Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 7.0e-118 427.2 198 100.0
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 1.1e-97 360.1 198 81.8
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 6.8e-97 357.5 217 75.6
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 2.3e-92 342.4 198 77.3
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 2.1e-90 335.9 196 75.0
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 4.7e-90 334.7 196 74.5
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 6.2e-90 334.3 197 74.1
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 1.4e-89 333.2 196 74.0
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 1.4e-89 333.2 196 74.0
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 1.8e-89 332.8 196 74.0
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 3.1e-89 332.0 196 73.5
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 3.1e-89 332.0 196 74.5
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 3.1e-89 332.0 194 74.7
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 4.0e-89 331.6 197 73.6
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 1.2e-88 330.1 195 73.3
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 1.2e-88 330.1 195 73.3
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 1.2e-88 330.1 196 74.5
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 1.2e-88 330.1 197 73.6
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 1.5e-88 329.7 197 72.6
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 1.5e-88 329.7 197 72.6
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 2.6e-88 328.9 194 74.7
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 2.6e-88 328.9 198 72.7
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 2.6e-88 328.9 196 74.0
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 2.6e-88 328.9 196 74.0
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 3.4e-88 328.6 196 74.0
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 4.4e-88 328.2 196 73.5
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 4.4e-88 328.2 196 73.0
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 4.4e-88 328.2 193 74.1
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 4.4e-88 328.2 196 73.5
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 5.8e-88 327.8 195 73.8
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 7.6e-88 327.4 196 73.5
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 7.6e-88 327.4 196 73.0
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 9.9e-88 327.0 201 73.1
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 9.9e-88 327.0 196 73.5
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 1.3e-87 326.6 196 73.0
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 1.7e-87 326.2 196 72.4
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 1.7e-87 326.2 197 72.6
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 2.2e-87 325.9 196 73.0
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 2.2e-87 325.9 196 73.0
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 2.2e-87 325.9 196 72.4
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 2.9e-87 325.5 196 71.9
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 4.9e-87 324.7 195 72.3
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 4.9e-87 324.7 197 72.6
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 6.4e-87 324.3 197 72.6
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 6.4e-87 324.3 197 72.6
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 8.4e-87 323.9 196 72.4
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 8.4e-87 323.9 196 72.4
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 1.1e-86 323.6 196 71.4
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 1.1e-86 323.6 196 71.4
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 2.4e-86 322.4 189 74.1
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 3.2e-86 322.0 219 67.1
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 3.2e-86 322.0 198 71.2
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 4.2e-86 321.6 196 71.9
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 9.3e-86 320.5 200 71.0
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 9.3e-86 320.5 189 74.1
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 1.2e-85 320.1 189 73.5
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 1.2e-85 320.1 189 73.5
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.2e-85 320.1 191 72.8
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 1.2e-85 320.1 189 74.1
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 1.6e-85 319.7 197 70.6
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 1.6e-85 319.7 196 71.4
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 3.5e-85 318.5 186 74.7
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 4.6e-85 318.2 196 70.9
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 4.6e-85 318.2 213 67.6
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 6.0e-85 317.8 198 70.2
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 6.0e-85 317.8 189 72.5
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 6.0e-85 317.8 189 73.0
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 7.8e-85 317.4 192 72.9
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 7.8e-85 317.4 197 72.1
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 7.8e-85 317.4 198 69.7
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 1.0e-84 317.0 193 73.1
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 1.0e-84 317.0 182 76.4
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 1.7e-84 316.2 198 69.7
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 1.7e-84 316.2 198 69.7
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 1.7e-84 316.2 196 70.4
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 1.7e-84 316.2 198 69.7
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 1.7e-84 316.2 196 70.9
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 3.0e-84 315.5 191 71.7
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 3.9e-84 315.1 191 70.7
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.1e-83 313.5 197 69.0
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 1.5e-83 313.2 191 71.2
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 3.3e-83 312.0 198 69.7
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 3.3e-83 312.0 198 69.2
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 1.3e-82 310.1 191 69.6
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 4.8e-82 308.1 179 75.4
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 1.1e-81 307.0 196 66.8
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 1.1e-81 307.0 192 71.4
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 1.4e-81 306.6 191 70.7
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 4.0e-81 305.1 177 75.1
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 9.0e-81 303.9 177 75.1
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 1.2e-80 303.5 201 68.7
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 4.4e-80 301.6 182 73.1
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 4.4e-80 301.6 196 65.3
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 7.6e-80 300.8 185 70.8
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 7.6e-80 300.8 185 70.8
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 1.4e-78 296.6 170 75.9
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 4.2e-78 295.0 185 70.3
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 7.1e-78 294.3 182 72.0
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 2.1e-77 292.7 180 71.7
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 2.1e-77 292.7 222 61.7
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 1.3e-76 290.0 182 71.4
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 1.6e-74 283.1 162 74.7
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 8.1e-74 280.8 169 72.2
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 1.8e-73 279.6 166 74.7
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 4.0e-73 278.5 169 69.8
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.9e-63 245.7 171 66.7
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.9e-63 245.7 171 66.7
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 7.1e-62 241.1 145 71.7
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 1.8e-60 236.5 145 69.7
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 6.3e-58 228.0 133 74.4
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 4.1e-57 225.3 133 74.4
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 6.9e-57 224.6 133 72.9
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 6.7e-52 208.0 130 69.2
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 6.3e-50 201.4 122 71.3
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 1.8e-49 199.9 143 64.3
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.0e-40 169.9 105 70.5
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 8.2e-34 147.9 87 74.7
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.4e-33 147.1 97 68.0
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 1.2e-32 144.1 89 70.8
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 1.6e-32 143.7 207 37.2
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 5.2e-28 128.6 189 37.6
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 5.9e-24 115.2 67 74.6
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 1.8e-20 103.6 63 69.8
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 1.2e-13 80.9 48 75.0
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 1.8e-12 77.0 63 55.6
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 7.5e-11 71.6 41 70.7
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 4.5e-08 62.4 64 45.3


User provided reference genes

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