Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 0.0e+00 1577.4 802 100.0
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 9.1e-241 837.4 804 56.1
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 3.0e-175 619.8 754 46.7
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 1.2e-171 607.8 811 44.0
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 4.6e-160 569.3 841 40.5
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 3.0e-159 566.6 792 42.3
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 7.4e-158 562.0 793 42.0
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 3.7e-157 559.7 791 42.2
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 4.8e-157 559.3 790 41.6
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 6.3e-157 558.9 803 40.8
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 1.8e-156 557.4 795 42.0
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 1.8e-156 557.4 789 41.3
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 2.4e-156 557.0 790 41.9
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 1.2e-155 554.7 791 41.0
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 2.6e-155 553.5 791 41.2
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 3.8e-154 549.7 792 40.8
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 6.5e-154 548.9 804 40.3
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 6.5e-154 548.9 790 40.9
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 1.4e-153 547.7 793 40.5
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 1.4e-153 547.7 789 40.8
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 1.9e-153 547.4 891 37.7
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 1.9e-153 547.4 790 40.9
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 3.2e-153 546.6 795 40.8
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 3.2e-153 546.6 790 40.3
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 4.2e-153 546.2 797 40.7
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 1.2e-152 544.7 791 41.1
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 1.2e-152 544.7 774 41.7
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 1.6e-152 544.3 789 41.1
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 4.6e-152 542.7 789 40.8
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 6.1e-152 542.3 789 40.3
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 7.9e-152 542.0 789 41.3
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 1.0e-151 541.6 790 40.9
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 1.4e-151 541.2 789 40.6
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 5.1e-151 539.3 791 40.8
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 5.1e-151 539.3 788 41.0
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 5.1e-151 539.3 795 40.3
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 5.1e-151 539.3 795 40.3
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 6.7e-151 538.9 795 40.4
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 8.8e-151 538.5 789 40.1
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 2.0e-150 537.3 789 40.3
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 2.5e-150 537.0 791 40.5
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 2.5e-150 537.0 795 39.7
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 2.5e-150 537.0 781 40.8
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 3.3e-150 536.6 795 39.6
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 1.3e-149 534.6 794 40.4
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 1.7e-149 534.3 799 40.4
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 4.8e-149 532.7 791 40.3
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 4.8e-149 532.7 796 40.2
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 6.3e-149 532.3 802 40.0
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 8.2e-149 531.9 785 39.9
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 2.4e-148 530.4 785 39.7
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 2.4e-148 530.4 803 39.6
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 3.1e-148 530.0 794 39.3
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 5.3e-148 529.3 851 39.5
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 6.9e-148 528.9 817 40.9
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 9.1e-148 528.5 784 40.3
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.6e-147 526.9 786 39.6
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 4.5e-147 526.2 799 39.8
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 4.5e-147 526.2 788 39.0
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 1.0e-146 525.0 791 40.1
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 1.3e-146 524.6 791 39.4
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.3e-146 524.6 795 40.3
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 1.3e-146 524.6 793 39.6
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 3.8e-146 523.1 800 39.6
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 1.4e-145 521.2 791 39.4
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 1.4e-145 521.2 785 39.7
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 1.4e-145 521.2 793 39.3
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 3.2e-145 520.0 786 40.1
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.6e-144 517.7 894 37.2
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 2.7e-144 516.9 789 40.8
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 1.0e-143 515.0 816 38.5
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 1.4e-143 514.6 797 39.3
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 2.3e-143 513.8 794 40.3
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 2.0e-142 510.8 796 39.1
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 1.3e-141 508.1 767 40.2
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 8.2e-141 505.4 785 39.1
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 7.7e-139 498.8 879 36.6
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 1.3e-138 498.0 788 39.2
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 1.5e-137 494.6 817 38.3
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 1.2e-136 491.5 791 37.7
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 2.6e-134 483.8 796 38.1
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 5.7e-134 482.6 791 37.5
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 1.3e-133 481.5 785 36.7
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 8.2e-133 478.8 766 38.6
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 3.1e-132 476.9 753 38.5
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 4.1e-132 476.5 788 37.6
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 9.1e-132 475.3 790 38.0
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 2.6e-131 473.8 790 38.1
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 9.1e-124 448.7 794 37.4
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 1.6e-123 448.0 735 38.8
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 2.0e-115 421.0 733 36.8
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 1.0e-114 418.7 505 44.8
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 2.4e-108 397.5 784 34.3
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.1e-104 384.4 439 46.5
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 2.8e-104 384.0 484 44.2
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 1.0e-98 365.5 540 40.6
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 3.4e-86 323.9 519 38.5
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 7.8e-75 286.2 592 35.0
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.3e-72 278.9 393 42.5
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 1.3e-72 278.9 405 41.5
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 1.1e-68 265.8 773 28.2
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 9.3e-68 262.7 523 34.6
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 3.7e-56 224.2 449 35.2
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 3.3e-49 201.1 454 32.2
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 8.4e-45 186.4 510 30.8
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 1.1e-44 186.0 198 48.5
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 9.3e-44 183.0 195 47.2
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 4.6e-43 180.6 387 33.1
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 7.4e-41 173.3 248 42.7
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 9.7e-41 172.9 481 29.9
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 2.0e-38 165.2 582 26.1
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 1.3e-37 162.5 388 31.7
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 7.2e-36 156.8 511 27.4
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.6e-35 154.1 187 46.0
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 1.2e-27 129.4 158 48.7
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 1.8e-23 115.5 261 31.8
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 1.9e-20 105.5 119 42.9
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 3.6e-19 101.3 174 41.4
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 8.8e-18 96.7 68 58.8
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 4.4e-17 94.4 198 35.9
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 2.8e-16 91.7 82 52.4
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 3.1e-15 88.2 84 51.2
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 7.0e-15 87.0 85 49.4
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 8.5e-13 80.1 116 36.2
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 7.2e-12 77.0 86 40.7
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 2.1e-11 75.5 116 37.1
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.0e-10 73.2 97 41.2
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.4e-10 72.8 87 43.7
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 3.0e-10 71.6 88 45.5
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 6.8e-10 70.5 59 52.5
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.4e-09 68.2 87 43.7
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 4.4e-09 67.8 139 36.0
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 7.5e-09 67.0 87 42.5
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 1.3e-08 66.2 57 52.6
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 6.3e-08 63.9 55 54.5
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 6.3e-08 63.9 72 43.1
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 1.4e-07 62.8 159 32.7
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.2e-06 59.7 52 51.9
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.7e-06 58.5 90 38.9
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 7.7e-06 57.0 59 47.5


User provided reference genes

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