHO05D008508 2.9e-50 203.4 310 36.5
Ca_13985_v3 Cicer arietinum L. HOM05D006784 ORTHO05D008508 1.4e-49 201.1 205 42.9
PGR119G1188 Punica granatum HOM05D006784 ORTHO05D008508 2.7e-48 196.8 344 34.6
Aqoxy5G01860 Aquilegia oxysepala HOM05D006784 ORTHO05D008508 1.0e-47 194.9 211 43.6
CDE08G1443 Ceratophyllum demersum HOM05D006784 ORTHO05D008508 3.0e-47 193.4 240 42.9
CiPaw.03G012700 Carya illinoinensis HOM05D006784 ORTHO05D008508 1.1e-46 191.4 208 42.8
Psat5g232280 Pisum sativum HOM05D006784 ORTHO05D008508 1.1e-46 191.4 215 39.5
SGA_v2.0_scaffold118G32637 Striga asiatica HOM05D006784 ORTHO05D008508 8.0e-45 185.3 254 39.0
Cpa.g.sc142.7 Carica papaya HOM05D006784 ORTHO05D008508 4.4e-43 179.5 267 36.0
Prupe.8G003500 Prunus persica HOM05D006784 ORTHO05D008508 3.2e-41 173.3 212 38.2
Solyc11g045040.2 Solanum lycopersicum HOM05D006784 ORTHO05D008508 2.1e-40 170.6 209 39.2
FAN19G1248 Fragaria x ananassa HOM05D006784 ORTHO05D008508 6.0e-40 169.1 269 36.8
Ah.05g170450 Amaranthus hybridus HOM05D006784 ORTHO05D008508 3.7e-34 149.8 287 32.4
Gohir.D05G250801 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.1e-33 148.3 180 38.9
Zm00001eb167850 Zea mays HOM05D006784 ORTHO05D008508 1.9e-33 147.5 211 36.0
Cre02.g115750 Chlamydomonas reinhardtii HOM05D006784 ORTHO05D008508 4.1e-33 146.4 296 29.4
TWI12G0001 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 5.4e-33 146.0 279 33.7
HPP92_019452 Vanilla planifolia HOM05D006784 ORTHO05D008508 4.3e-30 136.3 126 48.4
COL.COLO4_25079 Corchorus olitorius HOM05D006784 ORTHO05D008508 2.8e-29 133.7 122 48.4
Haze_14004 Corylus avellana HOM05D006784 ORTHO05D008508 8.9e-28 128.6 189 34.9
CBR_g18896 Chara braunii HOM05D006784 ORTHO05D008508 4.3e-22 109.8 162 32.1
Peaxi162Scf00078g01023 Petunia axillaris HOM05D006784 ORTHO05D008508 6.2e-21 105.9 169 42.0
FAN20G3191 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.8e-20 104.4 113 48.7
PGSC0003DMG401006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 9.0e-20 102.1 120 44.2
Peaxi162Scf00078g01017 Petunia axillaris HOM05D006784 ORTHO05D008508 3.4e-19 100.1 96 46.9
MCO03G046 Micromonas commoda HOM05D006784 ORTHO05D008508 1.3e-18 98.2 284 28.2
Hma1.2p1_0238F.1_g099740 Hydrangea macrophylla HOM05D006784 ORTHO05D008508 1.4e-17 94.7 103 39.8
Atru.chr7.394 Acer truncatum HOM05D006784 ORTHO05D008508 3.5e-16 90.1 93 49.5
Os11g0236000 Oryza sativa ssp. japonica HOM05D006784 ORTHO05D008508 3.5e-16 90.1 80 51.2
PGSC0003DMG402006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 1.3e-15 88.2 92 43.5
MD05G1006200 Malus domestica HOM05D006784 ORTHO05D008508 1.7e-15 87.8 80 45.0
Gorai.005G166200 Gossypium raimondii HOM05D006784 ORTHO05D008508 2.8e-13 80.5 72 43.1
Gohir.D08G237350 Gossypium hirsutum HOM05D006784 ORTHO05D008508 8.1e-13 79.0 72 41.7
FvH4_2g04920 Fragaria vesca HOM05D006784 ORTHO05D008508 9.9e-11 72.0 180 26.1
Pp3s30_470 Physcomitrium patens HOM05D000306 ORTHO05D317356 6.7e-07 59.3 217 21.7


User provided reference genes

Program Settings