Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 2461.0 1256 100.0
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1287.7 1259 54.5
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 0.0e+00 1278.5 1292 54.4
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1183.3 1271 50.1
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1179.9 1271 50.0
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1176.8 1271 49.8
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1176.4 1263 50.4
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1169.8 1267 50.0
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1168.3 1265 50.0
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1167.9 1267 50.2
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1166.0 1267 50.7
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1166.0 1267 51.3
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1165.2 1265 50.0
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1164.4 1270 49.4
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1161.0 1267 49.8
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1160.2 1270 49.7
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1158.3 1270 49.2
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1157.9 1268 50.1
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1157.5 1259 49.6
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1157.1 1258 50.4
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1156.7 1272 50.1
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1156.4 1268 49.8
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1156.0 1273 50.0
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1154.8 1270 49.3
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1154.8 1265 49.6
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1154.8 1262 49.7
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1153.7 1259 50.5
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1152.5 1270 49.3
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1152.1 1269 49.3
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1152.1 1272 49.2
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1151.3 1276 49.3
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1149.4 1263 49.5
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1148.7 1276 49.0
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1148.7 1294 49.0
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1147.9 1264 49.6
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1145.6 1270 48.8
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1144.0 1262 49.1
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1143.3 1274 50.1
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1142.9 1263 49.4
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1142.5 1266 49.6
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1140.6 1263 49.4
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1139.8 1267 49.3
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1139.4 1265 49.1
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1138.3 1268 49.0
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1138.3 1267 49.5
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1137.5 1268 49.1
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1135.6 1260 49.2
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1135.2 1281 48.6
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1134.0 1264 48.7
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1134.0 1266 49.1
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1134.0 1268 48.8
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1133.2 1261 49.7
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1131.3 1271 48.9
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1131.3 1267 48.7
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1129.4 1264 49.1
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1127.1 1271 48.6
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1126.3 1267 49.3
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1122.8 1260 48.7
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1122.8 1195 51.2
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1122.8 1318 48.0
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 0.0e+00 1120.1 1212 52.2
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1119.4 1351 46.7
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1118.6 1328 46.8
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1118.2 1264 48.8
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1116.7 1258 48.3
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1114.4 1261 47.8
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1114.4 1275 48.2
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1109.4 1257 48.6
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1109.4 1262 48.5
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1105.1 1268 48.5
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1104.0 1273 47.8
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1103.2 1256 48.2
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1101.3 1261 47.5
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1099.0 1251 48.8
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1098.6 1251 48.8
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1096.6 1323 46.2
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1092.4 1315 46.8
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1090.9 1236 48.8
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1088.9 1186 49.6
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1088.9 1268 48.3
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1087.8 1259 48.2
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1085.5 1272 47.1
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1084.3 1259 48.1
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1077.4 1200 49.2
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 8.6e-312 1074.3 1271 47.4
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 2.6e-311 1072.4 1281 46.7
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 1.7e-310 1069.7 1212 49.0
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 1.1e-309 1067.0 1325 45.7
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 6.1e-308 1061.2 1275 46.7
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 1.5e-306 1056.6 1259 47.4
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 7.4e-306 1054.3 1219 49.0
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 3.1e-304 1048.9 1237 47.8
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 7.2e-301 1037.7 1169 49.1
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 3.6e-300 1035.4 1243 47.3
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 2.0e-298 1029.6 1176 47.2
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 6.8e-291 1004.6 1256 45.5
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 2.9e-278 962.6 1259 44.2
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 1.5e-274 950.3 1017 50.6
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 8.3e-273 944.5 1032 49.4
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 2.7e-255 886.3 1039 48.3
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 2.9e-249 866.3 976 49.8
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 1.9e-248 863.6 1337 39.8
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 1.5e-242 844.0 894 50.9
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 1.3e-212 744.6 1406 37.3
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 8.5e-209 731.9 1245 37.9
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 2.2e-204 717.2 1300 36.6
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 3.1e-203 713.4 897 45.5
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 1.4e-200 704.5 802 48.3
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 1.7e-193 681.0 825 46.5
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 5.0e-193 679.5 896 44.1
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 8.5e-193 678.7 665 55.2
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 8.8e-166 589.0 1168 35.9
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 2.0e-149 534.6 533 53.5
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 1.7e-124 451.8 609 43.5
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 1.6e-122 445.3 621 40.7
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.2e-116 424.9 324 67.9
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 5.4e-115 420.2 430 51.6
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 6.0e-114 416.8 473 49.3
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 2.8e-111 407.9 646 40.2
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.8e-87 328.2 336 50.9
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 4.1e-78 297.7 706 33.4
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 8.8e-73 280.0 287 50.5
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.2e-66 259.6 241 54.4
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 1.9e-51 209.1 232 48.3
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.6e-50 206.1 264 41.7
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.6e-50 206.1 264 41.7
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 8.0e-50 203.8 228 46.5
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 1.8e-46 192.6 203 48.8
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 1.1e-38 166.8 1212 22.8
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 5.4e-30 137.9 162 47.5
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 3.1e-25 122.1 104 57.7
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 1.9e-22 112.8 178 37.6
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 1.2e-21 110.2 178 37.6
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 3.9e-20 105.1 92 54.3
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 6.6e-20 104.4 156 41.7
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 3.6e-18 98.6 121 48.8
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 2.2e-15 89.4 121 37.2
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 5.4e-14 84.7 148 37.2
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 3.5e-13 82.0 111 38.7
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 3.0e-12 79.0 92 42.4
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 1.6e-10 73.2 111 37.8
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 1.1e-09 70.5 70 52.9
AagrBONN_evm.TU.Sc2ySwM_228.35 Anthoceros agrestis HOM05D004478 ORTHO05D072883 4.0e-09 68.6 62 54.8
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 2.2e-07 62.8 84 45.2
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 7.1e-06 57.8 66 43.9


User provided reference genes

Program Settings