Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 5.8e-75 284.3 156 100.0
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 1.4e-49 199.9 147 70.7
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 5.5e-49 198.0 141 70.9
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 3.0e-47 192.2 148 68.2
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 6.7e-47 191.0 145 65.5
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 2.0e-43 179.5 145 62.8
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 2.0e-43 179.5 149 59.7
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 1.0e-42 177.2 154 60.4
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 1.3e-42 176.8 156 57.1
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 1.7e-42 176.4 153 58.8
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 1.7e-42 176.4 146 59.6
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.7e-42 176.4 147 58.5
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 2.9e-42 175.6 155 60.0
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 2.9e-42 175.6 153 59.5
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 2.9e-42 175.6 146 60.3
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 2.9e-42 175.6 140 62.1
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 6.5e-42 174.5 141 62.4
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 6.5e-42 174.5 146 58.9
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 8.4e-42 174.1 150 59.3
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 1.1e-41 173.7 155 59.4
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.1e-41 173.7 156 56.4
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.9e-41 172.9 153 56.2
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 2.5e-41 172.6 143 58.7
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.5e-41 172.6 142 62.0
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 2.5e-41 172.6 138 60.1
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 2.5e-41 172.6 138 60.1
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 3.2e-41 172.2 156 56.4
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 4.2e-41 171.8 153 59.5
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 4.2e-41 171.8 151 58.3
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.2e-41 171.8 142 59.9
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.2e-41 171.8 139 61.9
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 4.2e-41 171.8 156 55.8
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 4.2e-41 171.8 143 59.4
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 5.5e-41 171.4 149 59.1
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 7.1e-41 171.0 148 59.5
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 7.1e-41 171.0 151 60.9
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 9.3e-41 170.6 151 58.9
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 9.3e-41 170.6 156 59.0
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-40 170.2 142 59.9
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 1.2e-40 170.2 145 62.1
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 1.2e-40 170.2 151 56.3
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 1.2e-40 170.2 142 60.6
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 2.1e-40 169.5 149 60.4
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 2.1e-40 169.5 155 56.8
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 2.7e-40 169.1 138 61.6
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 2.7e-40 169.1 138 61.6
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 2.7e-40 169.1 138 61.6
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 2.7e-40 169.1 138 58.7
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 2.7e-40 169.1 148 56.8
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 3.5e-40 168.7 146 60.3
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 3.5e-40 168.7 148 54.7
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 4.6e-40 168.3 135 60.0
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.0e-40 167.9 142 57.7
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.0e-40 167.9 142 58.5
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 6.0e-40 167.9 151 55.6
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 7.9e-40 167.5 141 59.6
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 7.9e-40 167.5 154 54.5
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 1.0e-39 167.2 153 56.9
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 1.0e-39 167.2 138 60.1
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.0e-39 167.2 143 59.4
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 1.3e-39 166.8 142 61.3
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.3e-39 166.8 152 55.9
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 1.8e-39 166.4 151 56.3
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 1.8e-39 166.4 137 59.1
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 2.3e-39 166.0 151 56.3
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.3e-39 166.0 142 58.5
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 2.3e-39 166.0 154 53.9
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 2.3e-39 166.0 154 55.2
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 3.9e-39 165.2 144 59.7
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 3.9e-39 165.2 138 60.9
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 3.9e-39 165.2 142 60.6
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 5.1e-39 164.9 151 56.3
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 5.1e-39 164.9 139 58.3
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 5.1e-39 164.9 153 53.6
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 5.1e-39 164.9 143 58.0
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 6.7e-39 164.5 134 60.4
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 6.7e-39 164.5 157 53.5
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 6.7e-39 164.5 135 60.0
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 8.7e-39 164.1 151 55.6
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 8.7e-39 164.1 150 56.7
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 8.7e-39 164.1 151 55.6
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 8.7e-39 164.1 151 55.6
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 8.7e-39 164.1 138 60.1
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 1.1e-38 163.7 147 56.5
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 1.5e-38 163.3 151 55.6
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 1.5e-38 163.3 151 55.6
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 1.5e-38 163.3 151 55.6
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 1.9e-38 162.9 151 55.0
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 1.9e-38 162.9 135 57.0
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 1.9e-38 162.9 135 57.0
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 1.9e-38 162.9 135 60.0
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 1.9e-38 162.9 152 55.3
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 2.5e-38 162.5 184 50.5
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 2.5e-38 162.5 154 54.5
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 4.3e-38 161.8 149 55.0
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 4.3e-38 161.8 149 55.0
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 5.7e-38 161.4 139 57.6
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 9.7e-38 160.6 138 58.0
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.2e-37 159.5 148 58.1
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.8e-37 159.1 142 57.0
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.2e-37 157.5 142 57.0
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 8.2e-37 157.5 123 63.4
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 1.8e-36 156.4 115 67.8
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 1.8e-36 156.4 115 67.8
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 1.8e-36 156.4 118 65.3
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 3.1e-36 155.6 158 51.9
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 4.1e-36 155.2 117 65.8
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 4.1e-36 155.2 115 67.8
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 4.1e-36 155.2 150 52.0
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 5.3e-36 154.8 120 62.5
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 6.9e-36 154.5 130 60.8
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 6.9e-36 154.5 129 59.7
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 6.9e-36 154.5 115 67.0
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 6.9e-36 154.5 119 65.5
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.0e-35 152.9 142 55.6
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 4.5e-35 151.8 132 59.1
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 4.5e-35 151.8 115 66.1
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 5.9e-35 151.4 115 61.7
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 7.7e-35 151.0 115 65.2
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 1.0e-34 150.6 115 64.3
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 1.0e-34 150.6 115 65.2
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.7e-34 149.8 136 52.2
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 1.7e-34 149.8 130 54.6
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 2.2e-34 149.4 127 59.1
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 2.9e-34 149.1 152 52.6
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 3.8e-34 148.7 130 56.9
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 3.8e-34 148.7 139 55.4
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 8.5e-34 147.5 180 45.0
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.2e-33 145.2 114 63.2
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 5.5e-33 144.8 132 56.1
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.1e-32 142.9 127 58.3
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 7.9e-32 141.0 147 51.7
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.8e-31 139.8 162 45.7
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 8.8e-31 137.5 108 60.2
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 8.8e-31 137.5 108 60.2
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 2.5e-30 136.0 81 77.8
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 4.8e-29 131.7 165 45.5
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 6.3e-29 131.3 143 48.3
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 6.5e-26 121.3 135 44.4
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 1.9e-25 119.8 161 42.2
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 4.2e-25 118.6 99 62.6
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 3.3e-22 109.0 88 61.4
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 7.4e-22 107.8 85 63.5
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 1.1e-20 104.0 96 61.5
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 9.1e-20 100.9 133 42.1
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 1.3e-18 97.1 198 32.8
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 1.9e-17 93.2 135 37.0
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 2.1e-16 89.7 75 54.7
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 4.7e-16 88.6 69 60.9
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 8.0e-16 87.8 71 64.8
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 8.0e-16 87.8 71 64.8
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 5.2e-15 85.1 71 62.0
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 2.0e-14 83.2 59 62.7
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 3.3e-14 82.4 66 57.6
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.2e-13 79.7 59 61.0
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 2.2e-13 79.7 134 35.8
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.4e-12 77.0 63 58.7
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 1.8e-12 76.6 65 63.1
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.0e-07 60.8 73 49.3
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 6.7e-07 58.2 73 47.9
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 6.7e-07 58.2 46 54.3
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.0e-06 56.6 53 47.2


User provided reference genes

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