Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 0.0e+00 1534.2 1133 100.0
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.7e-184 651.0 1136 64.3
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 3.1e-53 214.9 728 60.4
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 3.5e-44 184.9 794 57.8
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 4.2e-42 177.9 284 39.1
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 2.1e-41 175.6 721 61.4
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 2.4e-37 162.2 238 41.2
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 3.1e-37 161.8 238 41.6
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 3.1e-37 161.8 694 48.1
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 5.4e-37 161.0 239 43.1
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 7.0e-37 160.6 238 41.2
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 7.0e-37 160.6 238 41.2
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.2e-36 159.8 238 41.2
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 1.6e-36 159.5 741 51.3
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 2.7e-36 158.7 283 39.6
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 3.5e-36 158.3 728 60.2
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 4.5e-36 157.9 238 43.3
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 5.9e-36 157.5 728 61.0
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 7.8e-36 157.1 697 60.0
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 1.7e-35 156.0 703 47.2
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 2.9e-35 155.2 699 61.5
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 5.0e-35 154.5 728 59.5
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 8.6e-35 153.7 691 53.5
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 1.1e-34 153.3 697 61.7
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 1.1e-34 153.3 695 62.3
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.9e-34 152.5 679 57.1
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 2.5e-34 152.1 693 47.5
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 3.3e-34 151.8 279 38.0
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 3.3e-34 151.8 804 50.4
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 5.6e-34 151.0 699 56.2
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 5.6e-34 151.0 699 61.2
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 1.6e-33 149.4 243 39.9
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 1.6e-33 149.4 702 51.7
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 2.1e-33 149.1 739 46.4
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 2.1e-33 149.1 695 55.1
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 2.1e-33 149.1 695 62.0
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 2.8e-33 148.7 1092 42.9
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 4.7e-33 147.9 702 45.0
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 1.0e-32 146.7 715 55.7
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 3.0e-32 145.2 1080 47.1
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 3.0e-32 145.2 889 53.0
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 6.8e-32 144.1 703 56.2
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 6.8e-32 144.1 276 36.2
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 8.9e-32 143.7 241 41.1
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 1.2e-31 143.3 707 54.0
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 1.5e-31 142.9 1029 38.5
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 2.0e-31 142.5 692 60.5
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 2.0e-31 142.5 696 61.6
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 2.6e-31 142.1 243 40.7
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 2.6e-31 142.1 697 61.0
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 3.4e-31 141.7 249 39.4
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 4.4e-31 141.4 243 41.2
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 4.4e-31 141.4 1092 46.9
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 4.4e-31 141.4 1087 47.0
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 5.8e-31 141.0 698 55.2
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 5.8e-31 141.0 705 60.0
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 7.5e-31 140.6 281 34.9
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 7.5e-31 140.6 240 40.4
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 7.5e-31 140.6 738 53.3
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 7.5e-31 140.6 238 38.2
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 1.3e-30 139.8 703 60.6
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 1.7e-30 139.4 740 53.0
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 1.7e-30 139.4 692 55.8
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 1.7e-30 139.4 697 60.7
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 3.7e-30 138.3 283 36.4
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 4.9e-30 137.9 742 51.6
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 4.9e-30 137.9 808 54.6
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 6.4e-30 137.5 239 38.9
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 8.3e-30 137.1 742 57.5
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 8.3e-30 137.1 742 57.5
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 1.8e-29 136.0 1036 38.2
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 2.4e-29 135.6 739 57.5
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 2.4e-29 135.6 237 40.1
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 3.2e-29 135.2 707 53.7
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 5.4e-29 134.4 238 36.1
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 5.4e-29 134.4 754 46.7
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 7.0e-29 134.0 657 60.0
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 9.2e-29 133.7 650 56.6
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 1.6e-28 132.9 941 50.1
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 2.0e-28 132.5 900 46.1
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 2.7e-28 132.1 694 55.0
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 7.8e-28 130.6 1022 41.5
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 1.0e-27 130.2 245 36.7
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 1.7e-27 129.4 281 32.7
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 1.7e-27 129.4 1078 41.4
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 2.3e-27 129.0 236 38.6
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 8.6e-27 127.1 240 37.5
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 3.3e-26 125.2 244 39.3
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 5.6e-26 124.4 238 36.1
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 5.6e-26 124.4 979 48.0
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 1.2e-25 123.2 328 29.3
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 4.7e-25 121.3 764 55.5
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 6.2e-25 120.9 238 35.7
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 8.0e-25 120.6 1005 42.9
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 8.0e-25 120.6 275 37.1
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 3.1e-24 118.6 234 37.6
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 3.4e-23 115.2 183 40.4
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 1.7e-22 112.8 654 56.4
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 4.9e-22 111.3 115 45.2
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 1.1e-21 110.2 267 33.3
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 1.4e-21 109.8 104 49.0
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 2.4e-21 109.0 104 51.0
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 9.2e-21 107.1 100 48.0
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 1.2e-20 106.7 139 41.0
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 1.6e-20 106.3 275 32.0
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 4.6e-20 104.8 100 48.0
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 1.3e-19 103.2 154 37.0
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 6.6e-19 100.9 993 42.9
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 1.5e-18 99.8 102 45.1
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 1.6e-17 96.3 102 39.2
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 2.3e-16 92.4 100 43.0
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 5.2e-16 91.3 93 46.2
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 8.9e-16 90.5 128 41.4
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 1.5e-15 89.7 109 46.8
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 4.4e-15 88.2 92 43.5
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 5.8e-15 87.8 122 41.8
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 2.7e-12 79.0 71 47.9
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 6.6e-11 74.3 223 28.3
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 8.6e-11 73.9 113 34.5
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.5e-10 73.2 126 42.1
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 4.9e-06 58.2 88 39.8
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 8.4e-06 57.4 94 40.4
Cre06.g298300 Chlamydomonas reinhardtii HOM05D005996 ORTHO05D044233 8.4e-06 57.4 157 26.8


User provided reference genes

Program Settings