Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 0.0e+00 4164.8 2128 100.0
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 0.0e+00 1219.1 2171 38.6
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 4.7e-260 902.9 2204 32.2
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 1.3e-257 894.8 1979 34.0
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 8.6e-246 855.5 2178 31.3
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 1.8e-243 847.8 2173 31.7
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 1.8e-243 847.8 2157 31.3
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 2.6e-242 844.0 2168 31.4
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 4.4e-242 843.2 2168 32.2
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 5.8e-242 842.8 2157 31.3
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 4.9e-241 839.7 2164 31.4
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 1.9e-240 837.8 2162 31.4
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 2.4e-240 837.4 2167 30.8
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 4.1e-240 836.6 2195 31.9
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 1.6e-239 834.7 2162 31.2
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 2.7e-239 833.9 2164 30.3
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 3.5e-239 833.6 2180 30.5
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 3.5e-239 833.6 2173 31.6
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 4.6e-239 833.2 2178 31.6
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 4.6e-239 833.2 2177 31.8
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 6.0e-239 832.8 2186 31.2
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 1.3e-238 831.6 2176 31.3
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 2.5e-237 827.4 2164 32.0
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 7.3e-237 825.9 2193 30.7
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 4.7e-236 823.2 2161 30.6
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 1.4e-235 821.6 2171 31.4
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 2.3e-235 820.8 2195 31.5
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 4.0e-235 820.1 2166 30.5
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 5.2e-235 819.7 2178 31.7
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 3.7e-233 813.5 2163 31.3
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 1.1e-232 812.0 2185 31.3
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 1.9e-232 811.2 2175 31.1
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 4.1e-232 810.1 2187 30.7
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 1.2e-231 808.5 2178 30.9
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 2.1e-231 807.7 2167 30.8
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 2.7e-231 807.4 2207 31.4
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 4.6e-231 806.6 2146 30.9
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 7.8e-231 805.8 2168 30.7
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 1.3e-230 805.1 2179 30.7
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 2.3e-230 804.3 2240 31.1
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 2.3e-230 804.3 2182 30.6
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 8.6e-230 802.4 2161 32.1
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 1.9e-229 801.2 2169 30.6
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 9.5e-229 798.9 2194 30.9
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 1.2e-228 798.5 2172 30.8
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 1.6e-228 798.1 2162 31.1
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 2.1e-228 797.7 2173 31.4
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 2.8e-228 797.3 2182 30.3
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 3.6e-228 797.0 2193 31.1
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 8.1e-228 795.8 2157 31.2
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 2.0e-226 791.2 2168 31.2
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 4.4e-226 790.0 2180 30.7
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 7.6e-226 789.3 2152 31.4
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 2.9e-225 787.3 2183 30.2
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 6.4e-225 786.2 2149 30.6
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 1.1e-224 785.4 2155 31.2
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 1.9e-224 784.6 2155 31.2
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 1.9e-224 784.6 2156 30.4
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 2.4e-224 784.3 2160 30.2
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 3.2e-224 783.9 2155 31.2
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 3.2e-224 783.9 2151 31.3
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 3.2e-224 783.9 2185 30.0
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 7.1e-224 782.7 2147 31.2
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 7.1e-224 782.7 2202 30.6
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 1.2e-223 781.9 2157 30.7
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 2.1e-223 781.2 2187 30.3
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 3.5e-223 780.4 2190 30.6
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 6.0e-223 779.6 2149 30.7
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 1.3e-222 778.5 2159 30.4
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 5.1e-222 776.5 2153 30.7
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 5.1e-222 776.5 2186 30.1
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 3.3e-221 773.9 2210 30.2
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 4.3e-221 773.5 2202 30.7
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 4.7e-220 770.0 2184 30.3
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 1.4e-219 768.5 2187 30.2
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 6.9e-219 766.1 2177 30.1
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 2.6e-218 764.2 2162 30.8
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 3.4e-218 763.8 2162 30.4
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 1.6e-212 745.0 2142 29.1
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 7.1e-208 729.6 2167 29.6
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 3.9e-206 723.8 2184 29.7
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 1.5e-205 721.8 2107 29.0
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 2.5e-205 721.1 2105 30.0
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 1.5e-202 711.8 2281 28.8
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 5.8e-202 709.9 2132 28.8
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 9.9e-202 709.1 2185 29.9
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 1.3e-201 708.8 2093 30.1
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 7.1e-200 703.0 2157 29.0
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 1.9e-197 694.9 2086 29.4
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 2.4e-195 688.0 2134 29.6
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 1.3e-185 655.6 2177 26.9
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 1.9e-184 651.7 2108 28.7
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 2.3e-174 618.2 1565 32.6
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 7.4e-173 613.2 1471 32.5
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 5.5e-152 543.9 1943 26.6
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 1.4e-147 529.3 1172 31.9
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 1.7e-145 522.3 1890 27.3
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 1.4e-142 512.7 1895 27.5
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 1.4e-139 502.7 1898 27.3
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 2.8e-135 488.4 825 37.7
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 4.1e-107 394.8 569 41.3
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 9.2e-107 393.7 404 53.2
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.2e-106 393.3 1816 24.3
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 2.1e-103 382.5 1823 25.2
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 8.1e-95 354.0 389 47.8
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 9.9e-93 347.1 450 44.9
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 2.1e-87 329.3 375 50.9
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 2.4e-86 325.9 1289 26.0
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 9.3e-83 313.9 339 51.6
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 3.5e-74 285.4 264 56.1
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 8.7e-73 280.8 465 38.7
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.4e-70 273.5 358 45.3
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 5.3e-70 271.6 266 52.6
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 1.5e-69 270.0 253 53.8
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 5.5e-67 261.5 1101 25.2
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 1.4e-51 210.3 196 49.0
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 6.3e-47 194.9 569 31.3
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 3.0e-41 176.0 827 24.5
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-37 162.9 489 28.4
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 2.2e-36 159.8 215 39.1
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.0e-33 151.0 449 29.2
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 5.2e-33 148.7 203 40.9
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 3.5e-29 136.0 225 36.9
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 3.5e-29 136.0 538 26.8
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 3.4e-24 119.4 256 31.2
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 3.4e-24 119.4 179 39.1
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 8.3e-23 114.8 80 63.8
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 8.0e-18 98.2 324 23.8
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 2.3e-17 96.7 174 39.7
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 5.2e-17 95.5 485 25.2
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 1.2e-16 94.4 131 42.7
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 3.7e-15 89.4 350 29.4
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 1.1e-09 71.2 56 57.1
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 1.1e-09 71.2 56 57.1
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 1.8e-09 70.5 61 67.2
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 3.1e-09 69.7 56 55.4
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 2.0e-08 67.0 57 50.9
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 5.8e-08 65.5 63 61.9
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 2.2e-07 63.5 63 46.0
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 8.3e-07 61.6 107 36.4
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 5.4e-06 58.9 49 57.1


User provided reference genes

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