Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 2.2e-109 399.4 284 100.0
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 1.1e-31 141.4 254 63.8
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 1.9e-28 130.6 264 59.8
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.1e-26 124.8 255 62.0
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.8e-26 124.0 255 61.6
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 2.4e-26 123.6 255 61.2
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 2.4e-26 123.6 255 61.6
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 2.4e-26 123.6 255 61.6
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 3.1e-26 123.2 255 61.6
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 1.5e-25 120.9 268 58.6
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 1.5e-25 120.9 83 75.9
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.6e-25 120.2 249 60.6
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 3.4e-25 119.8 263 59.7
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 3.4e-25 119.8 272 58.5
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 3.4e-25 119.8 269 58.4
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 3.4e-25 119.8 253 59.7
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 4.5e-25 119.4 272 58.5
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 4.5e-25 119.4 273 57.5
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 5.9e-25 119.0 254 59.8
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 5.9e-25 119.0 253 60.9
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 5.9e-25 119.0 272 58.5
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 5.9e-25 119.0 253 59.7
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 7.7e-25 118.6 254 59.8
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 7.7e-25 118.6 254 59.8
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 7.7e-25 118.6 276 56.9
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 1.3e-24 117.9 253 59.3
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.3e-24 117.9 282 55.7
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 1.3e-24 117.9 266 57.1
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 1.3e-24 117.9 272 56.2
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 1.3e-24 117.9 85 68.2
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 1.7e-24 117.5 283 56.5
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 1.7e-24 117.5 283 56.2
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 1.7e-24 117.5 283 56.5
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 1.7e-24 117.5 78 74.4
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 2.2e-24 117.1 253 59.3
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 2.2e-24 117.1 252 59.1
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.2e-24 117.1 264 57.6
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 2.9e-24 116.7 283 56.5
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 2.9e-24 116.7 283 56.5
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 2.9e-24 116.7 274 56.9
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 3.8e-24 116.3 249 59.4
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 5.0e-24 115.9 84 72.6
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 5.0e-24 115.9 275 48.0
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 6.5e-24 115.5 253 58.9
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 6.5e-24 115.5 249 59.8
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 8.5e-24 115.2 86 72.1
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.1e-23 114.8 276 55.8
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.1e-23 114.8 276 55.8
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 1.1e-23 114.8 270 57.0
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 1.4e-23 114.4 256 57.8
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 1.9e-23 114.0 253 59.3
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.9e-23 114.0 253 58.1
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 1.9e-23 114.0 262 57.6
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 1.9e-23 114.0 279 56.6
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 2.5e-23 113.6 253 58.9
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 3.2e-23 113.2 270 55.9
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 3.2e-23 113.2 81 71.6
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 4.2e-23 112.8 268 56.0
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 4.2e-23 112.8 268 56.0
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 4.2e-23 112.8 238 61.8
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 4.2e-23 112.8 256 57.0
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 4.2e-23 112.8 249 59.0
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 5.5e-23 112.5 83 67.5
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 5.5e-23 112.5 251 58.2
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 7.2e-23 112.1 74 70.3
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 7.2e-23 112.1 74 70.3
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 7.2e-23 112.1 74 70.3
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 7.2e-23 112.1 253 58.9
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 9.4e-23 111.7 274 55.5
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 9.4e-23 111.7 270 55.9
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.2e-22 111.3 249 57.4
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 1.2e-22 111.3 71 74.6
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 1.2e-22 111.3 254 59.1
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 1.2e-22 111.3 85 70.6
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 1.6e-22 110.9 74 71.6
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 2.1e-22 110.5 86 65.1
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 2.1e-22 110.5 253 57.7
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 2.7e-22 110.2 278 56.8
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 2.7e-22 110.2 275 55.6
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 2.7e-22 110.2 249 58.6
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 3.6e-22 109.8 84 63.1
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 3.6e-22 109.8 253 57.7
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.6e-22 109.8 253 57.7
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.6e-22 109.8 253 57.7
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 3.6e-22 109.8 83 65.1
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 3.6e-22 109.8 83 61.4
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 4.6e-22 109.4 269 56.9
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 4.6e-22 109.4 271 55.7
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 4.6e-22 109.4 261 54.8
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 6.1e-22 109.0 250 58.0
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 6.1e-22 109.0 276 55.8
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 6.1e-22 109.0 280 54.6
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 6.1e-22 109.0 250 53.2
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 7.9e-22 108.6 74 68.9
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.9e-22 108.6 250 58.0
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 7.9e-22 108.6 250 58.0
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 7.9e-22 108.6 250 58.4
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.0e-21 108.2 255 58.4
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.0e-21 108.2 248 57.3
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.4e-21 107.8 249 57.0
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.4e-21 107.8 270 55.6
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 1.4e-21 107.8 83 62.7
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 1.4e-21 107.8 92 62.0
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 1.8e-21 107.5 249 58.6
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 1.8e-21 107.5 74 66.2
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 1.8e-21 107.5 83 63.9
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 2.3e-21 107.1 248 58.9
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 2.3e-21 107.1 74 67.6
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 3.0e-21 106.7 83 65.1
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 3.0e-21 106.7 83 65.1
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 3.0e-21 106.7 249 59.0
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 3.0e-21 106.7 253 56.9
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 3.0e-21 106.7 278 34.9
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 3.9e-21 106.3 264 56.8
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 3.9e-21 106.3 83 62.7
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 3.9e-21 106.3 249 57.8
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 3.9e-21 106.3 254 57.5
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 6.7e-21 105.5 249 58.6
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 6.7e-21 105.5 83 61.4
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 6.7e-21 105.5 83 62.7
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 8.8e-21 105.1 249 58.6
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 8.8e-21 105.1 249 58.6
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 8.8e-21 105.1 74 66.2
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 8.8e-21 105.1 253 56.5
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.1e-20 104.8 264 56.8
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 1.1e-20 104.8 247 59.9
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 1.1e-20 104.8 92 62.0
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 2.0e-20 104.0 94 61.7
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 2.6e-20 103.6 75 69.3
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 3.3e-20 103.2 75 68.0
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 4.3e-20 102.8 75 68.0
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 7.4e-20 102.1 82 61.0
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 7.4e-20 102.1 74 64.9
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.7e-19 100.9 83 57.8
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 6.3e-19 99.0 283 54.8
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 4.1e-18 96.3 88 59.1
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 5.3e-18 95.9 77 64.9
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 3.8e-16 89.7 75 58.7
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 4.2e-15 86.3 83 54.2
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 5.5e-15 85.9 66 68.2
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 1.6e-14 84.3 249 53.8
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 6.1e-14 82.4 227 56.4
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 1.4e-13 81.3 247 55.5
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 3.0e-13 80.1 247 42.5
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 3.3e-12 76.6 259 53.3
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 5.9e-09 65.9 219 57.1
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 1.0e-08 65.1 57 56.1
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 8.5e-08 62.0 55 58.2
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 1.9e-07 60.8 241 52.7
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 3.2e-07 60.1 216 56.5
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.1e-06 57.4 217 56.2


User provided reference genes

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