Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 2.0e-187 659.1 355 100.0
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 3.2e-137 492.3 338 73.4
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 4.8e-133 478.4 342 71.9
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 8.1e-133 477.6 306 78.1
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 3.2e-129 465.7 324 70.1
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.6e-128 463.4 349 66.5
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.6e-128 463.4 349 66.5
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 3.5e-128 462.2 319 71.5
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 1.0e-127 460.7 313 72.2
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 3.9e-127 458.8 333 67.6
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 2.5e-126 456.1 348 66.7
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 2.5e-126 456.1 353 65.2
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 4.3e-126 455.3 321 69.8
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 5.6e-126 454.9 300 73.3
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 7.4e-126 454.5 337 67.4
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 1.3e-125 453.8 337 67.1
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 2.8e-125 452.6 326 70.2
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.8e-125 452.6 321 70.1
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 2.8e-125 452.6 321 69.5
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 4.8e-125 451.8 353 65.2
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 6.2e-125 451.4 344 66.9
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 8.1e-125 451.1 312 71.8
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 1.1e-124 450.7 343 66.2
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 1.1e-124 450.7 354 64.7
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 1.1e-124 450.7 308 71.8
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 1.4e-124 450.3 352 65.1
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.4e-124 450.3 328 68.0
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.4e-124 450.3 344 65.7
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 1.8e-124 449.9 336 67.9
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 2.4e-124 449.5 330 67.9
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 3.1e-124 449.1 318 69.2
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 3.1e-124 449.1 343 65.9
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 4.0e-124 448.7 318 68.9
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 5.3e-124 448.4 326 68.7
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 5.3e-124 448.4 321 68.8
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 6.9e-124 448.0 295 74.2
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 6.9e-124 448.0 344 66.0
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 6.9e-124 448.0 321 68.5
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 9.0e-124 447.6 314 69.1
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.5e-123 446.8 342 66.4
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 2.0e-123 446.4 328 67.7
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 2.0e-123 446.4 324 67.6
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 2.0e-123 446.4 330 68.2
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 2.6e-123 446.0 338 67.5
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 2.6e-123 446.0 340 66.8
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 3.4e-123 445.7 338 66.0
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 3.4e-123 445.7 343 65.3
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 3.4e-123 445.7 318 69.8
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 4.5e-123 445.3 338 66.3
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 5.8e-123 444.9 338 66.3
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 5.8e-123 444.9 334 65.6
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 7.6e-123 444.5 295 72.9
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 7.6e-123 444.5 325 67.7
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 7.6e-123 444.5 329 66.6
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 9.9e-123 444.1 325 67.4
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 9.9e-123 444.1 338 66.3
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 1.7e-122 443.4 339 66.1
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 1.7e-122 443.4 339 66.1
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 1.7e-122 443.4 339 66.1
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 2.2e-122 443.0 328 66.8
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 3.8e-122 442.2 311 69.5
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 6.4e-122 441.4 318 68.2
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 6.4e-122 441.4 308 69.8
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 8.4e-122 441.0 310 70.0
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 8.4e-122 441.0 322 68.0
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 8.4e-122 441.0 322 68.0
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 8.4e-122 441.0 322 68.0
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 8.4e-122 441.0 300 71.0
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 1.1e-121 440.7 333 65.8
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 1.9e-121 439.9 346 65.0
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 2.5e-121 439.5 318 68.2
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 3.2e-121 439.1 333 65.2
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 4.2e-121 438.7 298 70.8
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 7.1e-121 438.0 327 67.0
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 7.1e-121 438.0 350 64.0
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 7.1e-121 438.0 343 63.3
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 2.1e-120 436.4 347 63.7
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 2.7e-120 436.0 344 63.1
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 3.5e-120 435.6 369 61.8
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 3.5e-120 435.6 346 63.9
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 6.0e-120 434.9 315 67.6
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 7.9e-120 434.5 344 64.2
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 7.9e-120 434.5 313 67.7
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 7.9e-120 434.5 313 67.7
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 7.9e-120 434.5 346 64.2
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 7.9e-120 434.5 321 67.3
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 1.8e-119 433.3 348 64.1
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 5.1e-119 431.8 338 64.2
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 1.5e-118 430.3 300 69.0
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 1.5e-118 430.3 296 69.9
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 2.5e-118 429.5 315 67.0
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 7.4e-118 427.9 329 64.4
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 7.4e-118 427.9 350 62.9
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 7.4e-118 427.9 354 61.3
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 2.0e-115 419.9 283 71.4
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 2.6e-115 419.5 316 67.7
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.6e-115 419.5 345 61.4
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 2.6e-115 419.5 345 61.4
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 3.4e-115 419.1 322 64.6
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 4.5e-115 418.7 325 64.3
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 3.8e-114 415.6 327 64.5
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 1.9e-113 413.3 323 64.4
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 1.0e-111 407.5 343 60.9
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.3e-111 407.1 351 60.1
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 8.7e-111 404.4 307 65.5
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.1e-108 397.5 306 64.4
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 1.4e-108 397.1 280 68.6
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 1.8e-108 396.7 321 62.3
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 2.4e-108 396.4 308 64.6
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.2e-107 394.0 340 60.6
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.2e-107 394.0 303 64.7
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 1.2e-104 384.0 327 61.8
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 6.1e-104 381.7 392 53.1
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 2.3e-103 379.8 267 68.9
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 6.3e-101 371.7 292 65.4
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.4e-100 370.5 339 58.1
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.4e-100 370.5 339 58.1
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 1.2e-99 367.5 332 58.7
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 7.2e-97 358.2 346 56.6
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 1.6e-96 357.1 267 66.3
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 8.8e-95 351.3 260 69.2
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 1.5e-94 350.5 284 63.4
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 2.6e-94 349.7 310 60.0
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.2e-91 340.9 313 56.9
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 1.3e-90 337.4 359 52.4
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 1.3e-90 337.4 242 66.9
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 3.8e-90 335.9 345 53.9
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 6.5e-90 335.1 231 70.6
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 4.7e-88 328.9 239 68.2
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 2.4e-84 316.6 196 76.0
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 7.0e-84 315.1 293 55.3
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 6.1e-80 302.0 218 67.9
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.7e-77 292.7 224 64.3
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 8.8e-71 271.6 352 45.7
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.7e-69 267.3 235 59.1
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 4.1e-68 262.7 173 74.0
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.2e-56 224.6 148 69.6
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 8.0e-56 221.9 262 49.6
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 4.9e-53 212.6 183 59.6
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 3.2e-44 183.3 167 59.3
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 7.8e-35 152.1 120 65.8
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.2e-32 144.8 118 63.6
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 3.1e-31 140.2 215 34.4
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.4e-30 136.7 111 62.2
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.6e-27 126.3 93 64.5
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 7.8e-27 125.6 82 70.7
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 1.9e-25 120.9 126 57.1
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 7.3e-25 119.0 86 64.0
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 9.9e-22 108.6 117 53.8
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 8.4e-21 105.5 87 58.6
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 9.3e-20 102.1 118 49.2
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.0e-18 98.6 60 71.7
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.3e-18 97.4 83 56.6
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 9.6e-17 92.0 90 51.1
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 9.6e-17 92.0 86 52.3
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.8e-15 87.8 87 51.7
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 1.6e-11 74.7 52 61.5
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 1.8e-10 71.2 79 54.4


User provided reference genes

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