Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0038s0100 Marchantia polymorpha HOM05D006599 ORTHO05D008304 4.5e-149 531.2 260 100.0
Pp3c13_10960 Physcomitrium patens HOM05D006599 ORTHO05D008304 1.3e-82 310.5 251 58.2
SMO347G0158 Selaginella moellendorffii HOM05D006599 ORTHO05D008304 1.2e-69 267.3 267 49.4
ATR0064G081 Amborella trichopoda HOM05D006599 ORTHO05D008304 7.4e-67 258.1 252 50.4
Nn4g23391 Nelumbo nucifera HOM05D006599 ORTHO05D008304 1.4e-65 253.8 251 49.8
MSTRG.23889 Avicennia marina HOM05D006599 ORTHO05D008304 2.4e-65 253.1 249 48.2
Nn3g17418 Nelumbo nucifera HOM05D006599 ORTHO05D008304 3.1e-65 252.7 252 49.6
Atru.chr8.423 Acer truncatum HOM05D006599 ORTHO05D008304 6.9e-65 251.5 253 48.2
GSVIVG01032932001 Vitis vinifera HOM05D006599 ORTHO05D008304 2.6e-64 249.6 251 47.8
AT5G39250 Arabidopsis thaliana HOM05D006599 ORTHO05D008304 3.4e-64 249.2 252 47.2
Migut.H00636 Erythranthe guttata HOM05D006599 ORTHO05D008304 4.5e-64 248.8 251 46.6
CSS0025230 Camellia sinensis var. sinensis HOM05D006599 ORTHO05D008304 7.7e-64 248.1 251 47.8
Eucgr.J01379 Eucalyptus grandis HOM05D006599 ORTHO05D008304 1.0e-63 247.7 250 47.6
TAR629G1530 Trochodendron aralioides HOM05D006599 ORTHO05D008304 1.0e-63 247.7 250 47.2
Duzib147G0316 Durio zibethinus HOM05D006599 ORTHO05D008304 2.2e-63 246.5 253 47.0
Hma1.2p1_0481F.1_g162060 Hydrangea macrophylla HOM05D006599 ORTHO05D008304 2.2e-63 246.5 250 46.8
Gohir.D09G009200 Gossypium hirsutum HOM05D006599 ORTHO05D008304 3.8e-63 245.7 249 45.4
ClCG07G007400 Citrullus lanatus HOM05D006599 ORTHO05D008304 5.0e-63 245.4 249 47.0
Gohir.A09G010100 Gossypium hirsutum HOM05D006599 ORTHO05D008304 5.0e-63 245.4 249 45.8
Gorai.006G010900 Gossypium raimondii HOM05D006599 ORTHO05D008304 6.5e-63 245.0 249 45.4
Carub.0007s3667 Capsella rubella HOM05D006599 ORTHO05D008304 8.5e-63 244.6 252 48.0
Oeu047780.1 Olea europaea HOM05D006599 ORTHO05D008304 8.5e-63 244.6 251 48.6
Aqoxy3G00501 Aquilegia oxysepala HOM05D006599 ORTHO05D008304 1.1e-62 244.2 251 47.8
TWI34G0408 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 1.1e-62 244.2 249 47.4
Thecc.04G093300 Theobroma cacao HOM05D006599 ORTHO05D008304 1.4e-62 243.8 253 46.2
Cfa007654 Carpinus fangiana HOM05D006599 ORTHO05D008304 2.5e-62 243.0 253 45.5
MELO3C013909.2 Cucumis melo HOM05D006599 ORTHO05D008304 2.5e-62 243.0 249 45.8
TWI32G0394 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 3.2e-62 242.7 253 47.0
COL.COLO4_21402 Corchorus olitorius HOM05D006599 ORTHO05D008304 4.2e-62 242.3 253 45.1
Sc14g0006220 Simmondsia chinensis HOM05D006599 ORTHO05D008304 5.5e-62 241.9 252 47.6
QL02p067958 Quercus lobata HOM05D006599 ORTHO05D008304 9.4e-62 241.1 251 46.6
PGR083G1582 Punica granatum HOM05D006599 ORTHO05D008304 1.2e-61 240.7 250 46.0
Prupe.3G256500 Prunus persica HOM05D006599 ORTHO05D008304 1.6e-61 240.4 251 46.6
Lsat_1_v5_gn_3_98261 Lactuca sativa HOM05D006599 ORTHO05D008304 2.1e-61 240.0 249 44.2
CsaV3_3G002390 Cucumis sativus L. HOM05D006599 ORTHO05D008304 2.7e-61 239.6 249 44.6
FvH4_6g47020 Fragaria vesca HOM05D006599 ORTHO05D008304 2.7e-61 239.6 251 45.4
FAN14G4927 Fragaria x ananassa HOM05D006599 ORTHO05D008304 2.7e-61 239.6 251 45.4
A04p11970 Brassica napus HOM05D006599 ORTHO05D008304 3.6e-61 239.2 251 46.2
C04p45620 Brassica napus HOM05D006599 ORTHO05D008304 3.6e-61 239.2 251 46.2
BolC4t26144H Brassica oleracea HOM05D006599 ORTHO05D008304 3.6e-61 239.2 251 46.2
BraA04t16862Z Brassica rapa HOM05D006599 ORTHO05D008304 3.6e-61 239.2 251 46.2
BcaC02g09687 Brassica carinata HOM05D006599 ORTHO05D008304 4.6e-61 238.8 251 46.2
Rhsim08G0074600 Rhododendron simsii HOM05D006599 ORTHO05D008304 4.6e-61 238.8 251 47.0
PGSC0003DMG400001449 Solanum tuberosum HOM05D006599 ORTHO05D008304 4.6e-61 238.8 252 45.6
CiPaw.03G089500 Carya illinoinensis HOM05D006599 ORTHO05D008304 7.9e-61 238.0 253 45.8
Solyc02g088730.2 Solanum lycopersicum HOM05D006599 ORTHO05D008304 7.9e-61 238.0 252 45.6
Sopen02g033440 Solanum pennellii HOM05D006599 ORTHO05D008304 7.9e-61 238.0 252 45.6
AUR62029230 Chenopodium quinoa HOM05D006599 ORTHO05D008304 1.0e-60 237.7 257 46.7
HanXRQChr17g0546571 Helianthus annuus HOM05D006599 ORTHO05D008304 1.0e-60 237.7 249 45.8
Oeu035439.1 Olea europaea HOM05D006599 ORTHO05D008304 1.0e-60 237.7 251 48.2
AL7G51210 Arabidopsis lyrata HOM05D006599 ORTHO05D008304 1.4e-60 237.3 251 45.8
Thhalv10027896m.g Eutrema salsugineum HOM05D006599 ORTHO05D008304 1.8e-60 236.9 251 45.8
FAN02G1129 Fragaria x ananassa HOM05D006599 ORTHO05D008304 1.8e-60 236.9 249 44.6
Gohir.D11G076400 Gossypium hirsutum HOM05D006599 ORTHO05D008304 1.8e-60 236.9 253 44.3
Gorai.007G082000 Gossypium raimondii HOM05D006599 ORTHO05D008304 1.8e-60 236.9 253 44.3
HanXRQChr17g0551751 Helianthus annuus HOM05D006599 ORTHO05D008304 1.8e-60 236.9 249 47.0
Cc07_g04100 Coffea canephora HOM05D006599 ORTHO05D008304 2.3e-60 236.5 250 47.2
Gohir.A11G072300 Gossypium hirsutum HOM05D006599 ORTHO05D008304 2.3e-60 236.5 253 44.3
RcHm_v2.0_Chr2g0166081 Rosa chinensis HOM05D006599 ORTHO05D008304 2.3e-60 236.5 253 45.8
Os03g0423000 Oryza sativa ssp. japonica HOM05D006599 ORTHO05D008304 3.0e-60 236.1 256 45.7
PSO478G2235 Papaver somniferum HOM05D006599 ORTHO05D008304 3.0e-60 236.1 250 45.2
CARHR263160 Cardamine hirsuta HOM05D006599 ORTHO05D008304 3.9e-60 235.7 251 45.0
FAN09G1977 Fragaria x ananassa HOM05D006599 ORTHO05D008304 3.9e-60 235.7 251 44.6
PSO017G0459 Papaver somniferum HOM05D006599 ORTHO05D008304 6.7e-60 235.0 250 44.4
BcaB06g27283 Brassica carinata HOM05D006599 ORTHO05D008304 1.1e-59 234.2 251 45.0
Peaxi162Scf00166g00058 Petunia axillaris HOM05D006599 ORTHO05D008304 1.1e-59 234.2 252 45.2
Potri.004G119500 Populus trichocarpa HOM05D006599 ORTHO05D008304 1.5e-59 233.8 251 44.6
Sed0027615 Sechium edule HOM05D006599 ORTHO05D008304 1.5e-59 233.8 249 44.2
DCAR_025424 Daucus carota HOM05D006599 ORTHO05D008304 2.0e-59 233.4 248 44.0
MD09G1064500 Malus domestica HOM05D006599 ORTHO05D008304 2.0e-59 233.4 250 45.2
Nitab4.5_0000565g0260 Nicotiana tabacum HOM05D006599 ORTHO05D008304 2.0e-59 233.4 252 44.8
Nitab4.5_0010051g0050 Nicotiana tabacum HOM05D006599 ORTHO05D008304 2.0e-59 233.4 252 44.8
CAN.G206.218 Capsicum annuum HOM05D006599 ORTHO05D008304 3.3e-59 232.6 252 44.4
CANSAT64G1926 Cannabis sativa HOM05D006599 ORTHO05D008304 4.4e-59 232.3 253 43.5
ECA232G1145 Erigeron canadensis HOM05D006599 ORTHO05D008304 4.4e-59 232.3 249 44.6
THA.LOC104823890 Tarenaya hassleriana HOM05D006599 ORTHO05D008304 4.4e-59 232.3 251 43.8
AUR62022778 Chenopodium quinoa HOM05D006599 ORTHO05D008304 5.7e-59 231.9 250 46.0
Sp7g02740 Schrenkiella parvula HOM05D006599 ORTHO05D008304 1.3e-58 230.7 251 44.6
arahy.Tifrunner.gnm1.ann1.CT2P3Y Arachis hypogaea HOM05D006599 ORTHO05D008304 1.7e-58 230.3 253 43.9
arahy.Tifrunner.gnm1.ann1.24WTBT Arachis hypogaea HOM05D006599 ORTHO05D008304 2.8e-58 229.6 253 43.5
Manes.02G054000 Manihot esculenta HOM05D006599 ORTHO05D008304 2.8e-58 229.6 253 43.5
Aa31LG9G16680 Aethionema arabicum HOM05D006599 ORTHO05D008304 3.7e-58 229.2 251 44.2
Medtr7g013160 Medicago truncatula HOM05D006599 ORTHO05D008304 1.1e-57 227.6 251 41.0
Potri.017G092800 Populus trichocarpa HOM05D006599 ORTHO05D008304 1.1e-57 227.6 253 43.9
Sabra04G0069000 Salix brachista HOM05D006599 ORTHO05D008304 1.4e-57 227.3 249 43.8
TPR.G33427 Trifolium pratense HOM05D006599 ORTHO05D008304 1.4e-57 227.3 251 43.4
Ca_04338_v3 Cicer arietinum L. HOM05D006599 ORTHO05D008304 2.4e-57 226.5 253 42.3
SGA_v2.0_scaffold52G19170 Striga asiatica HOM05D006599 ORTHO05D008304 2.4e-57 226.5 250 45.2
Psat3g201440 Pisum sativum HOM05D006599 ORTHO05D008304 5.3e-57 225.3 251 39.4
unitig_744.g23984 Utricularia gibba HOM05D006599 ORTHO05D008304 5.3e-57 225.3 249 42.2
Zm00001eb020180 Zea mays HOM05D006599 ORTHO05D008304 6.9e-57 224.9 257 43.2
CDE10G0620 Ceratophyllum demersum HOM05D006599 ORTHO05D008304 9.1e-57 224.6 246 42.7
Ciclev10012597m.g Citrus clementina HOM05D006599 ORTHO05D008304 9.1e-57 224.6 253 44.7
Sabra17G0081900 Salix brachista HOM05D006599 ORTHO05D008304 9.1e-57 224.6 253 43.5
Lalb_Chr17g0337021 Lupinus albus HOM05D006599 ORTHO05D008304 1.2e-56 224.2 251 41.8
HPP92_009527 Vanilla planifolia HOM05D006599 ORTHO05D008304 1.5e-56 223.8 258 45.3
Phvul.008G034600 Phaseolus vulgaris HOM05D006599 ORTHO05D008304 2.0e-56 223.4 251 42.2
HPP92_009554 Vanilla planifolia HOM05D006599 ORTHO05D008304 1.0e-55 221.1 252 45.6
Lj1g0001712 Lotus japonicus HOM05D006599 ORTHO05D008304 6.5e-55 218.4 253 41.1
VMungo1383G0637 Vigna mungo HOM05D006599 ORTHO05D008304 6.5e-55 218.4 251 41.0
SHI25645 Sapria himalayana HOM05D006599 ORTHO05D008304 5.5e-54 215.3 252 42.9
Glyma.18G265500 Glycine max HOM05D006599 ORTHO05D008304 7.2e-54 214.9 251 40.6
Manes.01G097300 Manihot esculenta HOM05D006599 ORTHO05D008304 2.3e-52 209.9 233 43.8
Thecc.04G093200 Theobroma cacao HOM05D006599 ORTHO05D008304 5.7e-51 205.3 253 42.7
Haze_14439 Corylus avellana HOM05D006599 ORTHO05D008304 6.3e-50 201.8 207 46.4
Peaxi162Scf00451g00012 Petunia axillaris HOM05D006599 ORTHO05D008304 1.2e-48 197.6 241 41.1
Glyma.08G243300 Glycine max HOM05D006599 ORTHO05D008304 3.2e-46 189.5 261 37.2
Lsat_1_v5_gn_7_2780 Lactuca sativa HOM05D006599 ORTHO05D008304 4.8e-34 149.1 265 36.2
FAN05G2816 Fragaria x ananassa HOM05D006599 ORTHO05D008304 1.1e-30 137.9 156 41.7
Peaxi162Scf00451g00005 Petunia axillaris HOM05D006599 ORTHO05D008304 5.5e-30 135.6 295 31.2
Dinv34953 Davidia involucrata HOM05D006599 ORTHO05D008304 2.8e-29 133.3 133 46.6
Lj4E117T1 Lonicera japonica HOM05D006599 ORTHO05D008304 3.1e-25 119.8 113 50.4
Dinv33823 Davidia involucrata HOM05D006599 ORTHO05D008304 1.8e-20 104.0 98 49.0
Lalb_Chr10g0093051 Lupinus albus HOM05D006599 ORTHO05D008304 1.7e-15 87.4 94 40.4
EL10Ac9g22551 Beta vulgaris HOM05D006599 ORTHO05D008304 6.2e-13 79.0 73 45.2
Mapoly0033s0071 Marchantia polymorpha HOM05D006599 ORTHO05D008304 1.9e-09 67.4 132 28.0
Mapoly0033s0082 Marchantia polymorpha HOM05D027965 ORTHO05D048753 1.9e-09 67.4 98 40.8
Peaxi162Scf00270g00422 Petunia axillaris HOM05D006599 ORTHO05D008304 9.2e-09 65.1 150 31.3
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 3.5e-08 63.2 124 32.3
Eucgr.K01581 Eucalyptus grandis HOM05D007529 ORTHO05D007451 1.0e-07 61.6 123 32.5
PGSC0003DMG400031200 Solanum tuberosum HOM05D006599 ORTHO05D008304 2.3e-07 60.5 88 39.8
Lalb_Chr10g0093041 Lupinus albus HOM05D006599 ORTHO05D008304 1.9e-06 57.4 61 44.3
SEGI_22599 Sequoiadendron giganteum HOM05D007529 ORTHO05D007451 5.6e-06 55.8 109 31.2
FvH4_4g15570 Fragaria vesca HOM05D007529 ORTHO05D007451 7.3e-06 55.5 151 28.5
TPR.G10380 Trifolium pratense HOM05D006599 ORTHO05D008304 7.3e-06 55.5 41 61.0


User provided reference genes

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