Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0038s0008 Marchantia polymorpha HOM05D007459 ORTHO05D009234 6.0e-141 504.2 262 100.0
Pp3c3_12780 Physcomitrium patens HOM05D007459 ORTHO05D009234 4.4e-59 232.3 177 66.1
Pp3c17_9330 Physcomitrium patens HOM05D007459 ORTHO05D009234 1.2e-51 207.6 176 60.8
SEGI_40343 Sequoiadendron giganteum HOM05D007459 ORTHO05D009234 1.5e-19 100.9 137 35.8
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 1.1e-17 94.7 139 36.0
TAR362G1157 Trochodendron aralioides HOM05D007459 ORTHO05D009234 2.1e-16 90.5 178 32.6
ATR0743G068 Amborella trichopoda HOM05D007459 ORTHO05D009234 2.3e-15 87.0 137 35.8
Nitab4.5_0013525g0010 Nicotiana tabacum HOM05D007459 ORTHO05D009234 8.7e-15 85.1 152 34.2
Lj6A129T18 Lonicera japonica HOM05D007459 ORTHO05D009234 1.9e-14 84.0 146 32.2
Hma1.2p1_0554F.1_g177940 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 4.3e-14 82.8 138 36.2
Sc06g0007410 Simmondsia chinensis HOM05D007459 ORTHO05D009234 2.1e-13 80.5 157 33.1
Hma1.2p1_2359F.1_g320593 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 2.8e-13 80.1 138 35.5
Solyc06g073170.1 Solanum lycopersicum HOM05D007459 ORTHO05D009234 2.8e-13 80.1 151 33.1
Dinv44169 Davidia involucrata HOM05D007459 ORTHO05D009234 6.2e-13 79.0 144 32.6
Nitab4.5_0002553g0080 Nicotiana tabacum HOM05D007459 ORTHO05D009234 6.2e-13 79.0 152 32.9
HPP92_004533 Vanilla planifolia HOM05D007459 ORTHO05D009234 8.1e-13 78.6 134 35.1
HPP92_004524 Vanilla planifolia HOM05D007459 ORTHO05D009234 1.1e-12 78.2 146 33.6
Nn1g09730 Nelumbo nucifera HOM05D007459 ORTHO05D009234 3.1e-12 76.6 178 30.3
HanXRQChr14g0433791 Helianthus annuus HOM05D007459 ORTHO05D009234 4.0e-12 76.3 134 31.3
SGA_v2.0_scaffold25G10994 Striga asiatica HOM05D007459 ORTHO05D009234 4.0e-12 76.3 152 33.6
Sopen06g029540 Solanum pennellii HOM05D007459 ORTHO05D009234 6.9e-12 75.5 151 30.5
Peaxi162Scf00180g00063 Petunia axillaris HOM05D007459 ORTHO05D009234 9.0e-12 75.1 150 34.0
unitig_85.g27223 Utricularia gibba HOM05D007459 ORTHO05D009234 9.0e-12 75.1 152 34.9
Zm00001eb078650 Zea mays HOM05D007459 ORTHO05D009234 1.2e-11 74.7 152 33.6
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 1.5e-11 74.3 179 28.5
PGSC0003DMG400027018 Solanum tuberosum HOM05D007459 ORTHO05D009234 3.4e-11 73.2 151 30.5
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 4.4e-11 72.8 143 35.0
Cc03_g12180 Coffea canephora HOM05D007459 ORTHO05D009234 5.8e-11 72.4 187 28.3
CSS0017730 Camellia sinensis var. sinensis HOM05D007459 ORTHO05D009234 9.9e-11 71.6 179 28.5
Migut.N03078 Erythranthe guttata HOM05D007459 ORTHO05D009234 1.3e-10 71.2 136 32.4
TPR.G6565 Trifolium pratense HOM05D007459 ORTHO05D009234 1.7e-10 70.9 177 32.8
Thhalv10001662m.g Eutrema salsugineum HOM05D007459 ORTHO05D009234 2.2e-10 70.5 138 31.2
AL4G42340 Arabidopsis lyrata HOM05D007459 ORTHO05D009234 2.9e-10 70.1 180 27.8
A04p32820 Brassica napus HOM05D007459 ORTHO05D009234 2.9e-10 70.1 179 29.6
BraA04t18744Z Brassica rapa HOM05D007459 ORTHO05D009234 2.9e-10 70.1 179 29.6
C04p70510 Brassica napus HOM05D007459 ORTHO05D009234 3.8e-10 69.7 179 29.6
CARHR138660 Cardamine hirsuta HOM05D007459 ORTHO05D009234 3.8e-10 69.7 138 32.6
Sp4g25650 Schrenkiella parvula HOM05D007459 ORTHO05D009234 3.8e-10 69.7 146 28.8
TPR.G13012 Trifolium pratense HOM05D007459 ORTHO05D009234 3.8e-10 69.7 180 30.0
AT2G43540 Arabidopsis thaliana HOM05D007459 ORTHO05D009234 4.9e-10 69.3 142 29.6
CANSAT56G1213 Cannabis sativa HOM05D007459 ORTHO05D009234 4.9e-10 69.3 161 29.8
Lalb_Chr22g0352011 Lupinus albus HOM05D007459 ORTHO05D009234 4.9e-10 69.3 181 30.9
Actinidia27099 Actinidia chinensis HOM05D007459 ORTHO05D009234 6.4e-10 68.9 97 36.1
BcaC02g07169 Brassica carinata HOM05D007459 ORTHO05D009234 6.4e-10 68.9 134 32.1
BcaC02g07170 Brassica carinata HOM05D007459 ORTHO05D009234 6.4e-10 68.9 134 32.1
BolC4t28553H Brassica oleracea HOM05D007459 ORTHO05D009234 6.4e-10 68.9 134 32.1
Cfa015229 Carpinus fangiana HOM05D007459 ORTHO05D009234 6.4e-10 68.9 137 31.4
Manes.04G050800 Manihot esculenta HOM05D007459 ORTHO05D009234 8.4e-10 68.6 181 26.5
Carub.0004s2600 Capsella rubella HOM05D007459 ORTHO05D009234 1.4e-09 67.8 145 29.7
CiPaw.01G173000 Carya illinoinensis HOM05D007459 ORTHO05D009234 1.4e-09 67.8 146 30.1
Medtr2g099440 Medicago truncatula HOM05D007459 ORTHO05D009234 1.9e-09 67.4 154 31.2
Lsat_1_v5_gn_8_158021 Lactuca sativa HOM05D007459 ORTHO05D009234 2.4e-09 67.0 176 27.8
Haze_01399 Corylus avellana HOM05D007459 ORTHO05D009234 3.2e-09 66.6 172 27.9
QL10p052586 Quercus lobata HOM05D007459 ORTHO05D009234 3.2e-09 66.6 140 32.9
RcHm_v2.0_Chr2g0138101 Rosa chinensis HOM05D007459 ORTHO05D009234 3.2e-09 66.6 177 28.8
Atru.chr4.1350 Acer truncatum HOM05D007459 ORTHO05D009234 4.2e-09 66.2 137 29.9
Haze_01410 Corylus avellana HOM05D007459 ORTHO05D009234 5.4e-09 65.9 159 29.6
DCAR_028411 Daucus carota HOM05D007459 ORTHO05D009234 5.4e-09 65.9 132 30.3
Gohir.D02G110600 Gossypium hirsutum HOM05D007459 ORTHO05D009234 5.4e-09 65.9 145 31.0
Gorai.005G125500 Gossypium raimondii HOM05D007459 ORTHO05D009234 5.4e-09 65.9 145 31.0
Haze_01404 Corylus avellana HOM05D007459 ORTHO05D009234 7.1e-09 65.5 180 27.2
Duzib151G0483 Durio zibethinus HOM05D007459 ORTHO05D009234 9.3e-09 65.1 183 27.3
CsaV3_4G002640 Cucumis sativus L. HOM05D007459 ORTHO05D009234 1.2e-08 64.7 136 30.1
Rhsim09G0013300 Rhododendron simsii HOM05D007459 ORTHO05D009234 1.2e-08 64.7 186 28.0
Glyma.13G346600 Glycine max HOM05D007459 ORTHO05D009234 1.6e-08 64.3 140 30.0
BcaB06g29324 Brassica carinata HOM05D007459 ORTHO05D009234 2.7e-08 63.5 179 27.9
Gohir.A02G092500 Gossypium hirsutum HOM05D007459 ORTHO05D009234 4.6e-08 62.8 145 29.7
COL.COLO4_28394 Corchorus olitorius HOM05D007459 ORTHO05D009234 6.0e-08 62.4 144 29.9
THA.LOC104805901 Tarenaya hassleriana HOM05D007459 ORTHO05D009234 7.8e-08 62.0 90 38.9
CBR_g23514 Chara braunii HOM05D007459 ORTHO05D009234 1.3e-07 61.2 207 24.6
Potri.007G134400 Populus trichocarpa HOM05D007459 ORTHO05D009234 1.3e-07 61.2 185 28.6
vmacro06567 Vaccinium macrocarpon HOM05D007459 ORTHO05D009234 1.3e-07 61.2 185 27.0
C04p70520 Brassica napus HOM05D007459 ORTHO05D009234 1.7e-07 60.8 168 28.6
BolC4t28554H Brassica oleracea HOM05D007459 ORTHO05D009234 1.7e-07 60.8 168 28.6
Sabra07G0109100 Salix brachista HOM05D007459 ORTHO05D009234 1.7e-07 60.8 185 28.6
Psat5g291760 Pisum sativum HOM05D007459 ORTHO05D009234 2.3e-07 60.5 181 28.2
Ciclev10022478m.g Citrus clementina HOM05D007459 ORTHO05D009234 3.0e-07 60.1 89 38.2
Phvul.005G155700 Phaseolus vulgaris HOM05D007459 ORTHO05D009234 3.9e-07 59.7 158 32.3
MELO3C017778.2 Cucumis melo HOM05D007459 ORTHO05D009234 5.1e-07 59.3 179 25.1
Ca_01236_v3 Cicer arietinum L. HOM05D007459 ORTHO05D009234 1.5e-06 57.8 152 28.3
Prupe.1G201700 Prunus persica HOM05D007459 ORTHO05D009234 1.9e-06 57.4 174 28.7
MD04G1047100 Malus domestica HOM05D007459 ORTHO05D009234 3.3e-06 56.6 174 27.0
Lj3g0013618 Lotus japonicus HOM05D007459 ORTHO05D009234 5.6e-06 55.8 152 27.0


User provided reference genes

Program Settings