Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 0.0e+00 1385.2 923 100.0
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 4.0e-99 367.1 851 46.3
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 4.2e-96 357.1 855 42.6
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 9.3e-80 302.8 726 43.8
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 2.1e-79 301.6 831 39.0
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 6.7e-78 296.6 724 42.0
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 2.5e-77 294.7 771 40.6
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 9.6e-77 292.7 757 45.3
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 9.6e-77 292.7 790 41.0
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 2.1e-76 291.6 725 41.7
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 3.4e-74 284.3 786 39.8
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 2.2e-73 281.6 840 39.6
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 2.5e-72 278.1 732 40.2
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 2.5e-72 278.1 741 40.8
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 1.2e-71 275.8 726 40.8
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 1.6e-71 275.4 757 44.5
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 2.7e-71 274.6 754 44.0
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 4.6e-71 273.9 758 41.4
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 3.9e-70 270.8 737 41.2
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 3.9e-70 270.8 836 41.1
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 1.5e-69 268.9 824 40.8
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 7.4e-69 266.5 730 42.1
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 9.7e-69 266.2 834 36.0
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 1.3e-68 265.8 757 39.9
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 1.3e-68 265.8 837 41.5
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 1.6e-68 265.4 702 41.2
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 4.8e-68 263.8 722 40.6
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 4.8e-68 263.8 722 40.6
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 6.3e-68 263.5 839 41.1
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 1.1e-67 262.7 725 33.5
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 1.8e-67 261.9 728 43.7
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 3.1e-67 261.2 811 42.7
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 4.1e-67 260.8 822 38.1
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 4.1e-67 260.8 748 40.6
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 5.3e-67 260.4 681 41.7
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 6.9e-67 260.0 735 45.0
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 1.2e-66 259.2 822 38.0
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 1.2e-66 259.2 823 37.1
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 1.2e-66 259.2 728 43.5
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 1.5e-66 258.8 721 39.5
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 1.5e-66 258.8 721 39.5
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 1.5e-66 258.8 731 44.5
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.5e-66 258.8 860 37.8
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 1.5e-66 258.8 832 38.1
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 3.4e-66 257.7 820 37.6
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 5.9e-66 256.9 761 38.9
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 5.9e-66 256.9 615 45.7
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 1.7e-65 255.4 731 42.8
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 8.5e-65 253.1 721 39.8
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 1.1e-64 252.7 704 34.2
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 1.1e-64 252.7 767 38.6
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 1.4e-64 252.3 723 38.7
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 4.2e-64 250.8 723 38.7
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 7.2e-64 250.0 823 36.9
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 2.1e-63 248.4 722 40.0
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 2.7e-63 248.1 596 43.3
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 2.7e-63 248.1 728 41.2
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 2.7e-63 248.1 604 45.5
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 2.7e-63 248.1 599 42.4
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 6.1e-63 246.9 610 43.3
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 6.1e-63 246.9 599 45.1
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 1.0e-62 246.1 607 47.3
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 1.4e-62 245.7 816 38.1
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 1.8e-62 245.4 702 42.3
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 3.0e-62 244.6 603 49.4
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 3.0e-62 244.6 628 40.6
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 3.9e-62 244.2 822 41.0
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 1.1e-61 242.7 610 43.8
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 1.9e-61 241.9 698 40.7
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 2.5e-61 241.5 598 43.6
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 3.3e-61 241.1 599 44.9
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 7.4e-61 240.0 818 40.6
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 7.4e-61 240.0 610 48.0
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 3.7e-60 237.7 829 36.7
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 1.1e-59 236.1 750 39.7
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 1.3e-57 229.2 641 32.9
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 1.3e-57 229.2 641 32.9
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 2.2e-57 228.4 726 32.8
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 3.8e-57 227.6 827 37.5
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 6.5e-57 226.9 805 38.3
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 3.2e-56 224.6 703 33.1
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 4.2e-56 224.2 865 29.9
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 5.5e-56 223.8 612 43.8
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 5.5e-56 223.8 597 42.7
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 9.4e-56 223.0 836 31.7
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 1.2e-55 222.6 691 34.2
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 3.3e-53 214.5 724 37.7
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 1.8e-51 208.8 826 37.4
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 2.6e-50 204.9 560 45.5
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 5.7e-45 187.2 892 27.9
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 1.0e-41 176.4 502 33.1
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 5.0e-41 174.1 471 46.1
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 9.4e-40 169.9 623 29.2
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 1.5e-37 162.5 278 51.8
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 2.0e-37 162.2 492 40.9
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 6.3e-36 157.1 399 42.6
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 7.7e-34 150.2 193 45.6
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 3.8e-33 147.9 511 44.4
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 7.2e-32 143.7 596 24.2
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 1.0e-22 113.2 234 52.6
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 4.0e-22 111.3 180 38.9
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 6.3e-20 104.0 209 33.5
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 1.4e-19 102.8 357 40.3
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 6.0e-10 70.9 192 24.5
CBR_g39239 Chara braunii HOM05D017423 ORTHO05D008851 5.6e-08 64.3 62 50.0
PRCOL_00006441 Prasinoderma coloniale HOM05D007104 ORTHO05D008851 3.6e-07 61.6 231 25.5
MCO08G298 Micromonas commoda HOM05D007104 ORTHO05D008851 6.2e-07 60.8 170 27.6
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 1.1e-06 60.1 95 34.7


User provided reference genes

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