Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0037s0067 Marchantia polymorpha HOM05D006540 ORTHO05D008202 2.8e-183 645.2 339 100.0
AagrBONN_evm.TU.Sc2ySwM_340.367 Anthoceros agrestis HOM05D006540 ORTHO05D008202 1.8e-76 290.4 258 58.9
SMO347G0417 Selaginella moellendorffii HOM05D006540 ORTHO05D008202 3.0e-68 263.1 254 58.3
Pp3c27_6670 Physcomitrium patens HOM05D006540 ORTHO05D008202 3.4e-64 249.6 181 64.1
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 5.9e-56 222.2 244 50.8
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 5.9e-56 222.2 244 50.0
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 1.1e-54 218.0 273 46.2
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 1.2e-53 214.5 248 49.2
SEGI_37038 Sequoiadendron giganteum HOM05D006540 ORTHO05D008202 4.7e-53 212.6 171 59.6
Cc11_g15700 Coffea canephora HOM05D006540 ORTHO05D008202 7.9e-53 211.8 246 47.2
CDE02G2769 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 1.8e-52 210.7 293 44.0
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 2.3e-52 210.3 247 47.4
CDE09G1037 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 5.1e-52 209.1 279 45.5
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 5.1e-52 209.1 238 47.5
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 5.1e-52 209.1 252 48.4
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 8.8e-52 208.4 257 47.1
Nn4g22628 Nelumbo nucifera HOM05D006540 ORTHO05D008202 1.1e-51 208.0 181 57.5
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 1.1e-51 208.0 300 45.7
GSVIVG01004073001 Vitis vinifera HOM05D006540 ORTHO05D008202 1.1e-51 208.0 184 56.0
CANSAT35G0572 Cannabis sativa HOM05D006540 ORTHO05D008202 1.5e-51 207.6 236 48.3
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 2.0e-51 207.2 249 52.2
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 2.0e-51 207.2 249 50.2
vmacro01127 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 2.0e-51 207.2 184 57.6
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 3.3e-51 206.5 245 48.2
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 7.4e-51 205.3 271 45.0
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 1.3e-50 204.5 248 46.4
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 1.7e-50 204.1 255 47.1
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 1.7e-50 204.1 184 56.5
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 1.7e-50 204.1 256 46.9
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 2.2e-50 203.8 240 49.2
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 2.2e-50 203.8 183 56.8
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 2.8e-50 203.4 300 45.3
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 2.8e-50 203.4 300 45.3
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 2.8e-50 203.4 184 56.0
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 6.3e-50 202.2 240 47.5
Lj4g0023216 Lotus japonicus HOM05D006540 ORTHO05D008202 6.3e-50 202.2 249 47.4
COL.COLO4_24263 Corchorus olitorius HOM05D006540 ORTHO05D008202 1.1e-49 201.4 218 50.5
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 1.4e-49 201.1 240 49.2
Ca_22583_v3 Cicer arietinum L. HOM05D006540 ORTHO05D008202 1.4e-49 201.1 235 49.4
Eucgr.B03288 Eucalyptus grandis HOM05D006540 ORTHO05D008202 1.4e-49 201.1 240 47.5
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.8e-49 200.7 300 43.7
Lj6A811T79 Lonicera japonica HOM05D006540 ORTHO05D008202 1.8e-49 200.7 276 46.0
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 1.8e-49 200.7 246 48.4
EL10Ac6g13801 Beta vulgaris HOM05D006540 ORTHO05D008202 2.4e-49 200.3 262 45.8
CAN.G832.5 Capsicum annuum HOM05D006540 ORTHO05D008202 2.4e-49 200.3 184 54.9
Peaxi162Scf00128g00138 Petunia axillaris HOM05D006540 ORTHO05D008202 2.4e-49 200.3 254 47.2
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 3.1e-49 199.9 184 55.4
Thhalv10004491m.g Eutrema salsugineum HOM05D006540 ORTHO05D008202 4.1e-49 199.5 254 47.2
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 4.1e-49 199.5 244 47.5
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 4.1e-49 199.5 184 54.9
ATR0686G190 Amborella trichopoda HOM05D006540 ORTHO05D008202 5.3e-49 199.1 246 45.9
CSS0000303 Camellia sinensis var. sinensis HOM05D006540 ORTHO05D008202 5.3e-49 199.1 184 55.4
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 5.3e-49 199.1 246 46.7
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 5.3e-49 199.1 263 49.4
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 7.0e-49 198.7 241 47.7
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 7.0e-49 198.7 241 48.5
FAN17G1845 Fragaria x ananassa HOM05D006540 ORTHO05D008202 7.0e-49 198.7 300 44.3
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 7.0e-49 198.7 184 53.8
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 9.1e-49 198.4 300 44.3
Glyma.17G134500 Glycine max HOM05D006540 ORTHO05D008202 9.1e-49 198.4 246 47.6
Phvul.003G064400 Phaseolus vulgaris HOM05D006540 ORTHO05D008202 1.2e-48 198.0 238 48.7
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 1.5e-48 197.6 184 55.4
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 2.6e-48 196.8 184 55.4
AUR62024282 Chenopodium quinoa HOM05D006540 ORTHO05D008202 2.6e-48 196.8 215 48.8
Rhsim12G0110600 Rhododendron simsii HOM05D006540 ORTHO05D008202 2.6e-48 196.8 244 46.7
Lalb_Chr05g0228421 Lupinus albus HOM05D006540 ORTHO05D008202 4.5e-48 196.1 237 50.2
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 4.5e-48 196.1 181 54.1
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 7.7e-48 195.3 247 47.8
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 7.7e-48 195.3 240 47.5
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 1.3e-47 194.5 184 53.3
Actinidia37429 Actinidia chinensis HOM05D006540 ORTHO05D008202 2.9e-47 193.4 244 45.5
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 2.9e-47 193.4 240 47.5
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 2.9e-47 193.4 241 47.7
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 2.9e-47 193.4 241 47.7
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 2.9e-47 193.4 240 47.5
Medtr8g069450 Medicago truncatula HOM05D006540 ORTHO05D008202 2.9e-47 193.4 261 46.7
MBI10_g13027_MAGBIO Magnolia biondii HOM05D006540 ORTHO05D008202 5.0e-47 192.6 207 48.3
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 6.5e-47 192.2 281 44.5
AUR62005459 Chenopodium quinoa HOM05D006540 ORTHO05D008202 6.5e-47 192.2 184 53.3
Ah.03g133040 Amaranthus hybridus HOM05D006540 ORTHO05D008202 8.5e-47 191.8 251 44.6
HanXRQChr08g0208131 Helianthus annuus HOM05D006540 ORTHO05D008202 8.5e-47 191.8 184 54.3
Duzib248G0112 Durio zibethinus HOM05D006540 ORTHO05D008202 1.1e-46 191.4 233 46.4
ECA233G5619 Erigeron canadensis HOM05D006540 ORTHO05D008202 1.1e-46 191.4 286 43.0
Lsat_1_v5_gn_8_152220 Lactuca sativa HOM05D006540 ORTHO05D008202 1.4e-46 191.0 248 46.8
DCAR_024432 Daucus carota HOM05D006540 ORTHO05D008202 3.2e-46 189.9 247 46.2
PSO017G4849 Papaver somniferum HOM05D006540 ORTHO05D008202 3.2e-46 189.9 205 50.7
arahy.Tifrunner.gnm1.ann1.NX3C69 Arachis hypogaea HOM05D006540 ORTHO05D008202 5.5e-46 189.1 244 44.7
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 5.5e-46 189.1 212 50.0
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 7.2e-46 188.7 241 47.3
arahy.Tifrunner.gnm1.ann1.LD9JWE Arachis hypogaea HOM05D006540 ORTHO05D008202 2.1e-45 187.2 244 44.3
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 2.1e-45 187.2 180 52.8
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 2.7e-45 186.8 295 40.7
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 6.1e-45 185.7 242 46.7
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 3.9e-44 183.0 310 38.7
Psat4g116680 Pisum sativum HOM05D006540 ORTHO05D008202 2.0e-43 180.6 229 47.2
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 2.6e-43 180.3 277 45.5
unitig_21.g20872 Utricularia gibba HOM05D006540 ORTHO05D008202 2.8e-42 176.8 248 42.7
Zm00001eb096140 Zea mays HOM05D006540 ORTHO05D008202 3.7e-42 176.4 188 49.5
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 2.4e-41 173.7 299 40.5
HPP92_002022 Vanilla planifolia HOM05D006540 ORTHO05D008202 7.0e-41 172.2 257 43.2
TPR.G17765 Trifolium pratense HOM05D006540 ORTHO05D008202 1.2e-40 171.4 154 59.1
Os03g0428800 Oryza sativa ssp. japonica HOM05D006540 ORTHO05D008202 2.0e-40 170.6 208 47.6
Rhsim12G0041000 Rhododendron simsii HOM05D006540 ORTHO05D008202 5.9e-40 169.1 320 38.1
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 4.7e-37 159.5 157 54.1
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 4.7e-37 159.5 151 61.6
PSO478G4529 Papaver somniferum HOM05D006540 ORTHO05D008202 1.0e-36 158.3 271 39.9
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 2.3e-36 157.1 148 55.4
VMungo0251G1250 Vigna mungo HOM05D006540 ORTHO05D008202 8.8e-36 155.2 176 52.3
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 1.2e-35 154.8 117 65.0
BcaB01g00564 Brassica carinata HOM05D006540 ORTHO05D008202 7.5e-35 152.1 185 47.0
CBR_g8379 Chara braunii HOM05D006540 ORTHO05D008202 7.2e-30 135.6 135 55.6
Cre12.g528050 Chlamydomonas reinhardtii HOM05D006540 ORTHO05D008202 8.9e-20 102.1 218 35.8
MCO07G599 Micromonas commoda HOM05D006540 ORTHO05D008202 1.6e-16 91.3 161 36.6
PRCOL_00004949 Prasinoderma coloniale HOM05D006540 ORTHO05D008202 6.6e-15 85.9 202 28.2
Pp3c6_29630 Physcomitrium patens HOM05D006540 ORTHO05D008202 7.8e-08 62.4 138 36.2
unitig_744.g24293 Utricularia gibba HOM05D006540 ORTHO05D008202 1.7e-07 61.2 44 56.8
BcaC06g33898 Brassica carinata HOM05D006540 ORTHO05D008202 1.1e-06 58.5 80 41.2


User provided reference genes

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