Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 2.4e-75 285.4 144 100.0
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 1.6e-34 149.8 146 56.8
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 2.1e-34 149.4 145 55.9
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 5.4e-27 124.8 148 51.4
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 7.1e-27 124.4 149 49.0
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 4.6e-26 121.7 145 50.3
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 1.3e-25 120.2 145 50.3
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 2.3e-25 119.4 146 48.6
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 3.9e-25 118.6 141 47.5
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 5.1e-25 118.2 142 47.2
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 8.7e-25 117.5 147 49.0
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 8.7e-25 117.5 147 49.0
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 8.7e-25 117.5 125 51.2
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 1.5e-24 116.7 138 46.4
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 1.5e-24 116.7 131 53.4
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 4.3e-24 115.2 141 46.8
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 7.3e-24 114.4 142 48.6
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 1.2e-23 113.6 136 50.0
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 1.2e-23 113.6 136 50.0
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 1.6e-23 113.2 141 45.4
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 1.6e-23 113.2 144 46.5
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 1.6e-23 113.2 140 47.9
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 2.1e-23 112.8 141 49.6
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 2.8e-23 112.5 144 46.5
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 3.6e-23 112.1 145 46.2
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 4.7e-23 111.7 143 46.2
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 4.7e-23 111.7 143 46.9
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 6.2e-23 111.3 130 49.2
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 8.1e-23 110.9 146 47.9
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 8.1e-23 110.9 146 46.6
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 8.1e-23 110.9 147 46.9
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 8.1e-23 110.9 146 44.5
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 1.1e-22 110.5 150 45.3
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 1.1e-22 110.5 144 45.8
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 1.4e-22 110.2 141 48.2
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 1.4e-22 110.2 143 46.2
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 1.4e-22 110.2 134 47.8
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 1.8e-22 109.8 141 46.8
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 2.4e-22 109.4 150 44.0
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 3.1e-22 109.0 145 44.8
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 4.0e-22 108.6 141 46.1
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 4.0e-22 108.6 139 44.6
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 5.2e-22 108.2 147 44.9
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 6.9e-22 107.8 145 46.2
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 6.9e-22 107.8 136 47.1
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 6.9e-22 107.8 139 46.8
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 6.9e-22 107.8 141 46.8
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 6.9e-22 107.8 131 47.3
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 9.0e-22 107.5 145 46.2
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 9.0e-22 107.5 139 46.8
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 9.0e-22 107.5 135 46.7
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 9.0e-22 107.5 146 46.6
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 1.2e-21 107.1 158 43.7
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 1.5e-21 106.7 139 46.0
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.5e-21 106.7 144 45.1
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.5e-21 106.7 145 43.4
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 1.5e-21 106.7 143 46.9
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 1.5e-21 106.7 132 48.5
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 1.5e-21 106.7 145 44.8
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 2.0e-21 106.3 127 51.2
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 2.0e-21 106.3 139 44.6
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 2.0e-21 106.3 128 46.1
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 2.0e-21 106.3 130 45.4
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 2.0e-21 106.3 133 46.6
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 2.6e-21 105.9 144 45.1
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 2.6e-21 105.9 138 46.4
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 2.6e-21 105.9 130 46.2
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 2.6e-21 105.9 133 46.6
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 3.4e-21 105.5 149 43.0
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 3.4e-21 105.5 149 43.0
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 3.4e-21 105.5 149 45.0
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 4.4e-21 105.1 148 45.9
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 4.4e-21 105.1 132 47.7
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 4.4e-21 105.1 144 42.4
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 5.8e-21 104.8 132 46.2
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 7.6e-21 104.4 149 42.3
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 9.9e-21 104.0 137 43.8
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 9.9e-21 104.0 144 43.8
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 9.9e-21 104.0 141 43.3
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 9.9e-21 104.0 144 42.4
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 1.3e-20 103.6 142 43.7
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 1.7e-20 103.2 141 41.8
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 1.7e-20 103.2 134 44.8
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 2.2e-20 102.8 131 47.3
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 2.2e-20 102.8 137 40.9
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 2.2e-20 102.8 130 44.6
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 2.9e-20 102.4 123 46.3
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 2.9e-20 102.4 150 44.0
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 4.9e-20 101.7 141 44.7
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 6.4e-20 101.3 130 43.8
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 6.4e-20 101.3 148 44.6
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 8.4e-20 100.9 134 42.5
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 8.4e-20 100.9 143 42.0
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.1e-19 100.5 139 45.3
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 1.1e-19 100.5 142 43.0
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 1.4e-19 100.1 131 45.8
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 1.4e-19 100.1 131 45.8
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 2.4e-19 99.4 138 41.3
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 3.2e-19 99.0 132 46.2
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 4.2e-19 98.6 133 44.4
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 5.4e-19 98.2 146 43.2
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 7.1e-19 97.8 138 38.4
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 9.3e-19 97.4 129 45.7
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 1.2e-18 97.1 143 44.8
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 1.2e-18 97.1 131 44.3
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 1.6e-18 96.7 130 46.2
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 3.5e-18 95.5 125 44.0
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 4.6e-18 95.1 145 43.4
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 4.6e-18 95.1 139 42.4
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 6.0e-18 94.7 130 46.2
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 1.0e-17 94.0 127 48.0
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 1.3e-17 93.6 130 43.8
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 1.1e-16 90.5 131 44.3
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 1.1e-16 90.5 125 43.2
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 1.5e-16 90.1 128 43.8
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 2.5e-16 89.4 88 54.5
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 5.6e-16 88.2 127 44.9
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 5.6e-16 88.2 99 48.5
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 7.3e-16 87.8 133 40.6
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 1.8e-14 83.2 87 49.4
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 3.2e-11 72.4 102 49.0
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 3.5e-10 68.9 103 46.6
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 3.5e-10 68.9 121 35.5
CBR_g27765 Chara braunii HOM05D005924 ORTHO05D007290 6.0e-10 68.2 131 37.4
AagrBONN_evm.TU.Sc2ySwM_340.252 Anthoceros agrestis HOM05D005924 ORTHO05D007290 1.0e-09 67.4 104 45.2
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 1.0e-09 67.4 96 46.9
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 6.7e-09 64.7 107 42.1
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 8.7e-09 64.3 116 40.5
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 1.8e-06 56.6 103 39.8
TAR371G0507 Trochodendron aralioides HOM05D005924 ORTHO05D007290 6.9e-06 54.7 96 37.5


User provided reference genes

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