Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0038s0094 Marchantia polymorpha HOM05D005828 ORTHO05D006822 7.9e-45 183.3 89 100.0
Pp3c4_22520 Physcomitrium patens HOM05D005828 ORTHO05D006822 1.4e-17 92.8 63 65.1
arahy.Tifrunner.gnm1.ann1.IQQ61N Arachis hypogaea HOM05D005828 ORTHO05D006822 1.8e-17 92.4 92 50.0
Medtr5g059050 Medicago truncatula HOM05D005828 ORTHO05D006822 1.6e-16 89.4 85 50.6
ECA246G1275 Erigeron canadensis HOM05D005828 ORTHO05D006822 2.0e-16 89.0 85 54.1
Glyma.14G162800 Glycine max HOM05D005828 ORTHO05D006822 2.0e-16 89.0 90 50.0
TAR628G1302 Trochodendron aralioides HOM05D005828 ORTHO05D006822 2.0e-16 89.0 84 50.0
Glyma.13G081900 Glycine max HOM05D005828 ORTHO05D006822 2.7e-16 88.6 90 50.0
Ca_03724_v3 Cicer arietinum L. HOM05D005828 ORTHO05D006822 3.5e-16 88.2 91 49.5
Lj1g0023360 Lotus japonicus HOM05D005828 ORTHO05D006822 3.5e-16 88.2 84 51.2
Phvul.008G165500 Phaseolus vulgaris HOM05D005828 ORTHO05D006822 4.5e-16 87.8 90 48.9
Cpa.g.sc70.13 Carica papaya HOM05D005828 ORTHO05D006822 7.7e-16 87.0 85 51.8
TPR.G8500 Trifolium pratense HOM05D005828 ORTHO05D006822 7.7e-16 87.0 92 47.8
Lalb_Chr04g0253341 Lupinus albus HOM05D005828 ORTHO05D006822 1.3e-15 86.3 90 47.8
Rhsim10G0081200 Rhododendron simsii HOM05D005828 ORTHO05D006822 1.3e-15 86.3 68 55.9
Dinv40388 Davidia involucrata HOM05D005828 ORTHO05D006822 1.7e-15 85.9 83 50.6
Lsat_1_v5_gn_9_83901 Lactuca sativa HOM05D005828 ORTHO05D006822 1.7e-15 85.9 67 58.2
Psat2g078520 Pisum sativum HOM05D005828 ORTHO05D006822 1.7e-15 85.9 90 46.7
Sed0016516 Sechium edule HOM05D005828 ORTHO05D006822 1.7e-15 85.9 65 58.5
Actinidia23063 Actinidia chinensis HOM05D005828 ORTHO05D006822 2.3e-15 85.5 65 60.0
CARHR022310 Cardamine hirsuta HOM05D005828 ORTHO05D006822 2.9e-15 85.1 66 59.1
CiPaw.02G169200 Carya illinoinensis HOM05D005828 ORTHO05D006822 2.9e-15 85.1 86 52.3
Duzib041G0320 Durio zibethinus HOM05D005828 ORTHO05D006822 3.8e-15 84.7 84 48.8
Hma1.2p1_0248F.1_g102070 Hydrangea macrophylla HOM05D005828 ORTHO05D006822 3.8e-15 84.7 71 56.3
Prupe.1G501700 Prunus persica HOM05D005828 ORTHO05D006822 3.8e-15 84.7 65 58.5
AUR62011415 Chenopodium quinoa HOM05D005828 ORTHO05D006822 5.0e-15 84.3 87 47.1
AUR62022881 Chenopodium quinoa HOM05D005828 ORTHO05D006822 5.0e-15 84.3 87 47.1
FAN27G1656 Fragaria x ananassa HOM05D005828 ORTHO05D006822 5.0e-15 84.3 70 54.3
HanXRQChr12g0379421 Helianthus annuus HOM05D005828 ORTHO05D006822 5.0e-15 84.3 65 56.9
Manes.18G074748 Manihot esculenta HOM05D005828 ORTHO05D006822 6.6e-15 84.0 65 61.5
Os12g0481200 Oryza sativa ssp. japonica HOM05D005828 ORTHO05D006822 6.6e-15 84.0 79 54.4
QL09p036513 Quercus lobata HOM05D005828 ORTHO05D006822 6.6e-15 84.0 85 50.6
Atru.chr13.1407 Acer truncatum HOM05D005828 ORTHO05D006822 8.6e-15 83.6 79 50.6
CSS0005937 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 8.6e-15 83.6 63 58.7
ClCG11G015600 Citrullus lanatus HOM05D005828 ORTHO05D006822 8.6e-15 83.6 84 48.8
Ciclev10002958m.g Citrus clementina HOM05D005828 ORTHO05D006822 8.6e-15 83.6 80 52.5
Nn7g37602 Nelumbo nucifera HOM05D005828 ORTHO05D006822 8.6e-15 83.6 83 48.2
Oeu050902.1 Olea europaea HOM05D005828 ORTHO05D006822 8.6e-15 83.6 81 53.1
Thecc.08G121200 Theobroma cacao HOM05D005828 ORTHO05D006822 8.6e-15 83.6 87 48.3
CDE01G0185 Ceratophyllum demersum HOM05D005828 ORTHO05D006822 1.1e-14 83.2 76 52.6
ATR0021G028 Amborella trichopoda HOM05D005828 ORTHO05D006822 1.5e-14 82.8 81 48.1
CANSAT64G1100 Cannabis sativa HOM05D005828 ORTHO05D006822 1.5e-14 82.8 65 56.9
DCAR_014096 Daucus carota HOM05D005828 ORTHO05D006822 1.5e-14 82.8 56 66.1
TWI56G1238 Tripterygium wilfordii HOM05D005828 ORTHO05D006822 1.5e-14 82.8 66 54.5
EL10Ac9g21807 Beta vulgaris HOM05D005828 ORTHO05D006822 1.9e-14 82.4 69 55.1
PSO170G1674 Papaver somniferum HOM05D005828 ORTHO05D006822 1.9e-14 82.4 71 53.5
unitig_22.g6732 Utricularia gibba HOM05D005828 ORTHO05D006822 1.9e-14 82.4 62 58.1
Zm00001eb318220 Zea mays HOM05D005828 ORTHO05D006822 1.9e-14 82.4 62 61.3
CAN.G48.25 Capsicum annuum HOM05D005828 ORTHO05D006822 2.5e-14 82.0 80 50.0
CsaV3_4G028420 Cucumis sativus L. HOM05D005828 ORTHO05D006822 2.5e-14 82.0 75 54.7
Migut.C01150 Erythranthe guttata HOM05D005828 ORTHO05D006822 2.5e-14 82.0 87 46.0
Eucgr.F03768 Eucalyptus grandis HOM05D005828 ORTHO05D006822 2.5e-14 82.0 90 47.8
MD15G1353400 Malus domestica HOM05D005828 ORTHO05D006822 2.5e-14 82.0 61 60.7
Hund16842 Selenicereus undatus HOM05D005828 ORTHO05D006822 2.5e-14 82.0 76 52.6
GSVIVG01013096001 Vitis vinifera HOM05D005828 ORTHO05D006822 2.5e-14 82.0 62 61.3
Ah.01g019990 Amaranthus hybridus HOM05D005828 ORTHO05D006822 3.3e-14 81.6 81 49.4
DCAR_014107 Daucus carota HOM05D005828 ORTHO05D006822 3.3e-14 81.6 54 66.7
FvH4_2g26520 Fragaria vesca HOM05D005828 ORTHO05D006822 3.3e-14 81.6 70 51.4
FAN24G3109 Fragaria x ananassa HOM05D005828 ORTHO05D006822 3.3e-14 81.6 70 51.4
SGA_v2.0_scaffold52G18982 Striga asiatica HOM05D005828 ORTHO05D006822 3.3e-14 81.6 62 58.1
Cc10_g15090 Coffea canephora HOM05D005828 ORTHO05D006822 4.2e-14 81.3 62 59.7
Gohir.A06G042500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 4.2e-14 81.3 62 59.7
Gohir.D06G043500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 4.2e-14 81.3 62 59.7
Gorai.010G048600 Gossypium raimondii HOM05D005828 ORTHO05D006822 4.2e-14 81.3 62 59.7
MBI11_g22242_MAGBIO Magnolia biondii HOM05D005828 ORTHO05D006822 4.2e-14 81.3 61 60.7
Rhsim02G0128100 Rhododendron simsii HOM05D005828 ORTHO05D006822 4.2e-14 81.3 64 57.8
RcHm_v2.0_Chr6g0295391 Rosa chinensis HOM05D005828 ORTHO05D006822 4.2e-14 81.3 70 51.4
THA.LOC104810143 Tarenaya hassleriana HOM05D005828 ORTHO05D006822 4.2e-14 81.3 65 55.4
AUR62016643 Chenopodium quinoa HOM05D005828 ORTHO05D006822 5.5e-14 80.9 73 53.4
MELO3C010460.2 Cucumis melo HOM05D005828 ORTHO05D006822 5.5e-14 80.9 74 54.1
Duzib093G2142 Durio zibethinus HOM05D005828 ORTHO05D006822 5.5e-14 80.9 86 50.0
Migut.G00970 Erythranthe guttata HOM05D005828 ORTHO05D006822 5.5e-14 80.9 62 59.7
Migut.K01196 Erythranthe guttata HOM05D005828 ORTHO05D006822 5.5e-14 80.9 62 59.7
MD08G1168000 Malus domestica HOM05D005828 ORTHO05D006822 5.5e-14 80.9 69 56.5
Sc01g0001360 Simmondsia chinensis HOM05D005828 ORTHO05D006822 5.5e-14 80.9 61 62.3
Aa31LG7G5940 Aethionema arabicum HOM05D005828 ORTHO05D006822 7.2e-14 80.5 64 56.2
Aqoxy6G00155 Aquilegia oxysepala HOM05D005828 ORTHO05D006822 7.2e-14 80.5 63 57.1
AL1G35150 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 7.2e-14 80.5 64 56.2
AL1G35290 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 7.2e-14 80.5 64 56.2
AT1G21930 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 7.2e-14 80.5 64 56.2
AT3G42150 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 7.2e-14 80.5 64 56.2
Carub.0001s2142 Capsella rubella HOM05D005828 ORTHO05D006822 7.2e-14 80.5 64 56.2
Haze_00481 Corylus avellana HOM05D005828 ORTHO05D006822 7.2e-14 80.5 74 52.7
FAN15G3227 Fragaria x ananassa HOM05D005828 ORTHO05D006822 7.2e-14 80.5 69 52.2
RhsimUnG0054200 Rhododendron simsii HOM05D005828 ORTHO05D006822 7.2e-14 80.5 52 67.3
Solyc03g093220.3 Solanum lycopersicum HOM05D005828 ORTHO05D006822 7.2e-14 80.5 79 51.9
PGSC0003DMG400014827 Solanum tuberosum HOM05D005828 ORTHO05D006822 7.2e-14 80.5 59 62.7
Nn1g08691 Nelumbo nucifera HOM05D005828 ORTHO05D006822 9.5e-14 80.1 62 58.1
CSS0009962 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 1.2e-13 79.7 52 67.3
Nitab4.5_0010023g0030 Nicotiana tabacum HOM05D005828 ORTHO05D006822 1.2e-13 79.7 92 43.5
SalBow1G4500 Salvia bowleyana HOM05D005828 ORTHO05D006822 1.2e-13 79.7 68 57.4
Sopen03g024020 Solanum pennellii HOM05D005828 ORTHO05D006822 1.2e-13 79.7 60 61.7
BcaC06g34917 Brassica carinata HOM05D005828 ORTHO05D006822 1.6e-13 79.3 64 54.7
C07p21820 Brassica napus HOM05D005828 ORTHO05D006822 1.6e-13 79.3 64 54.7
BolC7t42713H Brassica oleracea HOM05D005828 ORTHO05D006822 1.6e-13 79.3 64 54.7
Thhalv10009188m.g Eutrema salsugineum HOM05D005828 ORTHO05D006822 1.6e-13 79.3 62 56.5
Potri.002G086300 Populus trichocarpa HOM05D005828 ORTHO05D006822 1.6e-13 79.3 65 52.3
SHI08265 Sapria himalayana HOM05D005828 ORTHO05D006822 1.6e-13 79.3 61 60.7
HPP92_010723 Vanilla planifolia HOM05D005828 ORTHO05D006822 1.6e-13 79.3 62 58.1
Dinv27340 Davidia involucrata HOM05D005828 ORTHO05D006822 2.1e-13 79.0 62 59.7
A07p14860 Brassica napus HOM05D005828 ORTHO05D006822 2.8e-13 78.6 64 54.7
A09p42800 Brassica napus HOM05D005828 ORTHO05D006822 2.8e-13 78.6 62 54.8
BraA09t39754Z Brassica rapa HOM05D005828 ORTHO05D006822 2.8e-13 78.6 62 54.8
Peaxi162Scf00241g00022 Petunia axillaris HOM05D005828 ORTHO05D006822 2.8e-13 78.6 81 48.1
vmacro15901 Vaccinium macrocarpon HOM05D005828 ORTHO05D006822 2.8e-13 78.6 52 65.4
BcaB03g14247 Brassica carinata HOM05D005828 ORTHO05D006822 3.6e-13 78.2 62 54.8
BcaB07g32190 Brassica carinata HOM05D005828 ORTHO05D006822 3.6e-13 78.2 62 54.8
BcaC05g26118 Brassica carinata HOM05D005828 ORTHO05D006822 3.6e-13 78.2 62 54.8
BcaC05g26120 Brassica carinata HOM05D005828 ORTHO05D006822 3.6e-13 78.2 62 54.8
C05p20980 Brassica napus HOM05D005828 ORTHO05D006822 3.6e-13 78.2 62 54.8
BolC5t30794H Brassica oleracea HOM05D005828 ORTHO05D006822 3.6e-13 78.2 60 55.0
BolC5t30796H Brassica oleracea HOM05D005828 ORTHO05D006822 3.6e-13 78.2 62 54.8
PGR042G1795 Punica granatum HOM05D005828 ORTHO05D006822 3.6e-13 78.2 62 54.8
Sabra02G0067700 Salix brachista HOM05D005828 ORTHO05D006822 3.6e-13 78.2 52 65.4
Sp1g19470 Schrenkiella parvula HOM05D005828 ORTHO05D006822 3.6e-13 78.2 62 54.8
Nitab4.5_0002816g0110 Nicotiana tabacum HOM05D005828 ORTHO05D006822 6.1e-13 77.4 92 43.5
BcaB07g32192 Brassica carinata HOM05D005828 ORTHO05D006822 1.4e-12 76.3 62 56.5
QL09p035324 Quercus lobata HOM05D005828 ORTHO05D006822 1.4e-12 76.3 55 61.8
PSO528G0081 Papaver somniferum HOM05D005828 ORTHO05D006822 4.0e-12 74.7 52 61.5
HPP92_010646 Vanilla planifolia HOM05D005828 ORTHO05D006822 1.5e-11 72.8 62 53.2
SMO232G0111 Selaginella moellendorffii HOM05D005828 ORTHO05D006822 2.4e-09 65.5 49 57.1
SEGI_28823 Sequoiadendron giganteum HOM05D005828 ORTHO05D006822 3.1e-09 65.1 45 66.7
AagrBONN_evm.TU.Sc2ySwM_368.871 Anthoceros agrestis HOM05D005828 ORTHO05D006822 7.0e-09 63.9 63 47.6
Medtr5g058700 Medicago truncatula HOM05D005828 ORTHO05D006822 1.3e-07 59.7 81 42.0
BcaC07g42575 Brassica carinata HOM05D005828 ORTHO05D006822 8.6e-07 57.0 62 43.5
Pp3c3_450 Physcomitrium patens HOM05D005828 ORTHO05D006822 7.3e-06 53.9 46 60.9


User provided reference genes

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