Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 6.8e-299 1030.0 566 100.0
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 2.2e-55 221.1 551 35.6
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 2.2e-55 221.1 551 35.6
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 2.2e-39 167.9 545 30.1
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 9.2e-38 162.5 515 30.7
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 3.0e-36 157.5 542 27.9
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 6.6e-36 156.4 510 30.0
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 1.5e-35 155.2 474 31.9
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 1.9e-35 154.8 512 30.3
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 3.3e-35 154.1 510 29.6
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 1.2e-34 152.1 510 29.8
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 2.1e-34 151.4 516 30.4
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.1e-34 151.4 511 29.2
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.1e-34 151.4 537 29.8
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 3.6e-34 150.6 508 31.1
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 8.1e-34 149.4 511 29.2
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 1.1e-33 149.1 504 29.4
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.4e-33 148.7 504 29.8
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 1.8e-33 148.3 535 29.2
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 1.8e-33 148.3 510 30.0
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 8.9e-33 146.0 503 30.0
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 1.5e-32 145.2 168 45.2
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 2.0e-32 144.8 509 29.9
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 3.4e-32 144.1 543 28.7
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 3.4e-32 144.1 509 28.1
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 3.4e-32 144.1 203 42.9
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 5.8e-32 143.3 203 43.3
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 9.9e-32 142.5 198 39.9
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 9.9e-32 142.5 512 28.5
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 1.7e-31 141.7 195 42.1
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 2.2e-31 141.4 209 40.7
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 6.4e-31 139.8 477 30.4
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 1.9e-30 138.3 529 28.7
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 4.1e-30 137.1 507 28.2
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 5.4e-30 136.7 279 34.8
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 7.1e-30 136.3 477 28.3
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 9.2e-30 136.0 243 34.2
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 9.2e-30 136.0 518 28.8
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 1.2e-29 135.6 539 28.0
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 1.6e-29 135.2 537 27.7
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 1.6e-29 135.2 535 28.6
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 2.1e-29 134.8 536 27.8
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 3.5e-29 134.0 278 34.2
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 6.0e-29 133.3 519 27.4
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 6.0e-29 133.3 537 28.1
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 6.0e-29 133.3 534 26.8
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 7.8e-29 132.9 165 43.0
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 7.8e-29 132.9 300 30.7
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 1.0e-28 132.5 196 39.3
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 1.3e-28 132.1 251 37.1
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 2.3e-28 131.3 245 33.9
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 2.3e-28 131.3 218 37.6
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 2.3e-28 131.3 541 26.8
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 2.3e-28 131.3 508 29.3
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 2.3e-28 131.3 511 28.8
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 3.9e-28 130.6 543 26.0
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 5.1e-28 130.2 143 44.8
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 6.6e-28 129.8 245 32.2
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 6.6e-28 129.8 506 28.1
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 8.6e-28 129.4 508 28.7
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 1.1e-27 129.0 483 28.0
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 1.5e-27 128.6 493 28.8
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 2.5e-27 127.9 164 41.5
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 2.5e-27 127.9 506 27.1
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 1.2e-26 125.6 529 27.6
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 1.2e-26 125.6 502 27.1
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 1.6e-26 125.2 245 32.7
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 1.6e-26 125.2 239 33.1
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 1.6e-26 125.2 514 28.6
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 2.1e-26 124.8 242 36.0
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 2.8e-26 124.4 234 35.0
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 4.7e-26 123.6 511 25.6
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 4.7e-26 123.6 511 25.6
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 4.7e-26 123.6 542 27.7
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 6.2e-26 123.2 515 26.8
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 8.1e-26 122.9 542 25.3
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 8.1e-26 122.9 542 25.3
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 1.1e-25 122.5 263 32.7
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 1.4e-25 122.1 504 28.0
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 2.4e-25 121.3 585 27.2
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 6.9e-25 119.8 542 25.1
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 9.0e-25 119.4 503 27.6
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 3.4e-24 117.5 473 27.1
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 3.4e-24 117.5 514 26.1
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 3.4e-24 117.5 507 26.6
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 4.4e-24 117.1 223 34.5
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 7.6e-24 116.3 502 26.3
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 7.6e-24 116.3 512 25.8
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 3.8e-23 114.0 502 26.1
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 3.8e-23 114.0 503 27.0
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 3.8e-23 114.0 501 26.7
MBI01_g13570_MAGBIO Magnolia biondii HOM05D006752 ORTHO05D008597 4.9e-23 113.6 599 24.2
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 8.4e-23 112.8 482 28.0
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 1.1e-22 112.5 393 29.8
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 1.9e-22 111.7 469 27.9
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 1.9e-22 111.7 515 26.4
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 1.6e-21 108.6 550 27.5
Sc08g0007030 Simmondsia chinensis HOM05D006752 ORTHO05D008597 1.0e-20 105.9 178 36.5
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 2.3e-20 104.8 213 34.3
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 2.3e-20 104.8 300 30.0
Cc08_g07650 Coffea canephora HOM05D006752 ORTHO05D008597 1.2e-16 92.4 120 41.7
MD00G1026200 Malus domestica HOM05D006752 ORTHO05D008597 3.8e-15 87.4 101 42.6
MD02G1041600 Malus domestica HOM05D006752 ORTHO05D008597 1.3e-12 79.0 79 45.6
MD00G1027300 Malus domestica HOM05D006752 ORTHO05D008597 1.9e-11 75.1 69 47.8
CSS0032277 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 3.3e-11 74.3 76 48.7
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 1.6e-10 72.0 121 33.1
Zm00001eb336920 Zea mays HOM05D006752 ORTHO05D008597 2.1e-10 71.6 137 44.5
MCO09G826 Micromonas commoda HOM05D006752 ORTHO05D008597 2.8e-10 71.2 555 25.8
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 8.1e-10 69.7 245 29.4
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 1.8e-09 68.6 159 34.0
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.4e-09 68.2 195 30.3
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.4e-09 68.2 190 31.6
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 3.1e-09 67.8 196 30.6
MD02G1038900 Malus domestica HOM05D006752 ORTHO05D008597 3.1e-09 67.8 67 49.3
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 4.0e-09 67.4 171 29.2
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 5.3e-09 67.0 163 32.5
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 5.3e-09 67.0 163 32.5
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 1.5e-08 65.5 182 31.3
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.0e-08 65.1 135 34.1
CsaV3_1G030960 Cucumis sativus L. HOM05D006752 ORTHO05D008597 3.4e-08 64.3 130 35.4
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 4.5e-08 63.9 349 26.1
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 4.5e-08 63.9 166 32.5
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 5.8e-08 63.5 237 28.7
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 5.8e-08 63.5 125 32.8
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 7.6e-08 63.2 122 34.4
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 9.9e-08 62.8 496 24.4
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 3.8e-07 60.8 178 30.3
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 3.8e-07 60.8 211 28.9
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 4.9e-07 60.5 240 29.2
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 4.9e-07 60.5 163 30.1
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 6.4e-07 60.1 200 29.0
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 6.4e-07 60.1 181 30.4
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 6.4e-07 60.1 185 29.2
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 8.4e-07 59.7 240 28.3
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 1.1e-06 59.3 244 27.5
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 1.1e-06 59.3 231 28.6
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 1.4e-06 58.9 163 31.3
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 2.4e-06 58.2 163 30.1
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 2.4e-06 58.2 163 29.4
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 3.2e-06 57.8 225 28.0
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 3.2e-06 57.8 114 33.3
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 3.2e-06 57.8 169 33.1
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 3.2e-06 57.8 163 28.8
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 4.2e-06 57.4 124 33.1
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 4.2e-06 57.4 125 34.4
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 4.2e-06 57.4 224 27.7
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 5.5e-06 57.0 241 28.2
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 5.5e-06 57.0 203 29.1
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 5.5e-06 57.0 203 30.0
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 7.1e-06 56.6 232 28.4
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 7.1e-06 56.6 138 31.9
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 7.1e-06 56.6 229 26.2
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 7.1e-06 56.6 272 24.3
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 7.1e-06 56.6 127 35.4
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 9.3e-06 56.2 122 31.1
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 9.3e-06 56.2 247 28.3
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 9.3e-06 56.2 164 28.7


User provided reference genes

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