Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 1.4e-128 463.0 237 100.0
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 2.3e-75 286.2 222 63.1
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 2.6e-74 282.7 228 60.5
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 2.6e-74 282.7 228 60.5
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 2.6e-74 282.7 222 60.8
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 2.6e-74 282.7 230 62.2
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 4.4e-74 282.0 230 61.3
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 2.2e-73 279.6 232 58.2
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 6.3e-73 278.1 228 59.6
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 6.3e-73 278.1 232 58.6
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 1.1e-72 277.3 232 57.8
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 1.4e-72 276.9 228 59.2
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 2.4e-72 276.2 234 57.3
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 3.1e-72 275.8 228 57.9
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 4.1e-72 275.4 225 60.0
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 1.2e-71 273.9 228 57.5
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 1.6e-71 273.5 225 58.7
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 2.6e-71 272.7 225 58.7
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 3.5e-71 272.3 232 57.3
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 4.5e-71 271.9 219 61.2
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 4.5e-71 271.9 230 57.0
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 7.7e-71 271.2 232 56.0
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 1.3e-70 270.4 232 56.9
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.3e-70 270.4 228 57.0
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 2.2e-70 269.6 230 57.8
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 3.8e-70 268.9 230 57.8
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 3.8e-70 268.9 225 58.7
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 3.8e-70 268.9 225 58.7
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 1.5e-69 266.9 231 56.7
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 1.5e-69 266.9 228 55.7
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 1.9e-69 266.5 232 56.0
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 1.9e-69 266.5 225 59.1
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 7.2e-69 264.6 234 55.1
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 1.2e-68 263.8 227 55.9
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 2.1e-68 263.1 227 56.4
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 2.1e-68 263.1 231 56.3
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 2.1e-68 263.1 223 57.4
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 3.6e-68 262.3 228 57.0
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 6.1e-68 261.5 220 58.2
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 6.1e-68 261.5 227 55.1
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 1.0e-67 260.8 228 56.6
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 1.0e-67 260.8 227 55.9
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.0e-67 260.8 223 58.3
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.8e-67 260.0 230 56.1
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.8e-67 260.0 230 56.1
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 1.8e-67 260.0 231 56.3
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 2.3e-67 259.6 220 57.7
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 3.0e-67 259.2 223 57.4
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 4.0e-67 258.8 225 56.9
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 6.8e-67 258.1 223 57.4
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.5e-66 256.9 229 54.6
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 2.6e-66 256.1 227 55.9
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 4.4e-66 255.4 233 54.5
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 4.4e-66 255.4 231 55.8
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 7.5e-66 254.6 230 53.9
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 7.5e-66 254.6 227 55.5
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 7.5e-66 254.6 227 55.5
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 9.7e-66 254.2 233 54.5
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 9.7e-66 254.2 220 57.7
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.3e-65 253.8 230 53.5
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 1.7e-65 253.4 230 53.9
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.7e-65 253.4 233 53.2
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 2.2e-65 253.1 219 56.2
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 2.2e-65 253.1 231 54.5
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 2.2e-65 253.1 231 54.5
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 2.2e-65 253.1 222 57.2
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 2.8e-65 252.7 227 55.1
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 2.8e-65 252.7 224 55.8
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 3.7e-65 252.3 203 61.6
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 1.4e-64 250.4 223 54.7
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 3.1e-64 249.2 220 54.5
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 3.1e-64 249.2 220 55.9
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.1e-64 249.2 224 56.7
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 7.0e-64 248.1 252 50.0
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 7.0e-64 248.1 219 54.8
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 9.1e-64 247.7 225 55.1
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 9.1e-64 247.7 204 59.3
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 9.1e-64 247.7 203 60.1
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 1.2e-63 247.3 214 57.0
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.2e-63 247.3 225 55.6
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 2.0e-63 246.5 227 53.7
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 2.0e-63 246.5 207 60.9
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 2.7e-63 246.1 212 58.0
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 3.5e-63 245.7 227 55.1
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 3.5e-63 245.7 274 48.2
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 8.5e-62 241.1 232 53.4
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 1.9e-61 240.0 221 55.2
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 5.5e-61 238.4 264 47.3
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 4.7e-60 235.3 205 57.1
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 1.4e-59 233.8 195 58.5
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 1.8e-59 233.4 193 57.5
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 1.8e-59 233.4 252 48.4
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 1.8e-59 233.4 202 57.4
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 2.3e-59 233.0 206 58.7
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 3.0e-59 232.6 224 53.6
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 4.0e-59 232.3 220 53.6
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 8.8e-59 231.1 227 52.4
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 1.2e-58 230.7 229 50.7
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 1.5e-58 230.3 229 50.7
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 2.6e-58 229.6 231 50.2
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 3.4e-58 229.2 188 61.7
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 9.8e-58 227.6 229 49.8
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 9.8e-58 227.6 229 49.8
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 1.3e-57 227.3 227 50.7
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 1.3e-57 227.3 227 50.7
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 2.2e-57 226.5 229 49.3
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 4.8e-57 225.3 225 51.1
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 1.1e-56 224.2 195 59.0
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.6e-55 220.3 175 60.6
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 5.9e-55 218.4 223 52.5
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 2.9e-54 216.1 166 65.7
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.9e-54 216.1 230 50.9
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 3.8e-54 215.7 221 50.2
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 1.9e-53 213.4 230 49.1
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 1.0e-51 207.6 186 55.4
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.3e-51 206.5 234 48.7
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 5.2e-51 205.3 189 55.0
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 8.3e-49 198.0 169 56.8
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 1.5e-45 187.2 165 56.4
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 1.9e-45 186.8 162 56.8
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.2e-44 184.1 235 45.1
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 4.4e-42 175.6 214 47.7
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 7.5e-42 174.9 206 48.5
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 3.2e-40 169.5 152 55.3
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 5.6e-37 158.7 150 52.7
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 6.4e-33 145.2 129 57.4
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 3.5e-31 139.4 200 38.5
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 4.6e-31 139.0 131 53.4
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.0e-30 137.9 131 53.4
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 8.6e-30 134.8 210 35.2
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 1.9e-29 133.7 231 34.6
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 1.2e-28 131.0 111 59.5
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 3.1e-27 126.3 105 60.0
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 8.9e-27 124.8 99 57.6
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 3.4e-26 122.9 258 34.1
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 2.2e-25 120.2 232 31.9
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 2.9e-25 119.8 231 33.3
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 2.7e-23 113.2 129 47.3
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 6.0e-23 112.1 102 51.0
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 1.7e-22 110.5 111 54.1
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 3.9e-22 109.4 76 64.5
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 1.6e-20 104.0 218 32.6
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 1.6e-20 104.0 218 32.6
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 4.2e-16 89.4 81 55.6
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 2.7e-15 86.7 200 30.5
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 8.7e-14 81.6 100 47.0
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 2.1e-12 77.0 56 62.5
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 1.2e-10 71.2 76 47.4
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 2.2e-09 67.0 65 53.8
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 2.7e-07 60.1 52 55.8
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 4.6e-07 59.3 49 57.1
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 7.9e-07 58.5 45 60.0


User provided reference genes

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