Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 6.6e-45 183.7 97 100.0
AagrBONN_evm.TU.Sc2ySwM_344.5276 Anthoceros agrestis HOM05D005070 ORTHO05D005987 8.4e-16 87.0 88 52.3
AagrBONN_evm.TU.Sc2ySwM_362.1955 Anthoceros agrestis HOM05D005070 ORTHO05D005987 2.7e-14 82.0 88 50.0
Pp3c7_6970 Physcomitrium patens HOM05D005070 ORTHO05D005987 1.0e-13 80.1 91 50.5
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 7.4e-12 73.9 71 56.3
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 9.7e-12 73.6 64 57.8
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 1.3e-11 73.2 66 62.1
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 1.6e-11 72.8 72 55.6
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 2.8e-11 72.0 61 60.7
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 3.7e-11 71.6 61 59.0
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 4.8e-11 71.2 78 55.1
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 4.8e-11 71.2 66 60.6
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 8.2e-11 70.5 69 55.1
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 1.1e-10 70.1 70 55.7
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 1.1e-10 70.1 61 59.0
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 1.1e-10 70.1 61 59.0
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.4e-10 69.7 59 61.0
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.4e-10 69.7 59 61.0
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 1.4e-10 69.7 66 57.6
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 1.4e-10 69.7 74 52.7
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 1.4e-10 69.7 83 48.2
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 1.8e-10 69.3 62 58.1
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 1.8e-10 69.3 64 57.8
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 1.8e-10 69.3 75 49.3
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.8e-10 69.3 66 56.1
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 2.4e-10 68.9 64 56.2
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.4e-10 68.9 61 59.0
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.4e-10 68.9 61 59.0
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 3.1e-10 68.6 71 54.9
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 3.1e-10 68.6 59 59.3
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 3.1e-10 68.6 69 55.1
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 3.1e-10 68.6 66 53.0
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 3.1e-10 68.6 70 51.4
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 3.1e-10 68.6 70 50.0
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 4.1e-10 68.2 61 57.4
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 4.1e-10 68.2 70 51.4
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 4.1e-10 68.2 61 55.7
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 4.1e-10 68.2 66 56.1
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 4.1e-10 68.2 61 55.7
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 4.1e-10 68.2 72 54.2
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 4.1e-10 68.2 69 59.4
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 4.1e-10 68.2 59 59.3
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 4.1e-10 68.2 69 55.1
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 4.1e-10 68.2 66 54.5
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 5.3e-10 67.8 70 51.4
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 5.3e-10 67.8 59 55.9
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 5.3e-10 67.8 70 50.0
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 5.3e-10 67.8 73 50.7
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 6.9e-10 67.4 74 50.0
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 6.9e-10 67.4 68 55.9
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 9.0e-10 67.0 64 56.2
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 9.0e-10 67.0 73 47.9
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 9.0e-10 67.0 69 50.7
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 9.0e-10 67.0 64 54.7
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 1.2e-09 66.6 66 57.6
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 1.2e-09 66.6 70 51.4
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 1.2e-09 66.6 68 51.5
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 1.2e-09 66.6 61 57.4
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 1.2e-09 66.6 61 55.7
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 1.2e-09 66.6 60 58.3
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 1.2e-09 66.6 64 56.2
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 1.5e-09 66.2 61 57.4
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 1.5e-09 66.2 64 53.1
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 1.5e-09 66.2 70 48.6
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 1.5e-09 66.2 68 54.4
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 1.5e-09 66.2 70 54.3
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 1.5e-09 66.2 66 51.5
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 2.0e-09 65.9 64 54.7
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 2.0e-09 65.9 61 54.1
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 2.0e-09 65.9 59 59.3
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 2.0e-09 65.9 66 53.0
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 2.0e-09 65.9 60 56.7
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 2.6e-09 65.5 69 52.2
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 2.6e-09 65.5 68 55.9
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 2.6e-09 65.5 61 54.1
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 3.4e-09 65.1 61 52.5
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 3.4e-09 65.1 59 57.6
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 4.5e-09 64.7 73 52.1
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 4.5e-09 64.7 68 52.9
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 5.9e-09 64.3 65 55.4
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 5.9e-09 64.3 58 56.9
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 5.9e-09 64.3 82 42.7
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 7.6e-09 63.9 60 58.3
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 7.6e-09 63.9 60 55.0
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 7.6e-09 63.9 54 57.4
CBR_g34554 Chara braunii HOM05D005070 ORTHO05D005987 1.0e-08 63.5 60 51.7
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 1.0e-08 63.5 78 48.7
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 1.0e-08 63.5 78 48.7
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 1.0e-08 63.5 78 48.7
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 1.3e-08 63.2 82 42.7
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 1.3e-08 63.2 68 48.5
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 1.7e-08 62.8 60 56.7
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 1.7e-08 62.8 69 50.7
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 1.7e-08 62.8 68 48.5
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.7e-08 62.8 57 56.1
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 2.2e-08 62.4 60 56.7
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 2.2e-08 62.4 60 56.7
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 2.9e-08 62.0 61 54.1
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 2.9e-08 62.0 60 55.0
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 2.9e-08 62.0 55 58.2
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 3.8e-08 61.6 61 57.4
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 3.8e-08 61.6 60 50.0
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 3.8e-08 61.6 73 47.9
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 3.8e-08 61.6 73 47.9
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 3.8e-08 61.6 73 47.9
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 5.0e-08 61.2 64 50.0
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 6.5e-08 60.8 78 46.2
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 8.5e-08 60.5 73 46.6
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 8.5e-08 60.5 60 50.0
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 1.4e-07 59.7 59 54.2
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.9e-07 59.3 73 46.6
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 3.2e-07 58.5 64 50.0
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 4.2e-07 58.2 43 67.4
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 4.2e-07 58.2 43 67.4
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 7.2e-07 57.4 58 51.7
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 1.2e-06 56.6 58 51.7
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 1.2e-06 56.6 58 51.7
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 1.2e-06 56.6 58 51.7
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 1.6e-06 56.2 57 52.6
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 2.1e-06 55.8 57 49.1
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 2.1e-06 55.8 51 54.9
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 2.1e-06 55.8 52 53.8
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 2.7e-06 55.5 58 50.0
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 2.7e-06 55.5 58 50.0
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 2.7e-06 55.5 58 50.0
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 3.6e-06 55.1 59 47.5
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 6.1e-06 54.3 47 53.2
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 6.1e-06 54.3 75 41.3
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 7.9e-06 53.9 42 61.9


User provided reference genes

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