Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 5.5e-51 204.1 113 100.0
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 9.8e-24 113.6 107 51.4
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 9.8e-24 113.6 107 51.4
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 2.2e-23 112.5 105 56.2
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 2.9e-23 112.1 109 54.1
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 4.9e-23 111.3 107 53.3
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 8.3e-23 110.5 106 57.5
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 8.3e-23 110.5 111 53.2
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 1.4e-22 109.8 106 53.8
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.4e-22 109.8 105 53.3
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 1.8e-22 109.4 107 52.3
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 1.8e-22 109.4 107 52.3
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.8e-22 109.4 107 52.3
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.8e-22 109.4 107 52.3
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 2.4e-22 109.0 106 54.7
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 2.4e-22 109.0 107 51.4
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 2.4e-22 109.0 105 52.4
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 2.4e-22 109.0 106 57.5
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 3.2e-22 108.6 107 54.2
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 3.2e-22 108.6 107 54.2
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 4.1e-22 108.2 107 50.5
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 7.0e-22 107.5 107 50.5
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 9.2e-22 107.1 106 52.8
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 9.2e-22 107.1 108 53.7
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 9.2e-22 107.1 108 50.9
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 9.2e-22 107.1 106 57.5
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 1.2e-21 106.7 104 52.9
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 1.2e-21 106.7 106 53.8
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.2e-21 106.7 105 51.4
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 1.2e-21 106.7 107 55.1
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 1.2e-21 106.7 107 55.1
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.2e-21 106.7 105 50.5
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 1.2e-21 106.7 106 51.9
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.2e-21 106.7 106 52.8
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 1.2e-21 106.7 106 56.6
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 1.2e-21 106.7 79 70.9
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 1.6e-21 106.3 106 52.8
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 1.6e-21 106.3 106 53.8
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 1.6e-21 106.3 109 51.4
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 1.6e-21 106.3 106 51.9
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 1.6e-21 106.3 108 50.9
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 2.0e-21 105.9 105 53.3
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 2.0e-21 105.9 102 55.9
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 2.0e-21 105.9 106 54.7
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 2.0e-21 105.9 107 54.2
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 2.0e-21 105.9 106 50.0
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 2.0e-21 105.9 107 50.5
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 2.0e-21 105.9 106 50.9
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 2.0e-21 105.9 105 50.5
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 2.7e-21 105.5 105 55.2
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 3.5e-21 105.1 103 57.3
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 3.5e-21 105.1 105 55.2
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 3.5e-21 105.1 107 52.3
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 3.5e-21 105.1 106 52.8
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 3.5e-21 105.1 104 55.8
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 4.6e-21 104.8 105 53.3
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 4.6e-21 104.8 103 57.3
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 4.6e-21 104.8 106 51.9
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 4.6e-21 104.8 107 50.5
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 4.6e-21 104.8 106 54.7
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 5.9e-21 104.4 102 55.9
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 5.9e-21 104.4 102 56.9
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 5.9e-21 104.4 106 53.8
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 5.9e-21 104.4 106 50.9
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 5.9e-21 104.4 106 54.7
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 7.8e-21 104.0 106 51.9
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 7.8e-21 104.0 106 54.7
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 7.8e-21 104.0 107 52.3
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 1.0e-20 103.6 111 50.5
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 1.0e-20 103.6 106 50.9
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 1.0e-20 103.6 106 50.9
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.0e-20 103.6 82 65.9
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 1.3e-20 103.2 101 54.5
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 1.3e-20 103.2 103 56.3
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 1.3e-20 103.2 103 56.3
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 1.3e-20 103.2 103 56.3
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 1.3e-20 103.2 103 56.3
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 1.3e-20 103.2 106 51.9
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 1.3e-20 103.2 81 63.0
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 1.3e-20 103.2 106 53.8
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 1.7e-20 102.8 109 53.2
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 1.7e-20 102.8 111 49.5
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 2.3e-20 102.4 106 55.7
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 2.3e-20 102.4 106 52.8
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 2.3e-20 102.4 106 52.8
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 2.3e-20 102.4 107 49.5
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 3.0e-20 102.1 103 55.3
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 3.0e-20 102.1 106 53.8
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 3.0e-20 102.1 102 53.9
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 3.0e-20 102.1 107 54.2
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 3.0e-20 102.1 107 54.2
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 5.0e-20 101.3 103 55.3
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 5.0e-20 101.3 77 64.9
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 5.0e-20 101.3 106 53.8
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 5.0e-20 101.3 87 63.2
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 5.0e-20 101.3 106 50.9
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 6.6e-20 100.9 106 52.8
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 6.6e-20 100.9 104 52.9
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 6.6e-20 100.9 106 50.0
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 8.6e-20 100.5 107 50.5
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 8.6e-20 100.5 75 65.3
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 1.1e-19 100.1 102 54.9
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 1.1e-19 100.1 102 54.9
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 1.1e-19 100.1 101 54.5
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 1.1e-19 100.1 107 49.5
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 1.5e-19 99.8 77 64.9
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 1.5e-19 99.8 106 50.9
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 1.5e-19 99.8 106 48.1
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.5e-19 99.8 106 49.1
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 1.5e-19 99.8 77 63.6
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 2.5e-19 99.0 102 51.0
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 3.3e-19 98.6 102 51.0
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 3.3e-19 98.6 74 64.9
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 4.3e-19 98.2 75 64.0
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 4.3e-19 98.2 102 50.0
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 4.3e-19 98.2 105 48.6
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 4.3e-19 98.2 107 54.2
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 7.3e-19 97.4 107 47.7
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 9.5e-19 97.1 107 49.5
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 9.5e-19 97.1 105 50.5
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 9.5e-19 97.1 106 50.0
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 1.2e-18 96.7 104 56.7
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.4e-17 93.2 138 40.6
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 1.4e-17 93.2 80 63.8
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 1.4e-17 93.2 80 63.8
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 1.8e-17 92.8 104 53.8
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 8.9e-17 90.5 77 61.0
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 1.7e-15 86.3 90 55.6
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 1.7e-15 86.3 105 44.8
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 2.2e-15 85.9 108 46.3
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 3.7e-15 85.1 62 67.7
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 5.4e-14 81.3 104 47.1
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 1.2e-13 80.1 70 60.0
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.2e-13 80.1 67 59.7
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.3e-12 75.9 90 47.8
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 6.6e-12 74.3 106 36.8
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.5e-11 73.2 88 46.6
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 1.5e-11 73.2 104 43.3
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 6.8e-09 64.3 61 55.7
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 1.5e-08 63.2 67 53.7
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 4.4e-08 61.6 67 52.2
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.2e-07 59.3 56 53.6
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 8.3e-07 57.4 72 43.1
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 8.3e-07 57.4 48 60.4
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.9e-06 56.2 41 68.3
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 3.2e-06 55.5 48 60.4
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 5.4e-06 54.7 63 41.3


User provided reference genes

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