Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 1.8e-262 908.7 444 100.0
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 6.5e-156 554.7 437 59.3
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 2.5e-155 552.7 437 59.5
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 4.7e-154 548.5 437 59.7
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 1.2e-152 543.9 437 58.8
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 1.5e-152 543.5 437 59.0
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 4.4e-152 542.0 432 60.0
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 5.7e-152 541.6 429 59.9
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 7.5e-152 541.2 436 58.7
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 7.5e-152 541.2 437 59.5
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 1.3e-151 540.4 437 58.6
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 1.7e-151 540.0 437 58.4
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 8.3e-151 537.7 431 58.5
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 1.4e-150 537.0 431 59.9
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.8e-150 536.6 439 58.3
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 1.8e-150 536.6 429 58.5
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 4.1e-150 535.4 431 58.0
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 4.1e-150 535.4 432 59.0
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 7.0e-150 534.6 437 57.7
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 1.6e-149 533.5 429 58.7
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 2.0e-149 533.1 429 57.1
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 2.0e-149 533.1 439 57.2
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 2.0e-149 533.1 437 57.7
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 3.5e-149 532.3 437 57.7
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 4.5e-149 531.9 439 56.9
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 5.9e-149 531.6 436 56.9
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 1.7e-148 530.0 425 58.8
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 1.7e-148 530.0 428 58.2
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 3.8e-148 528.9 425 59.3
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 3.8e-148 528.9 437 57.7
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 5.0e-148 528.5 438 57.5
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 6.6e-148 528.1 429 58.0
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 6.6e-148 528.1 443 58.9
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.1e-147 527.3 438 58.0
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 5.5e-147 525.0 429 59.4
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 2.1e-146 523.1 438 57.1
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 3.6e-146 522.3 438 56.8
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.8e-145 520.0 429 57.8
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 2.3e-145 519.6 439 57.2
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 3.0e-145 519.2 437 58.1
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 4.0e-145 518.8 441 56.5
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 8.9e-145 517.7 437 57.2
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 1.5e-144 516.9 462 53.9
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 3.4e-144 515.8 437 56.1
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 9.8e-144 514.2 442 56.3
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 2.2e-143 513.1 459 54.0
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 2.2e-143 513.1 461 54.0
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 3.7e-143 512.3 437 55.8
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 4.9e-143 511.9 431 57.5
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 8.3e-143 511.1 431 56.6
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 1.1e-142 510.8 447 56.4
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 2.4e-142 509.6 438 55.7
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 2.4e-142 509.6 437 55.6
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 4.1e-142 508.8 394 60.2
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 9.2e-142 507.7 439 56.0
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 3.9e-140 502.3 429 56.4
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 8.6e-140 501.1 445 54.6
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 1.9e-139 500.0 431 56.6
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 2.5e-139 499.6 434 56.2
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 3.3e-139 499.2 429 56.2
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 5.6e-139 498.4 438 55.7
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 9.5e-139 497.7 437 55.4
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 1.6e-138 496.9 441 54.6
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 4.7e-138 495.4 439 56.0
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 8.0e-138 494.6 429 55.9
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 1.2e-136 490.7 441 56.9
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 2.6e-136 489.6 418 56.9
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 2.6e-136 489.6 437 55.4
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 3.4e-136 489.2 440 55.0
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 3.4e-136 489.2 356 64.6
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 4.4e-136 488.8 439 54.9
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 2.2e-135 486.5 429 56.2
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 3.2e-134 482.6 414 56.5
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.3e-132 477.2 456 53.3
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 5.0e-132 475.3 365 60.3
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 4.3e-131 472.2 331 65.9
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 2.0e-128 463.4 375 58.9
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 2.7e-125 453.0 424 54.0
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 2.3e-124 449.9 413 53.8
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 1.5e-123 447.2 439 52.2
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.6e-122 443.7 383 56.1
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 2.1e-122 443.4 452 50.0
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 8.1e-122 441.4 383 55.9
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 5.2e-121 438.7 444 51.1
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 6.4e-119 431.8 343 60.6
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 1.8e-113 413.7 424 49.3
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 2.4e-113 413.3 447 48.3
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 1.1e-110 404.4 331 59.5
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 7.1e-110 401.7 429 49.7
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 1.5e-107 394.0 651 36.3
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 4.3e-107 392.5 389 51.2
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 1.3e-103 380.9 423 47.0
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 6.4e-103 378.6 437 46.0
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 3.6e-98 362.8 331 55.3
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 2.6e-96 356.7 496 41.5
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 3.8e-95 352.8 419 45.8
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 3.2e-94 349.7 287 58.5
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 6.0e-93 345.5 445 43.1
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 6.7e-92 342.0 287 56.8
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 2.5e-91 340.1 374 47.1
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 1.2e-88 331.3 288 54.9
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 5.8e-88 328.9 287 54.4
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 1.0e-87 328.2 279 55.6
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 1.7e-87 327.4 437 42.8
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 1.7e-87 327.4 338 49.1
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 2.2e-87 327.0 282 56.4
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 3.3e-83 313.2 287 54.0
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 2.5e-75 287.0 437 39.8
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 2.8e-74 283.5 437 37.8
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 2.9e-71 273.5 206 64.1
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 3.8e-71 273.1 181 70.7
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 3.0e-68 263.5 408 38.7
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 3.7e-66 256.5 424 36.8
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 9.4e-62 241.9 397 38.3
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 5.1e-60 236.1 412 35.2
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 5.5e-54 216.1 152 65.8
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 5.7e-51 206.1 183 55.2
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 3.2e-46 190.3 148 59.5
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 3.2e-46 190.3 148 59.5
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 2.7e-45 187.2 146 58.2
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 4.7e-45 186.4 148 58.8
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 1.8e-44 184.5 284 35.6
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 8.0e-37 159.1 120 62.5
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 3.0e-36 157.1 120 61.7
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 1.3e-34 151.8 117 59.8
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 7.0e-33 146.0 120 57.5
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 2.7e-32 144.1 117 57.3
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 6.6e-31 139.4 90 72.2
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 3.6e-29 133.7 121 57.0
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 4.3e-22 110.2 167 40.7
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.2e-21 108.6 86 64.0
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 6.4e-18 96.3 87 51.7
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 2.4e-17 94.4 94 50.0
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 9.2e-17 92.4 60 68.3
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 2.0e-16 91.3 103 46.6
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 4.4e-11 73.6 102 41.2
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 2.9e-10 70.9 59 52.5
CAN.G1725.1 Capsicum annuum HOM05D005203 ORTHO05D006383 1.2e-08 65.5 64 43.8
GSVIVG01002825001 Vitis vinifera HOM05D005203 ORTHO05D006383 2.7e-08 64.3 69 40.6
PGSC0003DMG401014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 3.5e-08 63.9 64 42.2
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.0e-07 62.4 45 66.7
EL10Ac1g01043 Beta vulgaris HOM05D005203 ORTHO05D006383 1.3e-07 62.0 33 72.7


User provided reference genes

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