Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 1.2e-272 942.6 483 100.0
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 3.0e-130 469.5 503 52.9
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 7.7e-118 428.3 493 46.9
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 1.7e-117 427.2 485 48.5
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 3.8e-117 426.0 486 47.3
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 6.5e-117 425.2 478 47.9
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 6.5e-117 425.2 484 47.7
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 2.5e-116 423.3 500 46.4
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 9.4e-116 421.4 508 45.7
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 4.7e-115 419.1 472 51.1
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 6.1e-115 418.7 495 47.7
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.0e-114 417.9 501 46.7
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 3.0e-114 416.4 489 48.3
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 5.2e-114 415.6 507 45.8
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 6.7e-114 415.2 501 45.3
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 6.7e-114 415.2 493 44.8
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-113 414.5 498 45.8
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 1.5e-113 414.1 489 48.1
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 2.0e-113 413.7 505 46.1
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 3.3e-113 412.9 508 44.9
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 7.4e-113 411.8 490 46.1
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 7.4e-113 411.8 501 44.7
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 2.8e-112 409.8 486 47.9
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 6.3e-112 408.7 491 45.0
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 8.2e-112 408.3 498 45.2
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 2.4e-111 406.8 466 47.0
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 2.4e-111 406.8 491 45.8
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 4.1e-111 406.0 504 47.0
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 7.0e-111 405.2 504 45.0
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 7.0e-111 405.2 504 45.0
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 1.2e-110 404.4 497 46.5
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 1.6e-110 404.1 509 43.2
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 2.0e-110 403.7 500 44.0
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 2.0e-110 403.7 506 44.3
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 3.5e-110 402.9 493 46.5
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 4.5e-110 402.5 503 44.1
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 5.9e-110 402.1 508 43.9
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 2.2e-109 400.2 490 45.3
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 2.2e-109 400.2 501 44.3
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 2.2e-109 400.2 506 43.9
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 2.9e-109 399.8 504 43.7
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 3.8e-109 399.4 504 43.7
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 5.0e-109 399.1 492 45.9
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 5.0e-109 399.1 495 45.1
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 6.5e-109 398.7 496 45.8
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 8.5e-109 398.3 497 44.7
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 8.5e-109 398.3 497 45.1
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 8.5e-109 398.3 503 46.5
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 1.9e-108 397.1 502 44.6
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 5.5e-108 395.6 499 44.1
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 5.5e-108 395.6 499 44.1
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 5.5e-108 395.6 504 43.5
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 9.4e-108 394.8 520 43.7
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 2.1e-107 393.7 501 42.5
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 4.7e-107 392.5 511 43.6
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 4.7e-107 392.5 513 44.6
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 1.0e-106 391.3 497 44.7
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 1.8e-106 390.6 499 42.5
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.3e-106 390.2 505 43.6
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 3.0e-106 389.8 492 43.7
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 3.0e-106 389.8 499 43.3
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 3.0e-106 389.8 512 44.7
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 4.0e-106 389.4 452 46.2
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 6.7e-106 388.7 503 43.9
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 6.7e-106 388.7 491 44.4
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 6.7e-106 388.7 493 43.6
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 4.4e-105 386.0 503 41.9
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 7.5e-105 385.2 499 42.9
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 7.5e-105 385.2 486 44.0
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 9.7e-105 384.8 493 45.2
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 1.7e-104 384.0 512 42.6
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 4.8e-104 382.5 497 44.3
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 1.1e-103 381.3 494 44.1
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 1.1e-103 381.3 503 41.9
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 2.4e-103 380.2 503 41.6
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 1.7e-101 374.0 469 44.6
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 2.2e-101 373.6 576 40.8
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 1.5e-100 370.9 509 41.7
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 2.1e-99 367.1 491 43.8
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 5.2e-98 362.5 541 40.1
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.7e-96 357.5 483 41.0
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 6.3e-96 355.5 426 46.2
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 4.1e-95 352.8 427 45.7
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 4.5e-94 349.4 488 43.2
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 1.7e-93 347.4 454 43.8
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 2.1e-91 340.5 492 40.7
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 2.8e-91 340.1 477 41.7
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 4.7e-91 339.3 514 40.9
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 3.0e-90 336.7 481 41.8
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 8.9e-90 335.1 448 43.1
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 2.0e-89 334.0 450 43.1
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 1.3e-88 331.3 364 47.5
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.4e-87 327.8 404 45.0
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.2e-86 324.7 389 47.3
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 1.3e-85 321.2 436 43.1
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 9.5e-84 315.1 385 45.5
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.0e-82 311.6 367 48.5
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 6.4e-80 302.4 360 48.1
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 3.5e-78 296.6 379 45.4
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 7.8e-78 295.4 476 40.1
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 6.6e-77 292.4 391 43.2
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 4.3e-76 289.7 464 38.8
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.0e-73 280.8 477 38.2
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 2.2e-72 277.3 336 46.4
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 2.4e-71 273.9 583 34.5
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 9.2e-71 271.9 346 43.6
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 3.5e-70 270.0 480 35.8
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 4.6e-70 269.6 443 37.5
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.4e-66 258.1 355 41.1
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 1.3e-64 251.5 296 45.6
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 1.1e-63 248.4 374 40.1
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 5.1e-61 239.6 316 42.4
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 7.3e-60 235.7 228 54.8
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 4.0e-58 229.9 324 41.7
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 2.0e-57 227.6 284 45.1
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 2.6e-57 227.3 259 45.6
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.7e-56 224.6 240 48.8
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 1.6e-54 218.0 256 47.3
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 1.3e-53 214.9 487 35.3
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 5.1e-53 213.0 365 38.6
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 8.7e-53 212.2 240 44.6
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.4e-50 204.1 270 42.6
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 1.4e-47 194.9 351 37.3
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 5.4e-47 193.0 327 38.2
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-44 185.3 240 43.8
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 4.3e-44 183.3 178 52.2
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.2e-40 171.0 382 32.2
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 9.3e-39 165.6 455 30.8
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 5.6e-36 156.4 160 47.5
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.3e-35 155.2 394 31.0
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 4.8e-35 153.3 156 53.8
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 6.2e-35 152.9 170 45.3
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.2e-32 144.4 216 38.4
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.9e-32 143.3 189 43.4
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 7.1e-31 139.4 242 38.8
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 9.3e-31 139.0 599 26.4
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 2.7e-30 137.5 204 39.7
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 4.6e-30 136.7 361 28.3
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-28 131.3 206 42.2
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 2.1e-27 127.9 165 44.8
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 4.8e-27 126.7 188 39.4
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 2.9e-24 117.5 150 43.3
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 2.5e-20 104.4 121 47.1
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 3.3e-20 104.0 121 47.1
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 1.6e-19 101.7 121 45.5
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 2.8e-19 100.9 105 50.5
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 2.9e-16 90.9 82 51.2
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 3.0e-13 80.9 139 31.7
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 5.7e-12 76.6 95 43.2
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 4.8e-11 73.6 124 39.5
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-10 72.4 87 43.7
Cfa026814 Carpinus fangiana HOM05D004308 ORTHO05D005139 2.4e-10 71.2 248 28.2
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 6.9e-10 69.7 84 47.6
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 7.7e-09 66.2 84 41.7
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 7.7e-09 66.2 61 42.6
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.9e-08 64.3 81 42.0
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 3.2e-07 60.8 64 51.6
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.6e-06 58.5 85 38.8
CBR_g25885 Chara braunii HOM05D004308 ORTHO05D134275 4.7e-06 57.0 59 47.5


User provided reference genes

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