Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0039s0001 Marchantia polymorpha HOM05D005720 ORTHO05D006984 0.0e+00 2263.4 1143 100.0
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 7.3e-42 177.2 1132 23.9
Pp3c15_13500 Physcomitrium patens HOM05D005720 ORTHO05D006984 1.7e-30 139.4 1131 22.0
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 4.6e-20 104.8 979 21.3
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 3.0e-19 102.1 987 21.7
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 3.0e-19 102.1 967 23.3
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 8.1e-17 94.0 222 30.2
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 8.1e-17 94.0 1032 21.5
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 1.1e-16 93.6 1132 21.0
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 2.0e-15 89.4 199 34.2
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 2.6e-15 89.0 1024 21.0
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 1.3e-14 86.7 1095 20.5
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 2.9e-14 85.5 975 20.4
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 3.8e-14 85.1 996 21.4
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 6.4e-14 84.3 1140 21.5
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 7.1e-13 80.9 141 37.6
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 1.2e-12 80.1 149 35.6
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 2.7e-12 79.0 160 28.8
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 6.0e-12 77.8 238 28.6
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 1.0e-11 77.0 313 24.9
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 1.3e-11 76.6 200 29.0
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 2.3e-11 75.9 237 27.4
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 2.3e-11 75.9 237 27.0
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 2.3e-11 75.9 284 23.6
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 3.9e-11 75.1 197 29.9
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 6.7e-11 74.3 197 27.9
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 8.7e-11 73.9 983 21.7
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 8.7e-11 73.9 250 25.2
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 1.5e-10 73.2 155 32.3
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 1.5e-10 73.2 236 26.7
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 1.5e-10 73.2 1170 19.8
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 3.3e-10 72.0 257 26.5
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 4.3e-10 71.6 513 21.1
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 5.6e-10 71.2 155 31.6
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 5.6e-10 71.2 288 26.4
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 7.4e-10 70.9 159 30.2
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 7.4e-10 70.9 159 30.2
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 7.4e-10 70.9 227 28.2
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 9.6e-10 70.5 192 29.7
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 9.6e-10 70.5 264 26.1
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 1.3e-09 70.1 253 27.3
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 1.3e-09 70.1 229 27.9
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 1.6e-09 69.7 251 27.9
CBR_g41297 Chara braunii HOM05D005720 ORTHO05D006984 1.6e-09 69.7 171 31.0
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.6e-09 69.7 210 28.6
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 1.6e-09 69.7 150 32.7
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 2.1e-09 69.3 175 28.6
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 2.8e-09 68.9 500 22.6
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 4.8e-09 68.2 223 27.4
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 4.8e-09 68.2 223 27.4
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 4.8e-09 68.2 180 31.1
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 4.8e-09 68.2 205 27.3
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 4.8e-09 68.2 211 24.6
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 4.8e-09 68.2 1094 20.4
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 8.2e-09 67.4 229 29.3
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 8.2e-09 67.4 210 28.1
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 8.2e-09 67.4 261 25.7
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 1.1e-08 67.0 229 27.5
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 1.4e-08 66.6 273 27.8
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 1.8e-08 66.2 151 30.5
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 2.4e-08 65.9 151 30.5
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 2.4e-08 65.9 154 30.5
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 3.1e-08 65.5 209 26.3
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 4.0e-08 65.1 200 29.0
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 5.3e-08 64.7 215 26.5
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 6.9e-08 64.3 161 29.2
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 9.0e-08 63.9 199 29.6
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 1.2e-07 63.5 202 27.7
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.5e-07 63.2 217 26.3
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.0e-07 62.8 168 29.2
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 2.0e-07 62.8 163 27.6
AagrBONN_evm.TU.Sc2ySwM_117.1094 Anthoceros agrestis HOM05D005720 ORTHO05D006984 2.6e-07 62.4 223 28.7
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 2.6e-07 62.4 230 25.7
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 3.4e-07 62.0 198 28.8
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 4.5e-07 61.6 128 32.8
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 5.8e-07 61.2 264 26.1
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 7.6e-07 60.8 299 25.8
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 1.0e-06 60.5 165 29.7
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 1.0e-06 60.5 411 22.9
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.0e-06 60.5 230 25.2
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 1.0e-06 60.5 197 24.4
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.3e-06 60.1 214 26.6
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 1.7e-06 59.7 275 26.2
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.7e-06 59.7 214 26.6
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 1.7e-06 59.7 200 25.5
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 1.7e-06 59.7 197 24.4
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 3.8e-06 58.5 149 29.5
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 6.5e-06 57.8 228 25.9
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 6.5e-06 57.8 193 26.9


User provided reference genes

Program Settings